Wall clock time and date at job start Tue Mar 31 2020 18:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48503 * 109.46694 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47147 * 299.99856 * 3 2 1 6 6 H 1.48500 * 109.46986 * 60.00040 * 3 2 1 7 7 C 1.38815 * 119.99332 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99236 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00407 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00254 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47426 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.05352 * 305.03698 * 11 10 9 13 13 C 1.54266 * 110.03482 * 66.45421 * 11 10 9 14 14 C 1.54891 * 104.31343 * 142.96208 * 13 11 10 15 15 C 1.54892 * 102.74959 * 321.99283 * 14 13 11 16 16 C 1.54224 * 110.14449 * 183.47935 * 11 10 9 17 17 H 1.09000 * 110.04153 * 121.41916 * 16 11 10 18 18 N 1.46493 * 110.02477 * 0.03884 * 16 11 10 19 19 C 1.34768 * 120.00418 * 156.33818 * 18 16 11 20 20 O 1.21701 * 119.99852 * 359.97438 * 19 18 16 21 21 C 1.46581 * 120.00583 * 179.97438 * 19 18 16 22 22 C 1.35873 * 125.42200 * 179.71708 * 21 19 18 23 23 C 1.39171 * 113.99866 * 179.79819 * 22 21 19 24 24 C 1.34365 * 113.99929 * 0.50352 * 23 22 21 25 25 S 1.71477 * 111.07657 * 359.71485 * 24 23 22 26 26 C 1.52370 * 110.38496 * 179.67946 * 24 23 22 27 27 C 1.54159 * 104.90409 * 342.45345 * 26 24 23 28 28 C 1.52824 * 136.18531 * 180.13731 * 23 22 21 29 29 H 0.96998 * 119.99833 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00104 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47127 * 59.99746 * 10 9 7 32 32 H 1.09002 * 109.47030 * 300.00484 * 10 9 7 33 33 H 1.09002 * 110.48609 * 24.21622 * 13 11 10 34 34 H 1.08998 * 110.48769 * 261.70715 * 13 11 10 35 35 H 1.09000 * 110.75322 * 80.30558 * 14 13 11 36 36 H 1.09002 * 110.75658 * 203.67757 * 14 13 11 37 37 H 1.08993 * 110.48715 * 156.62375 * 15 14 13 38 38 H 1.09001 * 110.48596 * 279.13315 * 15 14 13 39 39 H 0.97005 * 120.00160 * 336.33789 * 18 16 11 40 40 H 1.07999 * 122.99846 * 359.97438 * 22 21 19 41 41 H 1.09002 * 110.35108 * 101.31128 * 26 24 23 42 42 H 1.09002 * 110.35402 * 223.59481 * 26 24 23 43 43 H 1.08998 * 110.96296 * 268.59687 * 27 26 24 44 44 H 1.08998 * 110.96589 * 144.85261 * 27 26 24 45 45 H 1.08996 * 110.32848 * 316.89016 * 28 23 22 46 46 H 1.09000 * 110.33295 * 79.11381 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.0636 -4.8197 -0.0021 12 1 0.3743 -4.7223 0.8367 13 6 0.2796 -4.8443 -1.3304 14 6 0.1081 -6.3509 -1.6460 15 6 1.4620 -6.9514 -1.1927 16 6 1.8170 -6.1626 0.0846 17 1 1.4943 -6.7157 0.9667 18 7 3.2613 -5.9248 0.1425 19 6 4.0757 -6.8513 0.6852 20 8 3.6111 -7.8855 1.1277 21 6 5.5209 -6.6136 0.7426 22 6 6.4390 -7.4663 1.2682 23 6 7.7493 -7.0029 1.1945 24 6 7.8693 -5.7912 0.6265 25 16 6.3399 -5.1791 0.1503 26 6 9.3310 -5.3620 0.5953 27 6 10.0341 -6.2749 1.6194 28 6 9.1268 -7.5205 1.6068 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6852 -3.7151 0.8878 32 1 2.6839 -3.7142 -0.8921 33 1 0.8491 -4.3518 -2.1187 34 1 -0.6927 -4.3670 -1.2084 35 1 -0.7146 -6.7749 -1.0704 36 1 -0.0454 -6.5069 -2.7139 37 1 1.3526 -8.0123 -0.9679 38 1 2.2218 -6.8013 -1.9597 39 1 3.6316 -5.1003 -0.2098 40 1 6.1758 -8.4197 1.7018 41 1 9.7498 -5.5150 -0.3994 42 1 9.4257 -4.3171 0.8909 43 1 10.0495 -5.8137 2.6069 44 1 11.0432 -6.5242 1.2914 45 1 9.0820 -7.9666 2.6003 46 1 9.4913 -8.2472 0.8807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482691442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:26 Heat of formation + Delta-G solvation = -16.726052 kcal Electronic energy + Delta-G solvation = -26153.223544 eV Core-core repulsion = 22554.223296 eV Total energy + Delta-G solvation = -3599.000248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.37521 -40.36467 -39.17509 -36.25438 -35.34450 -34.81711 -33.32102 -30.26858 -29.90343 -29.34645 -28.11885 -26.37882 -24.66423 -24.27024 -22.79847 -21.69435 -21.40197 -20.49549 -19.78518 -19.09374 -19.01922 -17.33201 -17.23472 -16.62682 -16.53138 -16.30572 -16.04109 -15.83209 -15.29355 -15.24743 -15.11363 -14.77676 -14.46531 -13.80223 -13.77364 -13.53385 -13.35406 -13.14940 -12.97190 -12.88938 -12.80218 -12.71215 -12.38478 -12.12853 -12.05686 -11.96026 -11.88060 -11.80819 -11.76173 -11.71276 -11.56776 -11.48087 -11.23461 -10.95590 -10.23284 -9.69359 -9.36298 -9.01247 -7.94982 -5.23974 -0.54216 0.30397 0.90108 1.25203 1.47964 1.48505 1.58404 2.00456 2.07122 2.55657 3.34284 3.39320 3.50044 3.55846 3.64712 3.81757 3.84036 4.14634 4.15316 4.17828 4.34730 4.35814 4.43693 4.46240 4.50348 4.61717 4.62482 4.73031 4.80029 4.80245 4.86705 4.89806 4.94294 4.96928 5.04487 5.15040 5.19794 5.21332 5.24365 5.32146 5.35519 5.37811 5.44428 5.46662 5.50986 6.26125 6.31799 6.98217 7.33914 8.07485 8.32173 9.28659 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009497 B = 0.003575 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.654973 B = 7830.487427 C =10423.398146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.738 5.738 10 C 0.159 3.841 11 C -0.101 4.101 12 H 0.077 0.923 13 C -0.110 4.110 14 C -0.111 4.111 15 C -0.125 4.125 16 C 0.152 3.848 17 H 0.085 0.915 18 N -0.714 5.714 19 C 0.591 3.409 20 O -0.568 6.568 21 C -0.295 4.295 22 C -0.038 4.038 23 C -0.154 4.154 24 C -0.219 4.219 25 S 0.222 5.778 26 C -0.049 4.049 27 C -0.111 4.111 28 C -0.056 4.056 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.016 0.984 32 H 0.025 0.975 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.405 0.595 40 H 0.149 0.851 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.144 -16.598 -1.030 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.381 5.381 10 C 0.032 3.968 11 C -0.120 4.120 12 H 0.095 0.905 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.164 4.164 16 C 0.048 3.952 17 H 0.103 0.897 18 N -0.367 5.367 19 C 0.379 3.621 20 O -0.449 6.449 21 C -0.415 4.415 22 C -0.072 4.072 23 C -0.166 4.166 24 C -0.339 4.339 25 S 0.492 5.508 26 C -0.088 4.088 27 C -0.150 4.150 28 C -0.095 4.095 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.244 0.756 40 H 0.167 0.833 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.125 0.875 45 H 0.101 0.899 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.439 -15.835 -1.447 23.600 hybrid contribution 0.081 0.242 0.699 0.744 sum 17.521 -15.593 -0.748 23.466 Atomic orbital electron populations 1.69821 1.06591 1.25983 1.59457 1.25540 0.96361 1.00999 1.03650 0.85117 0.78394 0.79920 0.76615 1.18851 1.21981 1.22244 1.19662 0.91557 0.85211 1.41160 0.90495 1.42485 1.05659 1.00759 1.89207 1.20768 0.93860 0.85017 0.97107 1.22192 0.97250 0.92726 0.99866 0.90500 1.22295 0.99686 0.97281 0.95480 1.22444 0.96609 0.93689 1.02139 1.22716 0.98183 0.99542 0.95935 1.21746 0.78222 0.95425 0.99843 0.89716 1.46272 1.07952 1.21286 1.61144 1.17149 0.84814 0.83172 0.76992 1.90765 1.76851 1.27649 1.49663 1.24162 0.96996 1.03145 1.17169 1.20373 0.90669 0.99820 0.96353 1.20735 0.95705 0.96027 1.04134 1.26213 1.02132 1.00691 1.04876 1.83144 0.95050 1.16064 1.56507 1.21099 0.84630 1.01120 1.01916 1.22337 0.99350 0.94026 0.99295 1.21121 0.87153 0.98650 1.02528 0.94024 0.79208 0.96608 0.95764 0.92240 0.91945 0.90208 0.89765 0.90699 0.91173 0.75593 0.83331 0.88199 0.89665 0.90391 0.87472 0.89892 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.70 13.06 21.65 0.28 -58.41 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 3 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 7 C -0.24 -13.41 9.99 84.04 0.84 -12.57 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -36.85 5.43 -343.46 -1.87 -38.72 16 10 C 0.16 6.24 4.18 86.38 0.36 6.60 16 11 C -0.10 -3.28 2.99 -9.95 -0.03 -3.31 16 12 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 13 C -0.11 -3.27 6.00 31.67 0.19 -3.08 16 14 C -0.11 -2.56 6.91 31.89 0.22 -2.34 16 15 C -0.13 -3.12 6.52 31.67 0.21 -2.92 16 16 C 0.15 4.46 3.21 45.84 0.15 4.61 16 17 H 0.08 2.62 7.60 -2.39 -0.02 2.60 16 18 N -0.71 -21.38 4.46 -442.62 -1.97 -23.35 16 19 C 0.59 18.78 7.77 86.42 0.67 19.45 16 20 O -0.57 -20.87 16.50 -4.35 -0.07 -20.94 16 21 C -0.29 -8.16 6.41 23.90 0.15 -8.00 16 22 C -0.04 -0.94 9.99 21.94 0.22 -0.72 16 23 C -0.15 -3.10 6.49 -19.84 -0.13 -3.23 16 24 C -0.22 -4.36 7.10 25.34 0.18 -4.18 16 25 S 0.22 5.24 22.15 -56.49 -1.25 3.99 16 26 C -0.05 -0.62 6.80 30.78 0.21 -0.41 16 27 C -0.11 -1.03 7.11 31.36 0.22 -0.81 16 28 C -0.06 -0.69 6.81 30.91 0.21 -0.48 16 29 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.38 19.98 7.51 -92.71 -0.70 19.28 16 31 H 0.02 0.65 7.51 -2.39 -0.02 0.63 16 32 H 0.02 0.93 7.07 -2.39 -0.02 0.92 16 33 H 0.06 1.93 7.78 -2.39 -0.02 1.91 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.74 8.05 -2.39 -0.02 1.72 16 39 H 0.41 11.90 4.95 -92.70 -0.46 11.44 16 40 H 0.15 3.56 8.04 -2.91 -0.02 3.54 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -68.54 380.49 1.13 -67.41 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.15 Total: 37.53 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.14 Total: -15.08 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -3.55 Total: -120.48 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.07 Total: -20.94 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.25 Total: 3.99 kcal Total: -68.54 1.13 -67.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482691442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.680 kcal (2) G-P(sol) polarization free energy of solvation -68.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds