Wall clock time and date at job start Tue Mar 31 2020 17:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35421 * 117.00054 * 2 1 4 4 C 1.36101 * 119.71502 * 179.97438 * 3 2 1 5 5 C 1.39752 * 120.24219 * 180.02562 * 4 3 2 6 6 C 1.36663 * 119.47969 * 359.97438 * 5 4 3 7 7 C 1.39919 * 119.38569 * 0.02562 * 6 5 4 8 8 C 1.40945 * 132.85873 * 179.97438 * 7 6 5 9 9 C 1.46438 * 126.59046 * 359.97438 * 8 7 6 10 10 O 1.21739 * 120.00421 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99524 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99638 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46900 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47164 * 60.00014 * 13 12 11 15 15 O 1.42903 * 109.47171 * 299.99748 * 13 12 11 16 16 C 1.53003 * 109.47376 * 180.02562 * 13 12 11 17 17 N 1.46494 * 109.47283 * 185.00021 * 16 13 12 18 18 C 1.36937 * 120.00022 * 179.97438 * 17 16 13 19 19 H 1.08002 * 120.00269 * 0.02562 * 18 17 16 20 20 C 1.38819 * 120.00106 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99813 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99927 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46910 * 90.00368 * 22 20 18 24 24 H 1.48500 * 109.47076 * 210.00564 * 22 20 18 25 25 H 1.48496 * 109.47174 * 330.00806 * 22 20 18 26 26 C 1.40675 * 106.80944 * 180.26073 * 8 7 6 27 27 N 1.30648 * 108.75816 * 359.54954 * 26 8 7 28 28 N 1.36467 * 119.72046 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.46974 * 299.99613 * 1 2 3 30 30 H 1.08993 * 109.46828 * 59.99669 * 1 2 3 31 31 H 1.08996 * 109.47199 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.87675 * 0.02925 * 4 3 2 33 33 H 1.07997 * 120.26033 * 180.02562 * 5 4 3 34 34 H 1.07993 * 120.30692 * 180.02562 * 6 5 4 35 35 H 0.96996 * 120.00052 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.47200 * 60.00094 * 12 11 9 37 37 H 1.08997 * 109.47487 * 300.00148 * 12 11 9 38 38 H 0.96700 * 114.00311 * 300.00378 * 15 13 12 39 39 H 1.09005 * 109.46682 * 304.99749 * 16 13 12 40 40 H 1.08999 * 109.47221 * 64.99915 * 16 13 12 41 41 H 0.96999 * 120.00388 * 359.97438 * 17 16 13 42 42 H 0.96997 * 120.00150 * 179.97438 * 21 20 18 43 43 H 1.07998 * 125.61932 * 179.74105 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 6 3.4033 1.2711 0.0005 5 6 4.0492 2.5104 0.0011 6 6 3.3051 3.6566 0.0005 7 6 1.9086 3.5686 0.0000 8 6 0.8868 4.5394 -0.0001 9 6 1.0639 5.9931 0.0008 10 8 2.1840 6.4699 0.0023 11 7 -0.0134 6.8031 0.0010 12 6 0.1637 8.2573 0.0026 13 6 -1.2066 8.9379 0.0032 14 1 -1.7607 8.6384 0.8928 15 8 -1.9328 8.5477 -1.1641 16 6 -1.0218 10.4567 0.0041 17 7 -2.3286 11.1076 0.1251 18 6 -2.4134 12.4741 0.1483 19 1 -1.5168 13.0721 0.0770 20 6 -3.6517 13.0910 0.2624 21 7 -4.7444 12.3623 0.3488 22 14 -3.7672 14.9551 0.2947 23 1 -3.9180 15.4658 -1.0915 24 1 -4.9433 15.3642 1.1038 25 1 -2.5320 15.5172 0.8976 26 6 -0.3356 3.8434 0.0054 27 7 -0.0887 2.5605 -0.0011 28 7 1.2950 2.3475 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9850 0.3612 0.0005 33 1 5.1280 2.5619 0.0011 34 1 3.7903 4.6214 0.0005 35 1 -0.9059 6.4231 0.0010 36 1 0.7181 8.5567 -0.8869 37 1 0.7172 8.5550 0.8930 38 1 -1.4977 8.7830 -1.9950 39 1 -0.3927 10.7456 0.8461 40 1 -0.5469 10.7655 -0.9271 41 1 -3.1339 10.5706 0.1887 42 1 -5.6097 12.7932 0.4289 43 1 -1.3166 4.2951 0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482735563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:01 Heat of formation + Delta-G solvation = -23.382838 kcal Electronic energy + Delta-G solvation = -27542.432751 eV Core-core repulsion = 23396.850629 eV Total energy + Delta-G solvation = -4145.582122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.48241 -40.72414 -39.93535 -38.78260 -37.93106 -36.05624 -35.19068 -33.56336 -33.16426 -31.93017 -31.03423 -29.99801 -27.98287 -26.94466 -25.01005 -24.67404 -23.74896 -23.43470 -22.71941 -21.32107 -19.57595 -19.16113 -18.50485 -18.04727 -17.85628 -17.54615 -17.22114 -17.12710 -16.59006 -16.40175 -16.14011 -16.07237 -15.65806 -15.40473 -15.34910 -14.94116 -14.56260 -14.53115 -14.14676 -13.80269 -13.40909 -13.39600 -13.32561 -13.18399 -13.16286 -12.94337 -12.74435 -12.20493 -12.14884 -11.95730 -11.84180 -11.78374 -11.15458 -11.11925 -10.97034 -10.80506 -10.55797 -10.08123 -8.99931 -8.56103 -7.94069 -5.23334 -0.41636 -0.10591 0.74647 0.99833 1.48324 1.50136 1.58616 1.76226 2.09342 2.21635 2.54398 2.57490 3.14438 3.37638 3.51795 3.53625 3.63372 3.66655 3.96147 4.05079 4.07291 4.19877 4.24327 4.25658 4.27237 4.32958 4.47769 4.57308 4.64299 4.66748 4.79053 4.94731 4.96725 5.13870 5.20216 5.24870 5.29376 5.39873 5.45161 5.49878 5.76595 6.27246 6.32141 6.62536 6.82865 7.31147 7.34294 8.09930 8.33002 9.29170 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.001878 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.071699 B =14904.483470 C =15695.435598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.304 6.304 3 C 0.329 3.671 4 C -0.191 4.191 5 C -0.007 4.007 6 C -0.176 4.176 7 C 0.181 3.819 8 C -0.349 4.349 9 C 0.599 3.401 10 O -0.591 6.591 11 N -0.710 5.710 12 C 0.107 3.893 13 C 0.109 3.891 14 H 0.101 0.899 15 O -0.562 6.562 16 C 0.122 3.878 17 N -0.740 5.740 18 C -0.247 4.247 19 H 0.077 0.923 20 C -0.077 4.077 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.137 3.863 27 N -0.344 5.344 28 N -0.312 5.312 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.198 0.802 33 H 0.194 0.806 34 H 0.153 0.847 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.385 0.615 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.148 -29.275 -1.354 33.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.212 6.212 3 C 0.177 3.823 4 C -0.213 4.213 5 C -0.029 4.029 6 C -0.196 4.196 7 C 0.061 3.939 8 C -0.363 4.363 9 C 0.389 3.611 10 O -0.473 6.473 11 N -0.361 5.361 12 C -0.018 4.018 13 C 0.049 3.951 14 H 0.119 0.881 15 O -0.369 6.369 16 C -0.005 4.005 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.618 5.618 22 Si 0.804 3.196 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.194 1.194 26 C -0.044 4.044 27 N -0.165 5.165 28 N -0.087 5.087 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.215 0.785 33 H 0.211 0.789 34 H 0.171 0.829 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.234 0.766 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 16.975 -30.401 -0.913 34.831 hybrid contribution -0.824 2.059 -0.297 2.237 sum 16.152 -28.342 -1.210 32.643 Atomic orbital electron populations 1.23512 0.74282 1.05382 1.03005 1.86131 1.24792 1.22363 1.87941 1.19887 0.89743 0.75875 0.96788 1.20617 0.87411 1.02318 1.10913 1.21608 1.03035 0.88828 0.89470 1.20906 0.89000 1.02268 1.07385 1.19517 0.94374 0.83991 0.95985 1.19616 0.92271 0.92852 1.31595 1.16970 0.84023 0.85044 0.75073 1.90738 1.25333 1.77525 1.53754 1.45459 1.09265 1.06010 1.75367 1.21806 0.97005 0.79807 1.03192 1.22089 0.91260 0.92199 0.89551 0.88138 1.86548 1.51238 1.82733 1.16361 1.21413 0.88159 0.91895 0.99047 1.42424 1.03926 1.03265 1.88679 1.19653 0.92932 0.84331 1.41010 0.90543 1.25609 0.95271 1.02439 1.03623 1.69832 0.97565 1.35606 1.58847 0.85115 0.77079 0.80111 0.77289 1.21397 1.22205 1.19377 1.24618 0.99812 0.89803 0.90178 1.77603 0.86682 1.18522 1.33669 1.46802 1.07082 1.05817 1.49006 0.92017 0.92012 0.85182 0.78465 0.78930 0.82903 0.75190 0.90888 0.90701 0.76627 0.94836 0.95073 0.79126 0.94009 0.75653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.60 113.37 1.09 1.49 16 2 O -0.30 -4.55 10.45 -87.16 -0.91 -5.46 16 3 C 0.33 5.40 7.49 83.47 0.63 6.03 16 4 C -0.19 -1.96 9.90 22.14 0.22 -1.74 16 5 C -0.01 -0.07 10.08 22.27 0.22 0.16 16 6 C -0.18 -3.24 9.72 22.31 0.22 -3.02 16 7 C 0.18 4.16 6.76 39.46 0.27 4.42 16 8 C -0.35 -8.42 6.17 -19.88 -0.12 -8.54 16 9 C 0.60 16.43 7.78 86.38 0.67 17.10 16 10 O -0.59 -19.83 15.70 -4.47 -0.07 -19.90 16 11 N -0.71 -16.77 5.44 -467.29 -2.54 -19.31 16 12 C 0.11 2.74 5.34 86.38 0.46 3.20 16 13 C 0.11 3.23 3.09 30.60 0.09 3.32 16 14 H 0.10 3.10 8.14 -2.39 -0.02 3.09 16 15 O -0.56 -16.89 13.03 -148.98 -1.94 -18.83 16 16 C 0.12 4.63 5.90 86.38 0.51 5.14 16 17 N -0.74 -37.41 5.55 -343.45 -1.91 -39.32 16 18 C -0.25 -13.86 9.99 84.04 0.84 -13.02 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 21 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 22 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 26 C 0.14 2.66 11.44 85.46 0.98 3.64 16 27 N -0.34 -7.12 8.78 -56.59 -0.50 -7.62 16 28 N -0.31 -6.50 3.78 -298.39 -1.13 -7.63 16 29 H 0.06 0.90 7.13 -2.39 -0.02 0.89 16 30 H 0.06 0.90 7.13 -2.39 -0.02 0.89 16 31 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 33 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 34 H 0.15 3.13 7.11 -2.91 -0.02 3.11 16 35 H 0.41 8.10 7.27 -92.71 -0.67 7.43 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.38 9.52 9.05 -74.06 -0.67 8.85 16 39 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.38 20.57 7.67 -92.71 -0.71 19.86 16 42 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.23 2.76 7.46 -2.91 -0.02 2.74 16 Total: -1.00 -78.28 369.32 -1.11 -79.39 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.97 Total: 35.67 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.54 Total: 14.18 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -5.79 Total: -133.42 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -2.92 Total: -44.19 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -78.28 -1.11 -79.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482735563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.005 kcal (2) G-P(sol) polarization free energy of solvation -78.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds