Wall clock time and date at job start Tue Mar 31 2020 18:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99762 * 2 1 4 4 H 1.48501 * 109.46927 * 185.00804 * 3 2 1 5 5 H 1.48498 * 109.47440 * 305.00460 * 3 2 1 6 6 H 1.48502 * 109.47127 * 65.01056 * 3 2 1 7 7 C 1.38811 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00057 * 185.31698 * 7 2 1 9 9 N 1.36934 * 120.00082 * 5.31774 * 7 2 1 10 10 C 1.46508 * 120.00060 * 183.41778 * 9 7 2 11 11 C 1.52996 * 115.56161 * 322.03814 * 10 9 7 12 12 N 1.46496 * 109.47289 * 280.66341 * 11 10 9 13 13 C 1.34781 * 120.00426 * 185.09522 * 12 11 10 14 14 O 1.21282 * 119.99514 * 354.53326 * 13 12 11 15 15 C 1.50694 * 120.00119 * 174.53086 * 13 12 11 16 16 H 1.09000 * 109.69880 * 56.21183 * 15 13 12 17 17 C 1.53410 * 109.70356 * 295.64101 * 15 13 12 18 18 O 1.42816 * 108.38734 * 175.56181 * 17 15 13 19 19 C 1.35853 * 117.87299 * 49.09998 * 18 17 15 20 20 C 1.39113 * 118.47545 * 163.00467 * 19 18 17 21 21 C 1.38185 * 120.19960 * 179.76839 * 20 19 18 22 22 F 1.35099 * 120.04434 * 179.97438 * 21 20 19 23 23 C 1.38520 * 119.90591 * 0.04427 * 21 20 19 24 24 C 1.38064 * 119.95196 * 0.05714 * 23 21 20 25 25 C 1.38396 * 121.80873 * 342.94827 * 19 18 17 26 26 C 1.50800 * 121.40798 * 0.31108 * 25 19 18 27 27 C 1.52998 * 117.49741 * 176.35173 * 10 9 7 28 28 C 1.52999 * 117.49675 * 107.72596 * 10 9 7 29 29 H 0.97001 * 120.00345 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00161 * 3.41461 * 9 7 2 31 31 H 1.09002 * 109.46887 * 40.66312 * 11 10 9 32 32 H 1.08993 * 109.47152 * 160.65877 * 11 10 9 33 33 H 0.97001 * 120.00402 * 5.09637 * 12 11 10 34 34 H 1.09003 * 109.68112 * 295.28844 * 17 15 13 35 35 H 1.08998 * 109.68072 * 55.83517 * 17 15 13 36 36 H 1.08003 * 119.89726 * 359.80041 * 20 19 18 37 37 H 1.07995 * 120.02622 * 180.02562 * 23 21 20 38 38 H 1.08000 * 119.82351 * 179.97438 * 24 23 21 39 39 H 1.09009 * 109.46972 * 222.19615 * 26 25 19 40 40 H 1.08999 * 109.41240 * 102.31802 * 26 25 19 41 41 H 1.08995 * 117.49976 * 145.02328 * 27 10 9 42 42 H 1.08997 * 117.50032 * 359.97438 * 27 10 9 43 43 H 1.08999 * 117.50339 * 0.02562 * 28 10 9 44 44 H 1.09003 * 117.51989 * 214.96606 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7055 1.3491 -0.1222 5 1 1.8021 2.4480 -1.1468 6 1 1.9853 2.3421 1.2690 7 6 2.0102 -1.2021 -0.0005 8 1 3.0867 -1.2042 0.0861 9 7 1.3300 -2.3854 -0.1110 10 6 2.0545 -3.6566 -0.0363 11 6 3.4276 -3.6745 -0.7109 12 7 3.2591 -3.8326 -2.1575 13 6 4.3395 -3.9784 -2.9500 14 8 5.4535 -3.8797 -2.4806 15 6 4.1634 -4.2641 -4.4190 16 1 3.5477 -3.4876 -4.8731 17 6 3.4913 -5.6308 -4.6032 18 8 3.2439 -5.8272 -5.9960 19 6 4.2670 -5.6010 -6.8608 20 6 4.1726 -6.1170 -8.1493 21 6 5.1904 -5.9043 -9.0595 22 9 5.0957 -6.4072 -10.3098 23 6 6.3084 -5.1759 -8.6876 24 6 6.4043 -4.6651 -7.4085 25 6 5.3869 -4.8762 -6.4924 26 6 5.5315 -4.3045 -5.1045 27 6 1.2288 -4.9440 -0.0807 28 6 1.8786 -4.4966 1.2303 29 1 -0.4851 0.8400 0.0004 30 1 0.3684 -2.3820 -0.2386 31 1 3.9454 -2.7375 -0.5057 32 1 4.0135 -4.5064 -0.3202 33 1 2.3699 -3.8324 -2.5451 34 1 4.1498 -6.4166 -4.2329 35 1 2.5487 -5.6531 -4.0562 36 1 3.3010 -6.6850 -8.4392 37 1 7.1048 -5.0082 -9.3975 38 1 7.2771 -4.0979 -7.1207 39 1 5.9354 -3.2941 -5.1680 40 1 6.2098 -4.9298 -4.5239 41 1 1.6639 -5.8036 -0.5904 42 1 0.1466 -4.8451 -0.1650 43 1 1.2236 -4.1037 2.0079 44 1 2.7410 -5.0623 1.5833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483734230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:17 Heat of formation + Delta-G solvation = -78.682500 kcal Electronic energy + Delta-G solvation = -28140.464016 eV Core-core repulsion = 23972.563959 eV Total energy + Delta-G solvation = -4167.900057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.95927 -42.05355 -40.61633 -39.03050 -38.35433 -35.29913 -35.23264 -34.88520 -31.73077 -31.59872 -31.47905 -28.12324 -26.70654 -25.95297 -25.18531 -23.95232 -23.21242 -22.02142 -21.04537 -20.43057 -19.40210 -19.25898 -18.58221 -17.95926 -17.34437 -17.12511 -16.76950 -16.57146 -16.39632 -16.12822 -16.02795 -15.87832 -15.61504 -15.34560 -14.85817 -14.70890 -14.60454 -14.39761 -14.16904 -13.95012 -13.54598 -13.53586 -13.03941 -12.82672 -12.74209 -12.56020 -12.30522 -12.29354 -12.18217 -12.09012 -11.91546 -11.71500 -11.67252 -11.09039 -11.00630 -10.60758 -10.00941 -9.81357 -9.27770 -8.93915 -7.98552 -5.25442 0.03836 0.22183 1.43753 1.46292 1.52944 1.54442 1.96737 2.16608 2.50391 2.51338 3.10162 3.31642 3.40580 3.43055 3.50383 3.59736 3.66203 3.76339 3.83843 3.92697 4.01296 4.11900 4.14857 4.28963 4.36075 4.41524 4.44989 4.50329 4.77499 4.85226 4.86314 4.90931 4.97344 5.01213 5.02211 5.03755 5.15698 5.16105 5.35171 5.39300 5.47601 5.56548 5.66668 6.24020 6.25203 6.55973 7.19484 7.31075 8.03301 8.26283 9.23952 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.002590 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.563292 B =10807.146761 C =11555.155668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.229 4.229 8 H 0.074 0.926 9 N -0.696 5.696 10 C 0.112 3.888 11 C 0.164 3.836 12 N -0.702 5.702 13 C 0.523 3.477 14 O -0.576 6.576 15 C -0.140 4.140 16 H 0.117 0.883 17 C 0.077 3.923 18 O -0.312 6.312 19 C 0.144 3.856 20 C -0.193 4.193 21 C 0.116 3.884 22 F -0.141 7.141 23 C -0.180 4.180 24 C -0.053 4.053 25 C -0.168 4.168 26 C -0.055 4.055 27 C -0.162 4.162 28 C -0.206 4.206 29 H 0.251 0.749 30 H 0.378 0.622 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 -15.414 -14.929 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.360 4.360 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.019 3.981 11 C 0.039 3.961 12 N -0.352 5.352 13 C 0.309 3.691 14 O -0.456 6.456 15 C -0.162 4.162 16 H 0.135 0.865 17 C 0.002 3.998 18 O -0.226 6.226 19 C 0.098 3.902 20 C -0.213 4.213 21 C 0.097 3.903 22 F -0.120 7.120 23 C -0.198 4.198 24 C -0.070 4.070 25 C -0.169 4.169 26 C -0.092 4.092 27 C -0.200 4.200 28 C -0.248 4.248 29 H 0.060 0.940 30 H 0.212 0.788 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.247 0.753 34 H 0.099 0.901 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.577 -15.276 -14.647 23.659 hybrid contribution -0.647 1.346 0.086 1.496 sum 9.930 -13.930 -14.560 22.465 Atomic orbital electron populations 1.69802 1.06294 1.25930 1.59368 1.25391 0.96181 1.00555 1.03876 0.85266 0.78203 0.80772 0.76691 1.19682 1.22077 1.22158 1.19454 0.91544 0.84787 1.40258 0.90845 1.41943 1.06497 0.99606 1.85267 1.20369 0.93084 0.84552 1.00073 1.20812 0.94846 1.00874 0.79598 1.45868 1.09677 1.72166 1.07489 1.20472 0.84114 0.76102 0.88385 1.90685 1.25839 1.52448 1.76620 1.21956 1.00688 1.01308 0.92240 0.86494 1.23092 1.03616 0.94199 0.78941 1.86030 1.34900 1.84136 1.17501 1.18457 0.87703 0.94173 0.89820 1.20525 1.01684 1.06711 0.92343 1.17419 0.95865 0.97405 0.79594 1.91499 1.96437 1.85553 1.38480 1.21282 0.98568 1.01463 0.98536 1.21037 0.98055 0.96783 0.91168 1.20020 0.96036 1.02902 0.97982 1.20268 0.95443 1.02869 0.90661 1.23212 0.99186 0.96973 1.00606 1.23554 1.03578 1.05282 0.92352 0.94022 0.78832 0.93656 0.90150 0.75290 0.90054 0.84647 0.83384 0.82359 0.82270 0.89114 0.89292 0.86125 0.89229 0.90764 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.38 13.08 21.65 0.28 -56.09 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 3 Si 0.96 45.29 29.56 68.60 2.03 47.32 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.23 -11.89 9.52 84.03 0.80 -11.09 16 8 H 0.07 3.80 6.21 -2.91 -0.02 3.78 16 9 N -0.70 -31.71 5.62 -303.35 -1.70 -33.42 16 10 C 0.11 3.84 2.45 3.60 0.01 3.85 16 11 C 0.16 5.31 5.47 86.38 0.47 5.78 16 12 N -0.70 -19.14 5.43 -463.08 -2.51 -21.65 16 13 C 0.52 14.05 7.12 87.65 0.62 14.67 16 14 O -0.58 -19.63 15.77 -3.03 -0.05 -19.68 16 15 C -0.14 -2.83 2.75 -11.38 -0.03 -2.86 16 16 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 17 C 0.08 1.28 6.29 72.12 0.45 1.73 16 18 O -0.31 -6.20 10.27 -91.89 -0.94 -7.14 16 19 C 0.14 2.89 6.47 22.52 0.15 3.04 16 20 C -0.19 -3.71 9.91 22.47 0.22 -3.49 16 21 C 0.12 2.14 7.30 22.32 0.16 2.31 16 22 F -0.14 -2.75 17.27 44.97 0.78 -1.97 16 23 C -0.18 -2.72 10.03 22.30 0.22 -2.50 16 24 C -0.05 -0.80 9.66 22.30 0.22 -0.58 16 25 C -0.17 -3.11 5.75 -19.73 -0.11 -3.23 16 26 C -0.06 -1.08 4.70 29.90 0.14 -0.94 16 27 C -0.16 -4.27 10.12 30.60 0.31 -3.96 16 28 C -0.21 -6.30 10.10 30.60 0.31 -5.99 16 29 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.38 18.66 8.00 -92.71 -0.74 17.92 16 31 H 0.05 1.80 6.26 -2.39 -0.01 1.79 16 32 H 0.08 2.34 7.96 -2.39 -0.02 2.32 16 33 H 0.41 10.08 8.38 -92.71 -0.78 9.30 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.14 1.75 7.98 -2.39 -0.02 1.73 16 36 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.09 1.84 7.64 -2.39 -0.02 1.82 16 41 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.10 2.72 8.09 -2.39 -0.02 2.70 16 Total: -1.00 -65.60 373.29 1.82 -63.78 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.46 Total: 35.36 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.41 Total: -6.50 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -3.94 Total: -111.16 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.99 Total: -26.82 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -65.60 1.82 -63.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483734230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.905 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds