Wall clock time and date at job start Tue Mar 31 2020 18:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99672 * 2 1 4 4 H 1.48497 * 109.47292 * 239.99676 * 3 2 1 5 5 H 1.48502 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47016 * 120.00080 * 3 2 1 7 7 C 1.38801 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00019 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47589 * 295.00690 * 11 10 9 13 13 N 1.46500 * 109.47003 * 55.00255 * 11 10 9 14 14 C 1.34773 * 120.00509 * 204.99732 * 13 11 10 15 15 O 1.21704 * 119.99823 * 0.02562 * 14 13 11 16 16 C 1.46586 * 120.00540 * 179.97438 * 14 13 11 17 17 C 1.36118 * 125.45687 * 179.97438 * 16 14 13 18 18 C 1.38278 * 114.09716 * 179.97438 * 17 16 14 19 19 C 1.35235 * 113.92611 * 0.02562 * 18 17 16 20 20 S 1.70755 * 111.11221 * 359.76458 * 19 18 17 21 21 C 1.51720 * 124.32976 * 179.97438 * 19 18 17 22 22 C 1.53089 * 108.75638 * 343.44972 * 21 19 18 23 23 C 1.53146 * 108.99344 * 50.07649 * 22 21 19 24 24 C 1.52329 * 123.07439 * 179.97438 * 18 17 16 25 25 C 1.52996 * 109.47215 * 175.00179 * 11 10 9 26 26 C 1.53002 * 117.49888 * 111.25646 * 25 11 10 27 27 C 1.53000 * 117.50107 * 179.91408 * 25 11 10 28 28 H 0.97001 * 120.00226 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99631 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46694 * 60.00472 * 10 9 7 31 31 H 1.08996 * 109.47259 * 300.00462 * 10 9 7 32 32 H 0.97006 * 119.99923 * 24.99965 * 13 11 10 33 33 H 1.07995 * 122.94917 * 359.93162 * 17 16 14 34 34 H 1.09006 * 109.58499 * 223.66380 * 21 19 18 35 35 H 1.09002 * 109.58838 * 103.22958 * 21 19 18 36 36 H 1.09002 * 109.54783 * 290.22399 * 22 21 19 37 37 H 1.08999 * 109.55185 * 169.93633 * 22 21 19 38 38 H 1.09004 * 109.50969 * 169.23080 * 23 22 21 39 39 H 1.09005 * 109.51092 * 49.07866 * 23 22 21 40 40 H 1.09004 * 109.57690 * 282.46348 * 24 18 17 41 41 H 1.09002 * 109.58267 * 42.86561 * 24 18 17 42 42 H 1.09002 * 115.54951 * 325.58620 * 25 11 10 43 43 H 1.09000 * 117.49996 * 215.00804 * 26 25 11 44 44 H 1.08999 * 117.49664 * 0.02562 * 26 25 11 45 45 H 1.09008 * 117.49673 * 359.97438 * 27 25 11 46 46 H 1.08999 * 117.49959 * 144.99502 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4973 -4.8139 0.9309 13 7 0.1449 -4.6758 -1.1319 14 6 -1.0795 -5.2367 -1.0813 15 8 -1.4220 -5.8623 -0.0952 16 6 -1.9993 -5.0923 -2.2136 17 6 -3.2560 -5.6108 -2.2811 18 6 -3.9198 -5.3303 -3.4612 19 6 -3.1981 -4.5915 -4.3342 20 16 -1.6585 -4.2174 -3.6976 21 6 -3.6960 -4.1501 -5.6977 22 6 -4.9153 -4.9959 -6.0740 23 6 -5.9077 -4.9862 -4.9077 24 6 -5.3356 -5.8106 -3.7530 25 6 1.8248 -6.1411 -0.1258 26 6 1.8338 -7.0695 1.0903 27 6 1.0023 -7.4311 -0.1430 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 2.6847 -3.7144 0.8906 31 1 2.6849 -3.7145 -0.8894 32 1 0.4177 -4.1769 -1.9178 33 1 -3.6957 -6.1909 -1.4833 34 1 -2.9089 -4.2937 -6.4381 35 1 -3.9784 -3.0980 -5.6607 36 1 -4.6005 -6.0196 -6.2767 37 1 -5.3904 -4.5766 -6.9609 38 1 -6.8538 -5.4203 -5.2311 39 1 -6.0710 -3.9604 -4.5772 40 1 -5.3137 -6.8642 -4.0317 41 1 -5.9564 -5.6779 -2.8669 42 1 2.7239 -6.1092 -0.7413 43 1 2.7387 -7.6484 1.2749 44 1 1.2973 -6.7391 1.9797 45 1 -0.0810 -7.3384 -0.0643 46 1 1.3602 -8.2478 -0.7698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483603696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:30 Heat of formation + Delta-G solvation = 13.911870 kcal Electronic energy + Delta-G solvation = -26311.270435 eV Core-core repulsion = 22713.598747 eV Total energy + Delta-G solvation = -3597.671688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.88608 -39.11671 -37.15192 -35.03516 -34.93544 -33.39487 -31.18388 -31.07835 -29.38738 -27.85846 -24.56647 -23.93884 -23.74314 -22.14910 -21.69494 -21.42627 -20.20215 -20.04175 -18.47344 -17.81183 -17.13014 -16.12460 -16.00521 -15.31165 -15.07210 -14.95524 -14.74357 -14.34652 -14.06522 -13.89155 -13.74045 -13.16844 -13.09291 -12.89095 -12.82992 -12.76767 -12.57318 -12.11509 -11.68501 -11.52841 -11.20230 -11.14087 -11.10337 -11.01804 -10.90066 -10.85032 -10.79903 -10.49237 -10.21152 -10.12157 -9.93599 -9.71874 -9.62617 -8.91495 -8.71187 -8.51678 -8.27755 -6.96706 -5.77434 -3.07910 0.62407 1.54384 1.99138 2.38995 3.35311 3.43069 3.45289 3.47577 3.48602 4.15688 4.44358 4.55576 4.60148 4.64688 4.90514 4.91124 4.96929 5.11248 5.19253 5.28732 5.30097 5.31239 5.44320 5.48236 5.53101 5.55532 5.60794 5.72830 5.75662 5.79601 5.85558 5.87045 5.91336 6.01978 6.07249 6.10755 6.23537 6.30102 6.37993 6.46133 6.48012 6.54500 6.67109 6.92099 7.67569 7.81365 8.39753 8.47325 9.51554 10.06836 10.42452 11.44631 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.003843 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.381990 B = 7284.715292 C = 9634.702827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.090 0.910 13 N -0.702 5.702 14 C 0.594 3.406 15 O -0.537 6.537 16 C -0.257 4.257 17 C -0.057 4.057 18 C -0.121 4.121 19 C -0.204 4.204 20 S 0.214 5.786 21 C -0.049 4.049 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.054 4.054 25 C -0.164 4.164 26 C -0.170 4.170 27 C -0.185 4.185 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.037 0.963 31 H 0.025 0.975 32 H 0.401 0.599 33 H 0.148 0.852 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.760 -14.424 -11.779 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.108 0.892 13 N -0.351 5.351 14 C 0.381 3.619 15 O -0.417 6.417 16 C -0.378 4.378 17 C -0.090 4.090 18 C -0.134 4.134 19 C -0.323 4.323 20 S 0.485 5.515 21 C -0.088 4.088 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.094 4.094 25 C -0.184 4.184 26 C -0.207 4.207 27 C -0.222 4.222 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.236 0.764 33 H 0.166 0.834 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.135 0.865 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.544 -13.869 -11.593 19.224 hybrid contribution -0.805 0.493 0.222 0.969 sum -7.348 -13.376 -11.371 19.032 Atomic orbital electron populations 1.69663 1.05093 1.25812 1.57228 1.24742 0.95483 0.97661 1.02754 0.86275 0.78520 0.83546 0.77848 1.21254 1.21696 1.21253 1.19161 0.90995 0.84017 1.43356 0.91159 1.42349 1.06000 0.99709 1.89627 1.20927 0.92990 0.85060 0.99061 1.20845 0.90075 0.92949 0.89625 0.89185 1.45829 1.14259 1.54158 1.20872 1.16863 0.80950 0.78824 0.85275 1.90720 1.76219 1.42271 1.32485 1.24339 1.00963 1.11606 1.00887 1.20512 0.92114 0.98703 0.97641 1.19430 0.98044 1.02267 0.93615 1.24647 1.00010 1.05714 1.01974 1.83181 1.12010 1.48865 1.07397 1.20377 0.97885 1.00170 0.90412 1.21546 0.95286 1.00376 0.98060 1.21557 0.98137 1.00899 0.95236 1.20510 0.90782 0.99289 0.98772 1.22650 1.01506 0.91405 1.02803 1.22895 1.02016 1.03070 0.92761 1.23271 1.00721 0.97428 1.00798 0.93418 0.77998 0.94492 0.95735 0.76404 0.83428 0.90387 0.89951 0.91495 0.91206 0.91435 0.91471 0.90738 0.90583 0.87823 0.89183 0.88711 0.86493 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.34 5.43 -59.91 -0.33 -18.66 16 10 C 0.15 2.94 5.80 -4.04 -0.02 2.91 16 11 C 0.17 2.97 2.43 -67.93 -0.17 2.81 16 12 H 0.09 1.78 7.33 -51.93 -0.38 1.40 16 13 N -0.70 -12.14 4.49 -55.15 -0.25 -12.39 16 14 C 0.59 10.58 7.11 -12.90 -0.09 10.49 16 15 O -0.54 -10.62 13.85 5.19 0.07 -10.55 16 16 C -0.26 -4.05 6.43 -36.98 -0.24 -4.28 16 17 C -0.06 -0.80 9.80 -40.33 -0.40 -1.20 16 18 C -0.12 -1.47 5.75 -104.87 -0.60 -2.08 16 19 C -0.20 -2.45 6.15 -34.88 -0.21 -2.66 16 20 S 0.21 2.90 22.09 -107.50 -2.37 0.53 16 21 C -0.05 -0.45 6.22 -27.33 -0.17 -0.62 16 22 C -0.11 -0.86 5.93 -26.61 -0.16 -1.01 16 23 C -0.12 -0.95 5.89 -26.67 -0.16 -1.11 16 24 C -0.05 -0.50 6.13 -27.09 -0.17 -0.67 16 25 C -0.16 -2.41 5.36 -90.62 -0.49 -2.90 16 26 C -0.17 -2.30 10.18 -26.69 -0.27 -2.57 16 27 C -0.19 -2.66 9.73 -26.70 -0.26 -2.92 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.39 10.38 7.33 -40.82 -0.30 10.08 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.40 6.77 7.71 -40.82 -0.31 6.46 16 33 H 0.15 2.01 8.05 -52.49 -0.42 1.59 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.41 8.11 -51.93 -0.42 0.99 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 45 H 0.12 1.95 5.02 -51.92 -0.26 1.69 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -31.54 383.58 -12.17 -43.71 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.13 Total: 14.76 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.65 Total: -13.09 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.15 Total: -58.37 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.37 Total: 0.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.54 -12.17 -43.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483603696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.622 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds