Wall clock time and date at job start Tue Mar 31 2020 17:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35421 * 117.00054 * 2 1 4 4 C 1.36101 * 119.71502 * 179.97438 * 3 2 1 5 5 C 1.39752 * 120.24219 * 180.02562 * 4 3 2 6 6 C 1.36663 * 119.47969 * 359.97438 * 5 4 3 7 7 C 1.39919 * 119.38569 * 0.02562 * 6 5 4 8 8 C 1.40945 * 132.85873 * 179.97438 * 7 6 5 9 9 C 1.46438 * 126.59046 * 359.97438 * 8 7 6 10 10 O 1.21739 * 120.00421 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99524 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99638 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46900 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47164 * 60.00014 * 13 12 11 15 15 O 1.42903 * 109.47171 * 299.99748 * 13 12 11 16 16 C 1.53003 * 109.47376 * 180.02562 * 13 12 11 17 17 N 1.46494 * 109.47283 * 185.00021 * 16 13 12 18 18 C 1.36937 * 120.00022 * 179.97438 * 17 16 13 19 19 H 1.08002 * 120.00269 * 0.02562 * 18 17 16 20 20 C 1.38819 * 120.00106 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99813 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99927 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46910 * 90.00368 * 22 20 18 24 24 H 1.48500 * 109.47076 * 210.00564 * 22 20 18 25 25 H 1.48496 * 109.47174 * 330.00806 * 22 20 18 26 26 C 1.40675 * 106.80944 * 180.26073 * 8 7 6 27 27 N 1.30648 * 108.75816 * 359.54954 * 26 8 7 28 28 N 1.36467 * 119.72046 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.46974 * 299.99613 * 1 2 3 30 30 H 1.08993 * 109.46828 * 59.99669 * 1 2 3 31 31 H 1.08996 * 109.47199 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.87675 * 0.02925 * 4 3 2 33 33 H 1.07997 * 120.26033 * 180.02562 * 5 4 3 34 34 H 1.07993 * 120.30692 * 180.02562 * 6 5 4 35 35 H 0.96996 * 120.00052 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.47200 * 60.00094 * 12 11 9 37 37 H 1.08997 * 109.47487 * 300.00148 * 12 11 9 38 38 H 0.96700 * 114.00311 * 300.00378 * 15 13 12 39 39 H 1.09005 * 109.46682 * 304.99749 * 16 13 12 40 40 H 1.08999 * 109.47221 * 64.99915 * 16 13 12 41 41 H 0.96999 * 120.00388 * 359.97438 * 17 16 13 42 42 H 0.96997 * 120.00150 * 179.97438 * 21 20 18 43 43 H 1.07998 * 125.61932 * 179.74105 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 6 3.4033 1.2711 0.0005 5 6 4.0492 2.5104 0.0011 6 6 3.3051 3.6566 0.0005 7 6 1.9086 3.5686 0.0000 8 6 0.8868 4.5394 -0.0001 9 6 1.0639 5.9931 0.0008 10 8 2.1840 6.4699 0.0023 11 7 -0.0134 6.8031 0.0010 12 6 0.1637 8.2573 0.0026 13 6 -1.2066 8.9379 0.0032 14 1 -1.7607 8.6384 0.8928 15 8 -1.9328 8.5477 -1.1641 16 6 -1.0218 10.4567 0.0041 17 7 -2.3286 11.1076 0.1251 18 6 -2.4134 12.4741 0.1483 19 1 -1.5168 13.0721 0.0770 20 6 -3.6517 13.0910 0.2624 21 7 -4.7444 12.3623 0.3488 22 14 -3.7672 14.9551 0.2947 23 1 -3.9180 15.4658 -1.0915 24 1 -4.9433 15.3642 1.1038 25 1 -2.5320 15.5172 0.8976 26 6 -0.3356 3.8434 0.0054 27 7 -0.0887 2.5605 -0.0011 28 7 1.2950 2.3475 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9850 0.3612 0.0005 33 1 5.1280 2.5619 0.0011 34 1 3.7903 4.6214 0.0005 35 1 -0.9059 6.4231 0.0010 36 1 0.7181 8.5567 -0.8869 37 1 0.7172 8.5550 0.8930 38 1 -1.4977 8.7830 -1.9950 39 1 -0.3927 10.7456 0.8461 40 1 -0.5469 10.7655 -0.9271 41 1 -3.1339 10.5706 0.1887 42 1 -5.6097 12.7932 0.4289 43 1 -1.3166 4.2951 0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482735563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:02 Heat of formation + Delta-G solvation = 6.120779 kcal Electronic energy + Delta-G solvation = -27541.153379 eV Core-core repulsion = 23396.850629 eV Total energy + Delta-G solvation = -4144.302750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.77659 -39.87433 -39.08110 -37.50283 -37.28194 -34.31295 -33.95188 -32.82345 -31.32430 -31.23954 -29.99838 -28.86344 -27.22800 -25.49150 -24.09627 -23.62871 -22.76495 -22.30395 -21.38839 -20.36562 -18.74638 -17.79374 -17.23212 -17.18528 -17.05581 -16.83670 -16.16666 -15.92611 -15.77347 -15.30259 -15.19095 -14.89955 -14.48762 -14.33843 -13.94772 -13.77989 -13.54788 -12.97232 -12.81725 -12.79585 -12.71139 -12.59759 -12.57522 -12.28262 -11.82749 -11.57976 -11.12357 -10.95848 -10.81466 -10.59627 -10.41546 -10.17622 -9.98992 -9.88005 -9.79536 -9.48277 -9.03958 -8.89604 -7.83756 -6.93352 -5.75850 -3.05338 0.26048 0.56716 1.42461 1.80379 2.34023 2.78886 3.20729 3.44159 3.44577 3.49204 3.50986 3.86800 4.15245 4.33321 4.55939 4.57678 4.65855 4.73819 4.78876 4.82593 4.82848 4.90739 5.08141 5.16735 5.18687 5.29124 5.52586 5.56619 5.65702 5.77135 5.81438 5.87342 5.93665 5.98756 6.09077 6.21265 6.43309 6.47742 6.53490 6.69352 7.03249 7.58087 7.69099 7.95345 8.30774 8.42389 9.53992 10.10771 10.46375 11.46550 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.001878 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.071699 B =14904.483470 C =15695.435598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.350 3.650 4 C -0.205 4.205 5 C -0.034 4.034 6 C -0.148 4.148 7 C 0.196 3.804 8 C -0.316 4.316 9 C 0.598 3.402 10 O -0.555 6.555 11 N -0.718 5.718 12 C 0.093 3.907 13 C 0.089 3.911 14 H 0.105 0.895 15 O -0.553 6.553 16 C 0.127 3.873 17 N -0.726 5.726 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.131 3.869 27 N -0.332 5.332 28 N -0.308 5.308 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.402 0.598 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.373 0.627 39 H 0.029 0.971 40 H 0.023 0.977 41 H 0.388 0.612 42 H 0.255 0.745 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.459 -27.831 -1.183 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.210 6.210 3 C 0.199 3.801 4 C -0.227 4.227 5 C -0.058 4.058 6 C -0.167 4.167 7 C 0.076 3.924 8 C -0.330 4.330 9 C 0.387 3.613 10 O -0.435 6.435 11 N -0.370 5.370 12 C -0.031 4.031 13 C 0.029 3.971 14 H 0.123 0.877 15 O -0.358 6.358 16 C -0.002 4.002 17 N -0.371 5.371 18 C -0.374 4.374 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.050 4.050 27 N -0.153 5.153 28 N -0.083 5.083 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.182 0.818 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.220 0.780 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.223 0.777 42 H 0.065 0.935 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 15.261 -28.934 -0.729 32.720 hybrid contribution -0.454 1.790 -0.331 1.876 sum 14.808 -27.143 -1.059 30.938 Atomic orbital electron populations 1.23446 0.74894 1.03866 1.04059 1.86127 1.24188 1.22771 1.87926 1.19297 0.88890 0.75956 0.95983 1.20048 0.88132 1.00959 1.13603 1.21124 1.01272 0.90156 0.93201 1.20818 0.89412 1.01405 1.05110 1.19220 0.93497 0.83683 0.95969 1.19708 0.91047 0.93665 1.28610 1.16753 0.84478 0.84287 0.75825 1.90771 1.24069 1.76819 1.51791 1.45608 1.08926 1.06678 1.75740 1.22064 0.98613 0.79213 1.03207 1.22408 0.90337 0.94799 0.89576 0.87736 1.86567 1.50656 1.82871 1.15728 1.21204 0.90712 0.89468 0.98789 1.42239 1.02254 1.03926 1.88660 1.19225 0.92740 0.82775 1.42668 0.91191 1.24766 0.95432 0.97901 1.02847 1.69674 0.97285 1.33933 1.56965 0.86173 0.77026 0.85427 0.77450 1.21706 1.21753 1.20745 1.24226 0.99293 0.90114 0.91408 1.77633 0.86345 1.18306 1.32972 1.46670 1.07028 1.05546 1.49034 0.90980 0.90976 0.87963 0.81863 0.82953 0.81832 0.76317 0.91053 0.90420 0.77971 0.95336 0.95891 0.77739 0.93489 0.78148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.60 101.05 0.97 1.18 16 2 O -0.30 -2.51 10.45 -17.96 -0.19 -2.69 16 3 C 0.35 3.15 7.49 -16.26 -0.12 3.03 16 4 C -0.21 -1.36 9.90 -39.78 -0.39 -1.76 16 5 C -0.03 -0.22 10.08 -39.58 -0.40 -0.62 16 6 C -0.15 -1.41 9.72 -39.52 -0.38 -1.79 16 7 C 0.20 2.24 6.76 -84.06 -0.57 1.67 16 8 C -0.32 -3.75 6.17 -104.65 -0.65 -4.39 16 9 C 0.60 8.08 7.78 -12.96 -0.10 7.98 16 10 O -0.55 -9.08 15.70 5.15 0.08 -9.00 16 11 N -0.72 -8.58 5.44 -61.69 -0.34 -8.92 16 12 C 0.09 1.22 5.34 -4.04 -0.02 1.20 16 13 C 0.09 1.34 3.09 -26.73 -0.08 1.26 16 14 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 15 O -0.55 -8.51 13.03 -35.23 -0.46 -8.97 16 16 C 0.13 2.44 5.90 -4.04 -0.02 2.42 16 17 N -0.73 -18.32 5.55 -59.91 -0.33 -18.65 16 18 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 22 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.13 1.28 11.44 -17.14 -0.20 1.08 16 27 N -0.33 -3.45 8.78 30.76 0.27 -3.18 16 28 N -0.31 -3.27 3.78 -10.65 -0.04 -3.31 16 29 H 0.07 0.54 7.13 -51.93 -0.37 0.17 16 30 H 0.07 0.54 7.13 -51.93 -0.37 0.17 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 34 H 0.16 1.63 7.11 -52.49 -0.37 1.26 16 35 H 0.40 4.08 7.27 -40.82 -0.30 3.78 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.37 4.80 9.05 45.56 0.41 5.21 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.39 10.47 7.67 -40.82 -0.31 10.16 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.20 1.30 7.46 -52.49 -0.39 0.90 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -35.83 369.32 -6.58 -42.41 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -4.63 Total: 13.12 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.21 Total: 3.80 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.29 Total: -61.70 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.57 Total: -20.67 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.83 -6.58 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482735563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.535 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds