Wall clock time and date at job start Tue Mar 31 2020 17:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.36007 * 117.00295 * 2 1 4 4 C 1.40506 * 119.89923 * 0.02610 * 3 2 1 5 5 C 1.36394 * 119.38410 * 179.97438 * 4 3 2 6 6 C 1.40088 * 119.34190 * 359.73375 * 5 4 3 7 7 C 1.40963 * 132.78140 * 179.55239 * 6 5 4 8 8 C 1.46549 * 126.58426 * 0.72699 * 7 6 5 9 9 O 1.21725 * 119.99506 * 359.72216 * 8 7 6 10 10 N 1.34770 * 120.00296 * 179.71657 * 8 7 6 11 11 C 1.46500 * 120.00423 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47361 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47294 * 64.99703 * 12 11 10 14 14 C 1.53006 * 109.47104 * 185.00342 * 12 11 10 15 15 O 1.42900 * 109.47466 * 54.99437 * 14 12 11 16 16 N 1.46505 * 109.47024 * 304.99744 * 12 11 10 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 12 11 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 12 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 12 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.40506 * 106.83607 * 180.46991 * 7 6 5 26 26 N 1.30778 * 108.73468 * 0.26376 * 25 7 6 27 27 N 1.36496 * 120.31933 * 0.54351 * 6 5 4 28 28 C 1.35639 * 119.90138 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47299 * 299.99922 * 1 2 3 30 30 H 1.08999 * 109.47706 * 59.99651 * 1 2 3 31 31 H 1.08995 * 109.47758 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.31026 * 359.97376 * 4 3 2 33 33 H 1.07997 * 120.32753 * 179.97438 * 5 4 3 34 34 H 0.96998 * 119.99979 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.46957 * 59.99705 * 11 10 8 36 36 H 1.09002 * 109.46680 * 300.00186 * 11 10 8 37 37 H 1.08997 * 109.47191 * 175.00471 * 14 12 11 38 38 H 1.09004 * 109.46584 * 294.99655 * 14 12 11 39 39 H 0.96700 * 113.99900 * 180.02562 * 15 14 12 40 40 H 0.97000 * 119.99792 * 334.99921 * 16 12 11 41 41 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 42 42 H 1.08003 * 125.63416 * 180.23879 * 25 7 6 43 43 H 1.08000 * 119.68298 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2791 2.3889 0.0006 5 6 1.9093 3.5985 0.0011 6 6 3.3095 3.6431 0.0067 7 6 4.2335 4.7076 0.0006 8 6 3.9174 6.1386 0.0006 9 8 2.7568 6.5054 0.0011 10 7 4.9117 7.0484 0.0001 11 6 4.5958 8.4789 0.0006 12 6 5.8943 9.2880 -0.0008 13 1 6.4313 9.1117 -0.9327 14 6 5.5673 10.7774 0.1255 15 8 4.7635 10.9918 1.2875 16 7 6.7290 8.8738 1.1297 17 6 8.0868 9.0421 1.0760 18 1 8.5425 9.4806 0.2005 19 6 8.8772 8.6549 2.1495 20 7 8.3219 8.1210 3.2167 21 14 10.7288 8.8917 2.0795 22 1 11.0373 10.3342 1.9087 23 1 11.3387 8.4004 3.3411 24 1 11.2824 8.1280 0.9325 25 6 5.5159 4.1333 0.0006 26 7 5.3931 2.8313 0.0005 27 7 4.0357 2.4874 0.0005 28 6 3.4011 1.2804 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2004 2.3363 0.0006 33 1 1.3346 4.5128 0.0011 34 1 5.8366 6.7560 0.0001 35 1 4.0163 8.7226 0.8911 36 1 4.0150 8.7230 -0.8890 37 1 6.4928 11.3463 0.2138 38 1 5.0219 11.1059 -0.7592 39 1 4.5174 11.9159 1.4304 40 1 6.3197 8.4803 1.9162 41 1 8.8742 7.8501 3.9667 42 1 6.4489 4.6773 0.0003 43 1 3.9826 0.3703 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486042367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:18 Heat of formation + Delta-G solvation = 4.161637 kcal Electronic energy + Delta-G solvation = -28104.514145 eV Core-core repulsion = 23960.126440 eV Total energy + Delta-G solvation = -4144.387704 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.26663 -39.83965 -38.84373 -37.00906 -36.34576 -34.80553 -33.37443 -33.12359 -31.34786 -30.41158 -29.47130 -28.26184 -27.21085 -25.21036 -24.13207 -23.65523 -22.70859 -22.16132 -20.05987 -19.82208 -18.36432 -18.09365 -17.54295 -16.85263 -16.58976 -16.44443 -16.36792 -15.55506 -15.48589 -14.94988 -14.78925 -14.71199 -14.34618 -14.05566 -13.98990 -13.39862 -13.33139 -13.00895 -12.83809 -12.75400 -12.65730 -12.46873 -11.91597 -11.76293 -11.36908 -11.18895 -10.88618 -10.85507 -10.80900 -10.55427 -10.49881 -10.09981 -9.75682 -9.51375 -9.31854 -9.16126 -8.94844 -8.49638 -7.61248 -7.00716 -5.78314 -3.08717 0.38509 0.88338 1.77288 2.25108 2.99768 3.04011 3.41517 3.46546 3.48150 3.72072 3.85231 4.12723 4.24041 4.37272 4.55440 4.57047 4.71364 4.79275 4.90919 4.96711 5.04410 5.16507 5.30106 5.43676 5.51104 5.57279 5.62109 5.73268 5.81404 5.93423 5.98315 6.07331 6.10795 6.34330 6.44883 6.52116 6.56001 6.80995 6.83294 7.03712 7.39051 7.64758 8.11116 8.24260 8.38532 8.75354 9.50783 10.06559 10.43235 11.42987 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.002746 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.462014 B =10193.530278 C =11639.733185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.086 3.914 4 C -0.151 4.151 5 C -0.058 4.058 6 C 0.134 3.866 7 C -0.291 4.291 8 C 0.595 3.405 9 O -0.567 6.567 10 N -0.709 5.709 11 C 0.122 3.878 12 C 0.165 3.835 13 H 0.066 0.934 14 C 0.060 3.940 15 O -0.560 6.560 16 N -0.713 5.713 17 C -0.248 4.248 18 H 0.069 0.931 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.119 3.881 26 N -0.309 5.309 27 N -0.244 5.244 28 C 0.059 3.941 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.150 0.850 33 H 0.167 0.833 34 H 0.407 0.593 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.026 0.974 39 H 0.363 0.637 40 H 0.389 0.611 41 H 0.256 0.744 42 H 0.205 0.795 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.778 -11.893 -8.973 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.038 3.962 4 C -0.174 4.174 5 C -0.078 4.078 6 C 0.012 3.988 7 C -0.306 4.306 8 C 0.383 3.617 9 O -0.448 6.448 10 N -0.359 5.359 11 C -0.002 4.002 12 C 0.054 3.946 13 H 0.083 0.917 14 C -0.022 4.022 15 O -0.363 6.363 16 N -0.355 5.355 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.204 4.204 20 N -0.572 5.572 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.212 1.212 25 C -0.060 4.060 26 N -0.132 5.132 27 N -0.008 5.008 28 C -0.068 4.068 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.167 0.833 33 H 0.185 0.815 34 H 0.243 0.757 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.208 0.792 40 H 0.224 0.776 41 H 0.066 0.934 42 H 0.222 0.778 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.459 -13.547 -8.944 22.416 hybrid contribution 0.827 1.482 0.310 1.725 sum -14.631 -12.065 -8.634 20.837 Atomic orbital electron populations 1.23140 0.77397 1.04441 1.01727 1.86053 1.21902 1.24696 1.89480 1.17826 0.90684 0.85552 1.02121 1.21530 1.01338 0.91365 1.03193 1.20777 0.90787 0.99572 0.96666 1.19281 0.92494 0.86492 1.00559 1.19802 0.91459 0.93466 1.25922 1.16796 0.85092 0.83797 0.75988 1.90711 1.19700 1.81514 1.52881 1.45700 1.09712 1.06376 1.74103 1.21510 0.97755 0.78980 1.01959 1.20604 0.90374 0.90235 0.93426 0.91654 1.23035 0.93244 1.00001 0.85906 1.86577 1.72350 1.30266 1.47098 1.42371 1.03157 1.73355 1.16570 1.19165 0.82906 1.35070 1.00813 0.91268 1.24741 0.97810 1.01468 0.96385 1.69669 1.34404 1.46779 1.06339 0.86316 0.85686 0.77674 0.76716 1.21402 1.21762 1.21223 1.24260 0.98726 0.90618 0.92387 1.77697 0.88423 1.15696 1.31357 1.45657 1.06558 1.04284 1.44319 1.19950 0.90979 0.88018 1.07806 0.92248 0.92301 0.87729 0.83253 0.81534 0.75659 0.90615 0.92177 0.93380 0.95561 0.79229 0.77624 0.93384 0.77844 0.80613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.54 10.48 -19.76 -0.21 -2.75 16 3 C 0.09 0.84 6.63 -39.66 -0.26 0.58 16 4 C -0.15 -1.39 9.04 -39.39 -0.36 -1.74 16 5 C -0.06 -0.71 9.72 -39.55 -0.38 -1.10 16 6 C 0.13 2.01 6.76 -84.06 -0.57 1.44 16 7 C -0.29 -4.80 6.17 -104.66 -0.65 -5.44 16 8 C 0.60 10.79 7.78 -12.91 -0.10 10.69 16 9 O -0.57 -11.34 15.70 5.17 0.08 -11.26 16 10 N -0.71 -12.51 5.38 -61.66 -0.33 -12.84 16 11 C 0.12 2.20 5.12 -4.04 -0.02 2.18 16 12 C 0.16 3.12 2.84 -67.93 -0.19 2.93 16 13 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 14 C 0.06 1.03 6.86 37.16 0.25 1.28 16 15 O -0.56 -10.01 12.64 -35.23 -0.45 -10.46 16 16 N -0.71 -16.87 4.51 -53.42 -0.24 -17.11 16 17 C -0.25 -6.48 9.93 -15.06 -0.15 -6.62 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.23 13.06 55.49 0.72 -26.50 16 21 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.12 1.83 11.44 -17.15 -0.20 1.64 16 26 N -0.31 -4.86 12.58 30.75 0.39 -4.48 16 27 N -0.24 -3.50 3.86 -10.40 -0.04 -3.54 16 28 C 0.06 0.68 11.10 -16.46 -0.18 0.49 16 29 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 30 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.15 0.86 6.36 -52.49 -0.33 0.53 16 33 H 0.17 2.04 7.11 -52.49 -0.37 1.67 16 34 H 0.41 7.08 7.06 -40.82 -0.29 6.80 16 35 H 0.08 1.54 7.40 -51.93 -0.38 1.15 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.36 4.68 9.12 45.56 0.42 5.09 16 40 H 0.39 10.30 7.80 -40.82 -0.32 9.98 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.21 2.74 7.46 -52.48 -0.39 2.34 16 43 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -34.68 370.24 -5.98 -40.65 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -4.55 Total: 18.87 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -1.91 Total: 7.15 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: 0.50 Total: -64.47 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.57 Total: -24.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.68 -5.98 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486042367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.817 kcal (2) G-P(sol) polarization free energy of solvation -34.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds