Wall clock time and date at job start Tue Mar 31 2020 18:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99762 * 2 1 4 4 H 1.48501 * 109.46927 * 185.00804 * 3 2 1 5 5 H 1.48498 * 109.47440 * 305.00460 * 3 2 1 6 6 H 1.48502 * 109.47127 * 65.01056 * 3 2 1 7 7 C 1.38811 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00057 * 185.31698 * 7 2 1 9 9 N 1.36934 * 120.00082 * 5.31774 * 7 2 1 10 10 C 1.46508 * 120.00060 * 183.41778 * 9 7 2 11 11 C 1.52996 * 115.56161 * 322.03814 * 10 9 7 12 12 N 1.46496 * 109.47289 * 280.66341 * 11 10 9 13 13 C 1.34781 * 120.00426 * 185.09522 * 12 11 10 14 14 O 1.21282 * 119.99514 * 354.53326 * 13 12 11 15 15 C 1.50694 * 120.00119 * 174.53086 * 13 12 11 16 16 H 1.09000 * 109.69880 * 56.21183 * 15 13 12 17 17 C 1.53410 * 109.70356 * 295.64101 * 15 13 12 18 18 O 1.42816 * 108.38734 * 175.56181 * 17 15 13 19 19 C 1.35853 * 117.87299 * 49.09998 * 18 17 15 20 20 C 1.39113 * 118.47545 * 163.00467 * 19 18 17 21 21 C 1.38185 * 120.19960 * 179.76839 * 20 19 18 22 22 F 1.35099 * 120.04434 * 179.97438 * 21 20 19 23 23 C 1.38520 * 119.90591 * 0.04427 * 21 20 19 24 24 C 1.38064 * 119.95196 * 0.05714 * 23 21 20 25 25 C 1.38396 * 121.80873 * 342.94827 * 19 18 17 26 26 C 1.50800 * 121.40798 * 0.31108 * 25 19 18 27 27 C 1.52998 * 117.49741 * 176.35173 * 10 9 7 28 28 C 1.52999 * 117.49675 * 107.72596 * 10 9 7 29 29 H 0.97001 * 120.00345 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00161 * 3.41461 * 9 7 2 31 31 H 1.09002 * 109.46887 * 40.66312 * 11 10 9 32 32 H 1.08993 * 109.47152 * 160.65877 * 11 10 9 33 33 H 0.97001 * 120.00402 * 5.09637 * 12 11 10 34 34 H 1.09003 * 109.68112 * 295.28844 * 17 15 13 35 35 H 1.08998 * 109.68072 * 55.83517 * 17 15 13 36 36 H 1.08003 * 119.89726 * 359.80041 * 20 19 18 37 37 H 1.07995 * 120.02622 * 180.02562 * 23 21 20 38 38 H 1.08000 * 119.82351 * 179.97438 * 24 23 21 39 39 H 1.09009 * 109.46972 * 222.19615 * 26 25 19 40 40 H 1.08999 * 109.41240 * 102.31802 * 26 25 19 41 41 H 1.08995 * 117.49976 * 145.02328 * 27 10 9 42 42 H 1.08997 * 117.50032 * 359.97438 * 27 10 9 43 43 H 1.08999 * 117.50339 * 0.02562 * 28 10 9 44 44 H 1.09003 * 117.51989 * 214.96606 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7055 1.3491 -0.1222 5 1 1.8021 2.4480 -1.1468 6 1 1.9853 2.3421 1.2690 7 6 2.0102 -1.2021 -0.0005 8 1 3.0867 -1.2042 0.0861 9 7 1.3300 -2.3854 -0.1110 10 6 2.0545 -3.6566 -0.0363 11 6 3.4276 -3.6745 -0.7109 12 7 3.2591 -3.8326 -2.1575 13 6 4.3395 -3.9784 -2.9500 14 8 5.4535 -3.8797 -2.4806 15 6 4.1634 -4.2641 -4.4190 16 1 3.5477 -3.4876 -4.8731 17 6 3.4913 -5.6308 -4.6032 18 8 3.2439 -5.8272 -5.9960 19 6 4.2670 -5.6010 -6.8608 20 6 4.1726 -6.1170 -8.1493 21 6 5.1904 -5.9043 -9.0595 22 9 5.0957 -6.4072 -10.3098 23 6 6.3084 -5.1759 -8.6876 24 6 6.4043 -4.6651 -7.4085 25 6 5.3869 -4.8762 -6.4924 26 6 5.5315 -4.3045 -5.1045 27 6 1.2288 -4.9440 -0.0807 28 6 1.8786 -4.4966 1.2303 29 1 -0.4851 0.8400 0.0004 30 1 0.3684 -2.3820 -0.2386 31 1 3.9454 -2.7375 -0.5057 32 1 4.0135 -4.5064 -0.3202 33 1 2.3699 -3.8324 -2.5451 34 1 4.1498 -6.4166 -4.2329 35 1 2.5487 -5.6531 -4.0562 36 1 3.3010 -6.6850 -8.4392 37 1 7.1048 -5.0082 -9.3975 38 1 7.2771 -4.0979 -7.1207 39 1 5.9354 -3.2941 -5.1680 40 1 6.2098 -4.9298 -4.5239 41 1 1.6639 -5.8036 -0.5904 42 1 0.1466 -4.8451 -0.1650 43 1 1.2236 -4.1037 2.0079 44 1 2.7410 -5.0623 1.5833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483734230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:17 Heat of formation + Delta-G solvation = -59.999598 kcal Electronic energy + Delta-G solvation = -28139.653865 eV Core-core repulsion = 23972.563959 eV Total energy + Delta-G solvation = -4167.089906 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.19402 -41.21893 -39.49177 -37.72938 -37.51839 -34.35180 -33.90063 -33.16273 -30.85770 -30.72600 -29.82759 -26.90014 -25.93688 -24.28687 -23.98083 -23.20917 -21.96403 -21.07764 -19.90191 -19.14203 -18.64093 -17.68754 -17.25041 -17.10633 -16.32559 -16.00681 -15.92736 -15.47565 -15.33810 -15.30562 -14.94430 -14.65126 -14.23684 -13.99991 -13.86571 -13.72825 -13.41978 -13.26253 -13.18964 -12.98026 -12.20688 -12.01055 -11.98823 -11.76173 -11.48069 -11.16714 -11.14967 -11.03413 -10.95681 -10.91887 -10.53674 -10.29161 -9.81954 -9.74380 -9.63187 -9.08617 -8.87321 -8.70184 -8.52691 -7.09495 -5.93292 -3.23058 0.78154 0.93827 2.63137 2.78683 3.18518 3.29364 3.35136 3.42532 3.43924 4.04377 4.23834 4.30957 4.34426 4.42530 4.51312 4.58638 4.68272 4.78247 4.87179 5.04562 5.10892 5.16555 5.21705 5.22825 5.28949 5.40051 5.52409 5.60442 5.67000 5.71985 5.73997 5.81456 5.86507 6.03817 6.07018 6.12404 6.37343 6.37858 6.47398 6.51059 6.66830 6.73275 7.00795 7.60810 7.70652 8.23820 8.33559 9.35863 9.87599 10.22607 11.28165 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.002590 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.563292 B =10807.146761 C =11555.155668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.684 5.684 10 C 0.141 3.859 11 C 0.153 3.847 12 N -0.706 5.706 13 C 0.519 3.481 14 O -0.542 6.542 15 C -0.149 4.149 16 H 0.113 0.887 17 C 0.074 3.926 18 O -0.305 6.305 19 C 0.159 3.841 20 C -0.185 4.185 21 C 0.127 3.873 22 F -0.136 7.136 23 C -0.184 4.184 24 C -0.054 4.054 25 C -0.163 4.163 26 C -0.059 4.059 27 C -0.196 4.196 28 C -0.208 4.208 29 H 0.257 0.743 30 H 0.389 0.611 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.404 0.596 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.848 -13.951 -14.077 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.046 3.954 11 C 0.029 3.971 12 N -0.356 5.356 13 C 0.304 3.696 14 O -0.420 6.420 15 C -0.171 4.171 16 H 0.131 0.869 17 C -0.001 4.001 18 O -0.218 6.218 19 C 0.113 3.887 20 C -0.205 4.205 21 C 0.108 3.892 22 F -0.115 7.115 23 C -0.203 4.203 24 C -0.072 4.072 25 C -0.164 4.164 26 C -0.096 4.096 27 C -0.235 4.235 28 C -0.251 4.251 29 H 0.067 0.933 30 H 0.224 0.776 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.238 0.762 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.534 -13.761 -13.788 21.688 hybrid contribution -0.397 1.002 -0.182 1.093 sum 9.137 -12.758 -13.970 21.010 Atomic orbital electron populations 1.69685 1.05169 1.25941 1.56710 1.24761 0.95490 0.97868 1.02237 0.86131 0.79007 0.83840 0.77308 1.20337 1.21689 1.21701 1.19226 0.91551 0.83574 1.43231 0.90630 1.41900 1.06889 0.98544 1.84788 1.20124 0.92053 0.85176 0.98073 1.21060 0.95796 1.02078 0.78179 1.45915 1.09070 1.72318 1.08305 1.20006 0.84944 0.77327 0.87340 1.90698 1.24556 1.50983 1.75713 1.22019 1.00038 1.00126 0.94886 0.86853 1.22997 1.02698 0.95207 0.79197 1.86038 1.34666 1.83992 1.17102 1.18315 0.87344 0.93454 0.89546 1.20403 1.01244 1.06512 0.92307 1.17237 0.95328 0.96903 0.79738 1.91511 1.96372 1.85405 1.38213 1.21015 0.98580 1.02563 0.98173 1.20765 0.97792 0.97116 0.91495 1.19979 0.95681 1.02713 0.98021 1.20324 0.95876 1.02977 0.90429 1.23141 0.99413 0.98420 1.02528 1.23573 1.02853 1.05950 0.92703 0.93330 0.77577 0.90037 0.91795 0.76152 0.90720 0.86385 0.83890 0.84524 0.84444 0.89000 0.88768 0.89523 0.89206 0.88956 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.62 13.08 55.49 0.73 -25.90 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.70 29.56 -169.99 -5.02 16.68 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.33 9.52 -15.06 -0.14 -6.48 16 8 H 0.08 1.94 6.21 -52.49 -0.33 1.61 16 9 N -0.68 -15.59 5.62 -47.23 -0.27 -15.86 16 10 C 0.14 2.52 2.45 -131.82 -0.32 2.19 16 11 C 0.15 2.58 5.47 -4.05 -0.02 2.56 16 12 N -0.71 -10.17 5.43 -60.30 -0.33 -10.50 16 13 C 0.52 7.31 7.12 -10.99 -0.08 7.24 16 14 O -0.54 -9.45 15.77 5.56 0.09 -9.36 16 15 C -0.15 -1.62 2.75 -91.52 -0.25 -1.87 16 16 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 17 C 0.07 0.70 6.29 37.37 0.23 0.93 16 18 O -0.30 -3.27 10.27 -19.28 -0.20 -3.47 16 19 C 0.16 1.71 6.47 -39.20 -0.25 1.45 16 20 C -0.19 -1.88 9.91 -39.28 -0.39 -2.27 16 21 C 0.13 1.26 7.30 -39.50 -0.29 0.97 16 22 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 23 C -0.18 -1.59 10.03 -39.54 -0.40 -1.99 16 24 C -0.05 -0.46 9.66 -39.54 -0.38 -0.85 16 25 C -0.16 -1.64 5.75 -104.41 -0.60 -2.24 16 26 C -0.06 -0.61 4.70 -27.80 -0.13 -0.74 16 27 C -0.20 -2.89 10.12 -26.73 -0.27 -3.16 16 28 C -0.21 -3.41 10.10 -26.73 -0.27 -3.68 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.39 9.52 8.00 -40.82 -0.33 9.19 16 31 H 0.08 1.62 6.26 -51.93 -0.33 1.30 16 32 H 0.06 1.00 7.96 -51.93 -0.41 0.59 16 33 H 0.40 5.32 8.38 -40.82 -0.34 4.98 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.12 0.93 7.98 -51.93 -0.41 0.51 16 36 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 40 H 0.09 1.03 7.64 -51.93 -0.40 0.63 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 44 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -30.22 373.29 -8.90 -39.12 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.90 Total: 13.25 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -3.66 Total: -8.22 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.13 Total: -52.26 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.11 Total: -12.83 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.22 -8.90 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483734230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.878 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds