Wall clock time and date at job start Tue Mar 31 2020 18:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48503 * 109.46694 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47147 * 299.99856 * 3 2 1 6 6 H 1.48500 * 109.46986 * 60.00040 * 3 2 1 7 7 C 1.38815 * 119.99332 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99236 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00407 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00254 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47426 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.05352 * 305.03698 * 11 10 9 13 13 C 1.54266 * 110.03482 * 66.45421 * 11 10 9 14 14 C 1.54891 * 104.31343 * 142.96208 * 13 11 10 15 15 C 1.54892 * 102.74959 * 321.99283 * 14 13 11 16 16 C 1.54224 * 110.14449 * 183.47935 * 11 10 9 17 17 H 1.09000 * 110.04153 * 121.41916 * 16 11 10 18 18 N 1.46493 * 110.02477 * 0.03884 * 16 11 10 19 19 C 1.34768 * 120.00418 * 156.33818 * 18 16 11 20 20 O 1.21701 * 119.99852 * 359.97438 * 19 18 16 21 21 C 1.46581 * 120.00583 * 179.97438 * 19 18 16 22 22 C 1.35873 * 125.42200 * 179.71708 * 21 19 18 23 23 C 1.39171 * 113.99866 * 179.79819 * 22 21 19 24 24 C 1.34365 * 113.99929 * 0.50352 * 23 22 21 25 25 S 1.71477 * 111.07657 * 359.71485 * 24 23 22 26 26 C 1.52370 * 110.38496 * 179.67946 * 24 23 22 27 27 C 1.54159 * 104.90409 * 342.45345 * 26 24 23 28 28 C 1.52824 * 136.18531 * 180.13731 * 23 22 21 29 29 H 0.96998 * 119.99833 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00104 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47127 * 59.99746 * 10 9 7 32 32 H 1.09002 * 109.47030 * 300.00484 * 10 9 7 33 33 H 1.09002 * 110.48609 * 24.21622 * 13 11 10 34 34 H 1.08998 * 110.48769 * 261.70715 * 13 11 10 35 35 H 1.09000 * 110.75322 * 80.30558 * 14 13 11 36 36 H 1.09002 * 110.75658 * 203.67757 * 14 13 11 37 37 H 1.08993 * 110.48715 * 156.62375 * 15 14 13 38 38 H 1.09001 * 110.48596 * 279.13315 * 15 14 13 39 39 H 0.97005 * 120.00160 * 336.33789 * 18 16 11 40 40 H 1.07999 * 122.99846 * 359.97438 * 22 21 19 41 41 H 1.09002 * 110.35108 * 101.31128 * 26 24 23 42 42 H 1.09002 * 110.35402 * 223.59481 * 26 24 23 43 43 H 1.08998 * 110.96296 * 268.59687 * 27 26 24 44 44 H 1.08998 * 110.96589 * 144.85261 * 27 26 24 45 45 H 1.08996 * 110.32848 * 316.89016 * 28 23 22 46 46 H 1.09000 * 110.33295 * 79.11381 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.0636 -4.8197 -0.0021 12 1 0.3743 -4.7223 0.8367 13 6 0.2796 -4.8443 -1.3304 14 6 0.1081 -6.3509 -1.6460 15 6 1.4620 -6.9514 -1.1927 16 6 1.8170 -6.1626 0.0846 17 1 1.4943 -6.7157 0.9667 18 7 3.2613 -5.9248 0.1425 19 6 4.0757 -6.8513 0.6852 20 8 3.6111 -7.8855 1.1277 21 6 5.5209 -6.6136 0.7426 22 6 6.4390 -7.4663 1.2682 23 6 7.7493 -7.0029 1.1945 24 6 7.8693 -5.7912 0.6265 25 16 6.3399 -5.1791 0.1503 26 6 9.3310 -5.3620 0.5953 27 6 10.0341 -6.2749 1.6194 28 6 9.1268 -7.5205 1.6068 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6852 -3.7151 0.8878 32 1 2.6839 -3.7142 -0.8921 33 1 0.8491 -4.3518 -2.1187 34 1 -0.6927 -4.3670 -1.2084 35 1 -0.7146 -6.7749 -1.0704 36 1 -0.0454 -6.5069 -2.7139 37 1 1.3526 -8.0123 -0.9679 38 1 2.2218 -6.8013 -1.9597 39 1 3.6316 -5.1003 -0.2098 40 1 6.1758 -8.4197 1.7018 41 1 9.7498 -5.5150 -0.3994 42 1 9.4257 -4.3171 0.8909 43 1 10.0495 -5.8137 2.6069 44 1 11.0432 -6.5242 1.2914 45 1 9.0820 -7.9666 2.6003 46 1 9.4913 -8.2472 0.8807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482691442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:28 Heat of formation + Delta-G solvation = 1.009798 kcal Electronic energy + Delta-G solvation = -26152.454460 eV Core-core repulsion = 22554.223296 eV Total energy + Delta-G solvation = -3598.231164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.19230 -39.51186 -37.92730 -34.55485 -34.35813 -33.60976 -31.42872 -29.06566 -28.68211 -28.51335 -27.10144 -24.62211 -23.66732 -22.51496 -22.02659 -20.65926 -20.35670 -19.16697 -18.73500 -18.04765 -17.19391 -16.26885 -16.09523 -15.80477 -15.11252 -14.94114 -14.79266 -14.52775 -14.29456 -13.73956 -13.57369 -13.22080 -13.05182 -12.97948 -12.89026 -12.60198 -12.21580 -12.15883 -11.99001 -11.66378 -11.50900 -11.32120 -11.13741 -10.97242 -10.89662 -10.84998 -10.79906 -10.49108 -10.40745 -10.29082 -10.02032 -9.94871 -9.71359 -9.05019 -8.90004 -8.74183 -8.48291 -6.96237 -5.79624 -3.08576 0.42635 1.22936 1.81554 2.18180 3.16774 3.21175 3.41086 3.46563 3.48909 4.19045 4.22494 4.52051 4.64911 4.67076 4.78085 4.83129 4.99413 5.10665 5.15524 5.21064 5.34763 5.43591 5.45054 5.52073 5.54347 5.58918 5.61949 5.66130 5.75366 5.78652 5.82291 5.86078 5.92649 6.05997 6.09713 6.15742 6.19536 6.20633 6.29392 6.43881 6.57726 6.58665 6.69803 6.79938 7.52351 7.66729 8.19344 8.38822 9.50539 10.07291 10.42482 11.43178 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009497 B = 0.003575 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.654973 B = 7830.487427 C =10423.398146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.156 3.844 11 C -0.108 4.108 12 H 0.084 0.916 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.150 3.850 17 H 0.091 0.909 18 N -0.716 5.716 19 C 0.591 3.409 20 O -0.536 6.536 21 C -0.265 4.265 22 C -0.040 4.040 23 C -0.142 4.142 24 C -0.224 4.224 25 S 0.232 5.768 26 C -0.045 4.045 27 C -0.118 4.118 28 C -0.056 4.056 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.021 0.979 32 H 0.016 0.984 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.404 0.596 40 H 0.149 0.851 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.654 -16.003 -0.636 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.028 3.972 11 C -0.127 4.127 12 H 0.102 0.898 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.171 4.171 16 C 0.045 3.955 17 H 0.109 0.891 18 N -0.369 5.369 19 C 0.377 3.623 20 O -0.415 6.415 21 C -0.386 4.386 22 C -0.073 4.073 23 C -0.155 4.155 24 C -0.343 4.343 25 S 0.503 5.497 26 C -0.084 4.084 27 C -0.157 4.157 28 C -0.095 4.095 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.243 0.757 40 H 0.167 0.833 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.916 -15.221 -1.045 21.336 hybrid contribution 0.771 0.107 0.551 0.954 sum 15.687 -15.113 -0.494 21.788 Atomic orbital electron populations 1.69670 1.05104 1.25569 1.57655 1.24738 0.95514 0.97677 1.02922 0.86137 0.78802 0.84161 0.77215 1.20534 1.21840 1.21852 1.19256 0.91036 0.84119 1.42780 0.91154 1.42309 1.05894 0.99641 1.89295 1.20673 0.93424 0.85819 0.97252 1.22290 0.97864 0.93262 0.99320 0.89764 1.22358 1.00677 0.95210 0.96703 1.22490 0.96665 0.96259 1.00774 1.22765 0.97785 0.99496 0.97016 1.21772 0.78384 0.96351 0.99007 0.89069 1.46290 1.07934 1.21341 1.61331 1.16904 0.83967 0.83677 0.77726 1.90797 1.76061 1.26500 1.48179 1.24295 0.97778 1.01633 1.14844 1.20155 0.89815 1.00063 0.97275 1.20367 0.95103 0.95808 1.04210 1.25715 1.01379 1.00899 1.06343 1.83197 0.93841 1.16530 1.56159 1.20879 0.86755 1.00353 1.00446 1.22292 0.98567 0.95296 0.99563 1.20984 0.89037 0.97713 1.01777 0.93535 0.78093 0.96179 0.96636 0.90962 0.91092 0.91487 0.91567 0.91362 0.91317 0.75686 0.83317 0.89757 0.90325 0.90570 0.90053 0.90670 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.89 5.43 -59.91 -0.33 -18.22 16 10 C 0.16 3.03 4.18 -4.04 -0.02 3.02 16 11 C -0.11 -1.74 2.99 -89.32 -0.27 -2.01 16 12 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.11 -1.68 6.00 -25.07 -0.15 -1.83 16 14 C -0.12 -1.53 6.91 -24.74 -0.17 -1.70 16 15 C -0.13 -1.72 6.52 -25.07 -0.16 -1.88 16 16 C 0.15 2.20 3.21 -66.63 -0.21 1.98 16 17 H 0.09 1.40 7.60 -51.93 -0.39 1.00 16 18 N -0.72 -10.61 4.46 -53.89 -0.24 -10.85 16 19 C 0.59 9.23 7.77 -12.90 -0.10 9.13 16 20 O -0.54 -9.67 16.50 5.19 0.09 -9.58 16 21 C -0.27 -3.64 6.41 -37.07 -0.24 -3.87 16 22 C -0.04 -0.50 9.99 -40.08 -0.40 -0.90 16 23 C -0.14 -1.53 6.49 -104.58 -0.68 -2.21 16 24 C -0.22 -2.40 7.10 -34.85 -0.25 -2.65 16 25 S 0.23 2.78 22.15 -107.50 -2.38 0.40 16 26 C -0.05 -0.35 6.80 -26.45 -0.18 -0.53 16 27 C -0.12 -0.75 7.11 -25.54 -0.18 -0.93 16 28 C -0.06 -0.43 6.81 -26.24 -0.18 -0.61 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.39 9.99 7.51 -40.82 -0.31 9.68 16 31 H 0.02 0.41 7.51 -51.93 -0.39 0.02 16 32 H 0.02 0.30 7.07 -51.93 -0.37 -0.06 16 33 H 0.07 1.18 7.78 -51.93 -0.40 0.77 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.89 8.05 -51.93 -0.42 0.48 16 39 H 0.40 5.88 4.95 -40.82 -0.20 5.67 16 40 H 0.15 1.77 8.04 -52.49 -0.42 1.35 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -31.81 380.49 -11.96 -43.77 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.10 Total: 10.93 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.43 Total: -12.19 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.16 Total: -56.14 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.38 Total: 0.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.81 -11.96 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482691442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.780 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds