Wall clock time and date at job start Tue Mar 31 2020 18:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99672 * 2 1 4 4 H 1.48497 * 109.47292 * 239.99676 * 3 2 1 5 5 H 1.48502 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47016 * 120.00080 * 3 2 1 7 7 C 1.38801 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00019 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47589 * 295.00690 * 11 10 9 13 13 N 1.46500 * 109.47003 * 55.00255 * 11 10 9 14 14 C 1.34773 * 120.00509 * 204.99732 * 13 11 10 15 15 O 1.21704 * 119.99823 * 0.02562 * 14 13 11 16 16 C 1.46586 * 120.00540 * 179.97438 * 14 13 11 17 17 C 1.36118 * 125.45687 * 179.97438 * 16 14 13 18 18 C 1.38278 * 114.09716 * 179.97438 * 17 16 14 19 19 C 1.35235 * 113.92611 * 0.02562 * 18 17 16 20 20 S 1.70755 * 111.11221 * 359.76458 * 19 18 17 21 21 C 1.51720 * 124.32976 * 179.97438 * 19 18 17 22 22 C 1.53089 * 108.75638 * 343.44972 * 21 19 18 23 23 C 1.53146 * 108.99344 * 50.07649 * 22 21 19 24 24 C 1.52329 * 123.07439 * 179.97438 * 18 17 16 25 25 C 1.52996 * 109.47215 * 175.00179 * 11 10 9 26 26 C 1.53002 * 117.49888 * 111.25646 * 25 11 10 27 27 C 1.53000 * 117.50107 * 179.91408 * 25 11 10 28 28 H 0.97001 * 120.00226 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99631 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46694 * 60.00472 * 10 9 7 31 31 H 1.08996 * 109.47259 * 300.00462 * 10 9 7 32 32 H 0.97006 * 119.99923 * 24.99965 * 13 11 10 33 33 H 1.07995 * 122.94917 * 359.93162 * 17 16 14 34 34 H 1.09006 * 109.58499 * 223.66380 * 21 19 18 35 35 H 1.09002 * 109.58838 * 103.22958 * 21 19 18 36 36 H 1.09002 * 109.54783 * 290.22399 * 22 21 19 37 37 H 1.08999 * 109.55185 * 169.93633 * 22 21 19 38 38 H 1.09004 * 109.50969 * 169.23080 * 23 22 21 39 39 H 1.09005 * 109.51092 * 49.07866 * 23 22 21 40 40 H 1.09004 * 109.57690 * 282.46348 * 24 18 17 41 41 H 1.09002 * 109.58267 * 42.86561 * 24 18 17 42 42 H 1.09002 * 115.54951 * 325.58620 * 25 11 10 43 43 H 1.09000 * 117.49996 * 215.00804 * 26 25 11 44 44 H 1.08999 * 117.49664 * 0.02562 * 26 25 11 45 45 H 1.09008 * 117.49673 * 359.97438 * 27 25 11 46 46 H 1.08999 * 117.49959 * 144.99502 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4973 -4.8139 0.9309 13 7 0.1449 -4.6758 -1.1319 14 6 -1.0795 -5.2367 -1.0813 15 8 -1.4220 -5.8623 -0.0952 16 6 -1.9993 -5.0923 -2.2136 17 6 -3.2560 -5.6108 -2.2811 18 6 -3.9198 -5.3303 -3.4612 19 6 -3.1981 -4.5915 -4.3342 20 16 -1.6585 -4.2174 -3.6976 21 6 -3.6960 -4.1501 -5.6977 22 6 -4.9153 -4.9959 -6.0740 23 6 -5.9077 -4.9862 -4.9077 24 6 -5.3356 -5.8106 -3.7530 25 6 1.8248 -6.1411 -0.1258 26 6 1.8338 -7.0695 1.0903 27 6 1.0023 -7.4311 -0.1430 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 2.6847 -3.7144 0.8906 31 1 2.6849 -3.7145 -0.8894 32 1 0.4177 -4.1769 -1.9178 33 1 -3.6957 -6.1909 -1.4833 34 1 -2.9089 -4.2937 -6.4381 35 1 -3.9784 -3.0980 -5.6607 36 1 -4.6005 -6.0196 -6.2767 37 1 -5.3904 -4.5766 -6.9609 38 1 -6.8538 -5.4203 -5.2311 39 1 -6.0710 -3.9604 -4.5772 40 1 -5.3137 -6.8642 -4.0317 41 1 -5.9564 -5.6779 -2.8669 42 1 2.7239 -6.1092 -0.7413 43 1 2.7387 -7.6484 1.2749 44 1 1.2973 -6.7391 1.9797 45 1 -0.0810 -7.3384 -0.0643 46 1 1.3602 -8.2478 -0.7698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483603696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:29 Heat of formation + Delta-G solvation = -3.730441 kcal Electronic energy + Delta-G solvation = -26312.035463 eV Core-core repulsion = 22713.598747 eV Total energy + Delta-G solvation = -3598.436716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21058 -40.07144 -38.44925 -36.64790 -35.87668 -35.05287 -33.07067 -31.82882 -30.63229 -29.32466 -26.13308 -25.25517 -24.66019 -23.34429 -23.09617 -22.56198 -21.39621 -21.26484 -19.65448 -19.08518 -18.82004 -17.43262 -17.14416 -16.73144 -16.62984 -15.96360 -15.94590 -15.57583 -15.26172 -15.20849 -14.95158 -14.72700 -14.51624 -14.00432 -13.83829 -13.72277 -13.59495 -13.44514 -13.20490 -12.77359 -12.75050 -12.54012 -12.44553 -12.23966 -12.14007 -12.11486 -11.86033 -11.72389 -11.51762 -11.36209 -11.29159 -11.16329 -11.00483 -10.91382 -10.09583 -9.61676 -9.30988 -9.03809 -7.94303 -5.25252 -0.49259 0.46419 0.93700 1.31154 1.47861 1.50829 1.56915 2.02453 2.15106 2.55488 2.98888 3.39559 3.53512 3.64057 3.73173 3.90920 3.97528 4.03254 4.09024 4.14214 4.14683 4.26647 4.30479 4.41402 4.44063 4.59582 4.62499 4.68413 4.79097 4.80701 4.85219 4.86908 4.99135 5.02186 5.04536 5.07631 5.15196 5.23361 5.26898 5.32243 5.39538 5.46874 5.47628 5.51018 5.53880 6.25033 6.42517 7.09165 7.32371 8.03965 8.28790 9.28489 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.003843 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.381990 B = 7284.715292 C = 9634.702827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.178 3.822 12 H 0.061 0.939 13 N -0.701 5.701 14 C 0.591 3.409 15 O -0.566 6.566 16 C -0.294 4.294 17 C -0.054 4.054 18 C -0.131 4.131 19 C -0.192 4.192 20 S 0.208 5.792 21 C -0.054 4.054 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.054 4.054 25 C -0.167 4.167 26 C -0.159 4.159 27 C -0.184 4.184 28 H 0.250 0.750 29 H 0.373 0.627 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.402 0.598 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 -15.053 -13.652 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.803 3.197 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.387 5.387 10 C 0.023 3.977 11 C 0.074 3.926 12 H 0.079 0.921 13 N -0.350 5.350 14 C 0.379 3.621 15 O -0.449 6.449 16 C -0.414 4.414 17 C -0.088 4.088 18 C -0.143 4.143 19 C -0.312 4.312 20 S 0.479 5.521 21 C -0.093 4.093 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.093 4.093 25 C -0.187 4.187 26 C -0.196 4.196 27 C -0.221 4.221 28 H 0.059 0.941 29 H 0.205 0.795 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.238 0.762 33 H 0.164 0.836 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.091 -14.525 -13.473 20.727 hybrid contribution -0.965 0.632 0.788 1.397 sum -7.056 -13.893 -12.685 20.092 Atomic orbital electron populations 1.69839 1.06728 1.26103 1.59185 1.25563 0.96272 1.01096 1.03420 0.85208 0.77150 0.79079 0.78257 1.20006 1.22413 1.20566 1.19601 0.91616 0.85007 1.41671 0.90183 1.42525 1.05583 1.00980 1.89629 1.21054 0.93267 0.83743 0.99631 1.20646 0.89489 0.93830 0.88663 0.92053 1.45801 1.14333 1.54134 1.20689 1.17164 0.81115 0.78239 0.85571 1.90692 1.76755 1.43629 1.33791 1.24231 1.01501 1.14154 1.01559 1.20744 0.91753 0.97897 0.98388 1.19747 0.99549 1.02282 0.92720 1.25123 0.98731 1.04271 1.03059 1.83107 1.13624 1.48852 1.06522 1.20595 0.99156 1.00741 0.88789 1.21570 0.94325 1.00354 0.98637 1.21581 0.99165 1.00259 0.94724 1.20627 0.88739 1.00270 0.99693 1.22569 1.01851 0.89888 1.04370 1.22986 1.02655 1.02232 0.91771 1.23203 0.99360 0.97704 1.01861 0.94087 0.79540 0.94033 0.94145 0.76244 0.83626 0.89035 0.89485 0.91124 0.89036 0.89236 0.92329 0.89386 0.90340 0.85889 0.86295 0.89936 0.89072 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.74 -37.89 5.43 -343.46 -1.87 -39.76 16 10 C 0.15 5.95 5.80 86.38 0.50 6.45 16 11 C 0.18 6.40 2.43 44.99 0.11 6.51 16 12 H 0.06 2.55 7.33 -2.39 -0.02 2.54 16 13 N -0.70 -25.19 4.49 -446.60 -2.01 -27.20 16 14 C 0.59 22.18 7.11 86.42 0.61 22.79 16 15 O -0.57 -23.78 13.85 -4.36 -0.06 -23.84 16 16 C -0.29 -9.65 6.43 23.96 0.15 -9.50 16 17 C -0.05 -1.57 9.80 21.79 0.21 -1.35 16 18 C -0.13 -3.12 5.75 -20.02 -0.12 -3.24 16 19 C -0.19 -4.45 6.15 25.32 0.16 -4.29 16 20 S 0.21 5.71 22.09 -56.49 -1.25 4.46 16 21 C -0.05 -0.87 6.22 30.20 0.19 -0.68 16 22 C -0.11 -1.32 5.93 30.67 0.18 -1.14 16 23 C -0.12 -1.58 5.89 30.64 0.18 -1.39 16 24 C -0.05 -0.91 6.13 30.36 0.19 -0.72 16 25 C -0.17 -4.80 5.36 -10.79 -0.06 -4.85 16 26 C -0.16 -4.12 10.18 30.62 0.31 -3.81 16 27 C -0.18 -5.18 9.73 30.62 0.30 -4.88 16 28 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.37 20.78 7.33 -92.71 -0.68 20.10 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.40 14.07 7.71 -92.70 -0.72 13.35 16 33 H 0.15 4.18 8.05 -2.91 -0.02 4.16 16 34 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 0.88 8.10 -2.38 -0.02 0.86 16 40 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.12 3.08 8.11 -2.39 -0.02 3.06 16 43 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.08 2.35 8.05 -2.39 -0.02 2.33 16 45 H 0.09 3.13 5.02 -2.38 -0.01 3.12 16 46 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -69.16 383.58 0.96 -68.19 By element: Atomic # 1 Polarization: 46.60 SS G_CDS: -0.39 Total: 46.21 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.23 Total: -16.56 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -3.59 Total: -126.37 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.06 Total: -23.84 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 5.71 SS G_CDS: -1.25 Total: 4.46 kcal Total: -69.16 0.96 -68.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483603696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.461 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds