Wall clock time and date at job start Tue Mar 31 2020 17:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99864 * 2 1 4 4 C 1.53002 * 109.46791 * 180.02562 * 3 2 1 5 5 S 1.81392 * 109.47009 * 179.97438 * 4 3 2 6 6 O 1.42106 * 108.57783 * 65.51411 * 5 4 3 7 7 O 1.42101 * 108.58283 * 294.48827 * 5 4 3 8 8 C 1.81404 * 101.92178 * 179.97438 * 5 4 3 9 9 C 1.50702 * 109.47189 * 179.97438 * 8 5 4 10 10 O 1.21284 * 119.99704 * 0.02562 * 9 8 5 11 11 N 1.34776 * 119.99649 * 179.97438 * 9 8 5 12 12 C 1.47415 * 125.65278 * 354.77772 * 11 9 8 13 13 C 1.54906 * 104.83668 * 156.13586 * 12 11 9 14 14 C 1.55154 * 101.58080 * 37.00663 * 13 12 11 15 15 C 1.47022 * 125.64392 * 175.08273 * 11 9 8 16 16 H 1.09003 * 109.88395 * 300.21482 * 15 11 9 17 17 C 1.53002 * 109.88608 * 61.37729 * 15 11 9 18 18 N 1.46503 * 109.47207 * 185.22124 * 17 15 11 19 19 C 1.36936 * 119.99748 * 185.01435 * 18 17 15 20 20 H 1.08000 * 119.99831 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00004 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47286 * 89.99673 * 23 21 19 25 25 H 1.48503 * 109.46921 * 209.99902 * 23 21 19 26 26 H 1.48499 * 109.46796 * 329.99589 * 23 21 19 27 27 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47024 * 300.00244 * 1 2 3 29 29 H 1.08997 * 109.47313 * 59.99803 * 1 2 3 30 30 H 1.09002 * 109.46982 * 60.00546 * 3 2 1 31 31 H 1.09000 * 109.46802 * 300.00028 * 3 2 1 32 32 H 1.09000 * 109.47063 * 59.99547 * 4 3 2 33 33 H 1.09002 * 109.47089 * 299.99992 * 4 3 2 34 34 H 1.09004 * 109.46825 * 60.00509 * 8 5 4 35 35 H 1.08995 * 109.47435 * 300.00497 * 8 5 4 36 36 H 1.09005 * 110.36509 * 274.96943 * 12 11 9 37 37 H 1.08999 * 110.37017 * 37.29316 * 12 11 9 38 38 H 1.09009 * 111.00056 * 278.93335 * 13 12 11 39 39 H 1.08996 * 111.01072 * 155.08082 * 13 12 11 40 40 H 1.09007 * 110.72187 * 206.14060 * 14 13 12 41 41 H 1.08998 * 110.72231 * 82.86451 * 14 13 12 42 42 H 1.08999 * 109.46762 * 305.22626 * 17 15 11 43 43 H 1.08999 * 109.46755 * 65.22217 * 17 15 11 44 44 H 0.96990 * 119.99900 * 5.02318 * 18 17 15 45 45 H 0.97009 * 120.00117 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 16 4.2733 2.8417 -0.0014 6 8 3.9480 3.4827 1.2244 7 8 3.9469 3.4822 -1.2272 8 6 6.0472 2.4621 -0.0013 9 6 6.8357 3.7463 -0.0025 10 8 6.2579 4.8127 -0.0029 11 7 8.1830 3.7098 -0.0022 12 6 9.0095 2.4942 0.1084 13 6 10.3645 2.8756 -0.5383 14 6 10.5225 4.3505 -0.0834 15 6 9.0718 4.8764 -0.1057 16 1 8.8831 5.4044 -1.0404 17 6 8.8400 5.8141 1.0809 18 7 9.6376 7.0304 0.9052 19 6 9.6719 7.9756 1.8954 20 1 9.1107 7.8246 2.8057 21 6 10.4272 9.1282 1.7288 22 7 11.1107 9.3124 0.6192 23 14 10.4746 10.4173 3.0800 24 1 11.5920 10.1177 4.0109 25 1 10.6788 11.7590 2.4770 26 1 9.1907 10.4000 3.8258 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8463 -0.8900 32 1 3.8567 0.6438 -0.8908 33 1 3.8575 0.6435 0.8891 34 1 6.2949 1.8833 -0.8911 35 1 6.2950 1.8840 0.8888 36 1 9.1512 2.2257 1.1554 37 1 8.5478 1.6706 -0.4361 38 1 10.3123 2.8052 -1.6248 39 1 11.1722 2.2574 -0.1466 40 1 11.1448 4.9060 -0.7851 41 1 10.9357 4.4013 0.9239 42 1 7.7835 6.0770 1.1352 43 1 9.1378 5.3143 2.0026 44 1 10.1412 7.1661 0.0875 45 1 11.6383 10.1181 0.5026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482058732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:04 Heat of formation + Delta-G solvation = -160.105256 kcal Electronic energy + Delta-G solvation = -27121.912195 eV Core-core repulsion = 23073.552544 eV Total energy + Delta-G solvation = -4048.359651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.40945 -38.99757 -38.85940 -38.11568 -37.09597 -36.47471 -33.75806 -33.05583 -32.83710 -31.26898 -30.02088 -27.48865 -26.77925 -25.06559 -24.43859 -23.55203 -22.03016 -20.53324 -19.84064 -19.24389 -18.59020 -17.94378 -17.87873 -17.59815 -17.19836 -16.82894 -16.57491 -16.42913 -16.15473 -15.85179 -15.67932 -15.18112 -15.08076 -15.03024 -14.57911 -14.15462 -13.94668 -13.65508 -13.60595 -13.20332 -13.18660 -13.12302 -13.03540 -12.95187 -12.76660 -12.70094 -12.48484 -12.27929 -12.19798 -11.99325 -11.94756 -11.82713 -11.69167 -11.59417 -11.34672 -10.95680 -10.78154 -9.81759 -9.07153 -8.00474 -5.30393 -1.26820 1.31969 1.42743 1.45936 1.54563 1.66994 1.71389 2.45358 2.53296 2.95456 2.98645 3.26900 3.32662 3.58377 3.62115 3.72357 3.73193 3.87879 3.97135 4.10083 4.18044 4.22290 4.29287 4.32898 4.42577 4.47082 4.51625 4.55356 4.70501 4.71875 4.81255 4.84597 4.90848 5.03667 5.10584 5.15185 5.31799 5.39091 5.42727 5.99858 6.20651 6.34137 6.84547 7.27548 7.98325 8.26272 9.22665 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.002554 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.461011 B =10960.563150 C =12144.367169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.396 6.396 3 C 0.055 3.945 4 C -0.591 4.591 5 S 2.440 3.560 6 O -0.972 6.972 7 O -0.970 6.970 8 C -0.629 4.629 9 C 0.531 3.469 10 O -0.586 6.586 11 N -0.600 5.600 12 C 0.086 3.914 13 C -0.120 4.120 14 C -0.118 4.118 15 C 0.132 3.868 16 H 0.054 0.946 17 C 0.146 3.854 18 N -0.736 5.736 19 C -0.251 4.251 20 H 0.066 0.934 21 C -0.071 4.071 22 N -0.965 5.965 23 Si 0.978 3.022 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.215 0.785 35 H 0.210 0.790 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.002 0.998 43 H 0.025 0.975 44 H 0.376 0.624 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 -30.748 -3.743 33.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.315 6.315 3 C -0.023 4.023 4 C -0.722 4.722 5 S 2.624 3.376 6 O -0.970 6.970 7 O -0.967 6.967 8 C -0.758 4.758 9 C 0.319 3.681 10 O -0.467 6.467 11 N -0.333 5.333 12 C -0.034 4.034 13 C -0.158 4.158 14 C -0.156 4.156 15 C 0.028 3.972 16 H 0.072 0.928 17 C 0.019 3.981 18 N -0.379 5.379 19 C -0.383 4.383 20 H 0.084 0.916 21 C -0.264 4.264 22 N -0.615 5.615 23 Si 0.806 3.194 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.202 1.202 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.196 0.804 33 H 0.195 0.805 34 H 0.232 0.768 35 H 0.228 0.772 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.020 0.980 43 H 0.043 0.957 44 H 0.209 0.791 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.751 -29.470 -3.581 32.309 hybrid contribution 0.343 1.178 0.378 1.284 sum -12.408 -28.292 -3.203 31.059 Atomic orbital electron populations 1.23076 0.79128 1.04574 1.01225 1.87850 1.21637 1.26368 1.95666 1.22220 0.90828 0.86799 1.02481 1.30268 1.04245 1.21304 1.16400 1.07234 0.78100 0.78309 0.73955 1.93546 1.82571 1.73571 1.47266 1.93537 1.82517 1.73531 1.47124 1.30654 1.22178 1.04567 1.18445 1.19791 0.82235 0.89808 0.76244 1.90910 1.69837 1.33799 1.52179 1.48491 1.04106 1.09895 1.70796 1.22912 0.90912 0.86384 1.03178 1.22845 0.97278 0.93798 1.01879 1.22590 0.92139 0.98036 1.02851 1.21659 0.91569 0.86978 0.97034 0.92752 1.21022 0.93622 0.87364 0.96119 1.42300 1.56675 1.19105 1.19854 1.19541 1.23216 0.98511 0.97035 0.91560 1.25591 1.00157 1.00502 1.00152 1.69806 1.35579 1.28640 1.27478 0.85092 0.77911 0.78146 0.78293 1.20477 1.21675 1.20224 0.87470 0.93057 0.92961 0.91528 0.91384 0.80364 0.80530 0.76806 0.77248 0.89182 0.85483 0.89392 0.86704 0.90532 0.91043 0.98022 0.95745 0.79120 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -5.68 10.70 -148.98 -1.59 -7.27 16 3 C 0.05 0.76 5.95 71.98 0.43 1.19 16 4 C -0.59 -4.88 6.17 71.98 0.44 -4.43 16 5 S 2.44 49.56 3.96 -56.49 -0.22 49.34 16 6 O -0.97 -30.08 17.95 -125.75 -2.26 -32.33 16 7 O -0.97 -29.03 17.95 -125.75 -2.26 -31.29 16 8 C -0.63 -8.07 5.22 71.24 0.37 -7.70 16 9 C 0.53 15.74 7.68 87.66 0.67 16.41 16 10 O -0.59 -25.60 14.40 -0.16 0.00 -25.60 16 11 N -0.60 -16.00 3.07 -788.07 -2.42 -18.42 16 12 C 0.09 1.15 6.73 86.86 0.58 1.74 16 13 C -0.12 -1.77 7.08 31.98 0.23 -1.54 16 14 C -0.12 -3.22 6.24 31.78 0.20 -3.02 16 15 C 0.13 4.68 2.95 45.34 0.13 4.81 16 16 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 17 C 0.15 6.88 5.66 86.38 0.49 7.36 16 18 N -0.74 -41.02 5.42 -343.45 -1.86 -42.88 16 19 C -0.25 -15.28 9.99 84.03 0.84 -14.44 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 21 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 22 N -0.96 -60.98 13.06 21.65 0.28 -60.70 16 23 Si 0.98 48.60 29.55 68.60 2.03 50.63 16 24 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 27 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.18 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.18 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.21 0.32 7.96 -2.39 -0.02 0.30 16 35 H 0.21 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.13 0.48 7.48 -2.39 -0.02 0.46 16 38 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 41 H 0.07 2.14 7.76 -2.39 -0.02 2.12 16 42 H 0.00 0.10 6.53 -2.39 -0.02 0.08 16 43 H 0.02 1.12 8.02 -2.39 -0.02 1.10 16 44 H 0.38 21.59 7.61 -92.72 -0.71 20.89 16 45 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -102.12 384.92 -1.92 -104.04 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.28 Total: 16.56 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 6.10 Total: -2.07 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -3.99 Total: -122.00 kcal Atomic # 8 Polarization: -90.39 SS G_CDS: -6.11 Total: -96.50 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Atomic # 16 Polarization: 49.56 SS G_CDS: -0.22 Total: 49.34 kcal Total: -102.12 -1.92 -104.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482058732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.067 kcal (2) G-P(sol) polarization free energy of solvation -102.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds