Wall clock time and date at job start Tue Mar 31 2020 17:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.36007 * 117.00295 * 2 1 4 4 C 1.40506 * 119.89923 * 0.02610 * 3 2 1 5 5 C 1.36394 * 119.38410 * 179.97438 * 4 3 2 6 6 C 1.40088 * 119.34190 * 359.73375 * 5 4 3 7 7 C 1.40963 * 132.78140 * 179.55239 * 6 5 4 8 8 C 1.46549 * 126.58426 * 0.72699 * 7 6 5 9 9 O 1.21725 * 119.99506 * 359.72216 * 8 7 6 10 10 N 1.34770 * 120.00296 * 179.71657 * 8 7 6 11 11 C 1.46500 * 120.00423 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47361 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47294 * 64.99703 * 12 11 10 14 14 C 1.53006 * 109.47104 * 185.00342 * 12 11 10 15 15 O 1.42900 * 109.47466 * 54.99437 * 14 12 11 16 16 N 1.46505 * 109.47024 * 304.99744 * 12 11 10 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 12 11 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 12 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 12 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.40506 * 106.83607 * 180.46991 * 7 6 5 26 26 N 1.30778 * 108.73468 * 0.26376 * 25 7 6 27 27 N 1.36496 * 120.31933 * 0.54351 * 6 5 4 28 28 C 1.35639 * 119.90138 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47299 * 299.99922 * 1 2 3 30 30 H 1.08999 * 109.47706 * 59.99651 * 1 2 3 31 31 H 1.08995 * 109.47758 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.31026 * 359.97376 * 4 3 2 33 33 H 1.07997 * 120.32753 * 179.97438 * 5 4 3 34 34 H 0.96998 * 119.99979 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.46957 * 59.99705 * 11 10 8 36 36 H 1.09002 * 109.46680 * 300.00186 * 11 10 8 37 37 H 1.08997 * 109.47191 * 175.00471 * 14 12 11 38 38 H 1.09004 * 109.46584 * 294.99655 * 14 12 11 39 39 H 0.96700 * 113.99900 * 180.02562 * 15 14 12 40 40 H 0.97000 * 119.99792 * 334.99921 * 16 12 11 41 41 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 42 42 H 1.08003 * 125.63416 * 180.23879 * 25 7 6 43 43 H 1.08000 * 119.68298 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2791 2.3889 0.0006 5 6 1.9093 3.5985 0.0011 6 6 3.3095 3.6431 0.0067 7 6 4.2335 4.7076 0.0006 8 6 3.9174 6.1386 0.0006 9 8 2.7568 6.5054 0.0011 10 7 4.9117 7.0484 0.0001 11 6 4.5958 8.4789 0.0006 12 6 5.8943 9.2880 -0.0008 13 1 6.4313 9.1117 -0.9327 14 6 5.5673 10.7774 0.1255 15 8 4.7635 10.9918 1.2875 16 7 6.7290 8.8738 1.1297 17 6 8.0868 9.0421 1.0760 18 1 8.5425 9.4806 0.2005 19 6 8.8772 8.6549 2.1495 20 7 8.3219 8.1210 3.2167 21 14 10.7288 8.8917 2.0795 22 1 11.0373 10.3342 1.9087 23 1 11.3387 8.4004 3.3411 24 1 11.2824 8.1280 0.9325 25 6 5.5159 4.1333 0.0006 26 7 5.3931 2.8313 0.0005 27 7 4.0357 2.4874 0.0005 28 6 3.4011 1.2804 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2004 2.3363 0.0006 33 1 1.3346 4.5128 0.0011 34 1 5.8366 6.7560 0.0001 35 1 4.0163 8.7226 0.8911 36 1 4.0150 8.7230 -0.8890 37 1 6.4928 11.3463 0.2138 38 1 5.0219 11.1059 -0.7592 39 1 4.5174 11.9159 1.4304 40 1 6.3197 8.4803 1.9162 41 1 8.8742 7.8501 3.9667 42 1 6.4489 4.6773 0.0003 43 1 3.9826 0.3703 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486042367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:17 Heat of formation + Delta-G solvation = -24.156692 kcal Electronic energy + Delta-G solvation = -28105.742120 eV Core-core repulsion = 23960.126440 eV Total energy + Delta-G solvation = -4145.615679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.30560 -40.69877 -40.13999 -38.49501 -37.26477 -36.32059 -35.08719 -34.13446 -33.08416 -31.36412 -30.65014 -29.74533 -27.93984 -26.49391 -25.58346 -25.05098 -23.88429 -23.20695 -21.56525 -21.12336 -19.46774 -19.16317 -18.97183 -18.12354 -17.92012 -17.47335 -17.25624 -16.97124 -16.45088 -16.32194 -15.94215 -15.87664 -15.62619 -15.40123 -15.15105 -14.98636 -14.78320 -14.39114 -14.25512 -13.72109 -13.60987 -13.50532 -13.13585 -12.97774 -12.70564 -12.60068 -12.44960 -12.25365 -11.98936 -11.92552 -11.84568 -11.69132 -11.56507 -11.01210 -10.83877 -10.67607 -10.11393 -9.91738 -8.96425 -8.65560 -7.86182 -5.15063 -0.55572 -0.08362 0.83453 1.03500 1.52045 1.53495 1.59496 2.03751 2.25611 2.46007 2.56387 2.60948 3.17314 3.32667 3.46365 3.49155 3.66224 3.83427 3.88505 3.95839 4.02515 4.11810 4.34428 4.38444 4.44377 4.45710 4.51070 4.61466 4.67107 4.78642 4.83284 4.91358 4.95603 5.03524 5.06272 5.22704 5.29905 5.56884 5.58851 5.62967 6.08531 6.30671 6.32149 6.71288 7.10964 7.35689 7.40568 8.13734 8.39157 9.36336 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.002746 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.462014 B =10193.530278 C =11639.733185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.314 6.314 3 C 0.105 3.895 4 C -0.118 4.118 5 C -0.082 4.082 6 C 0.125 3.875 7 C -0.329 4.329 8 C 0.595 3.405 9 O -0.592 6.592 10 N -0.709 5.709 11 C 0.134 3.866 12 C 0.160 3.840 13 H 0.080 0.920 14 C 0.065 3.935 15 O -0.584 6.584 16 N -0.722 5.722 17 C -0.234 4.234 18 H 0.082 0.918 19 C -0.071 4.071 20 N -0.966 5.966 21 Si 0.967 3.033 22 H -0.282 1.282 23 H -0.304 1.304 24 H -0.275 1.275 25 C 0.120 3.880 26 N -0.334 5.334 27 N -0.243 5.243 28 C 0.039 3.961 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.192 0.808 33 H 0.164 0.836 34 H 0.407 0.593 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.066 0.934 39 H 0.385 0.615 40 H 0.372 0.628 41 H 0.247 0.753 42 H 0.213 0.787 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.457 -12.877 -10.475 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.227 6.227 3 C 0.056 3.944 4 C -0.141 4.141 5 C -0.102 4.102 6 C 0.002 3.998 7 C -0.344 4.344 8 C 0.385 3.615 9 O -0.476 6.476 10 N -0.358 5.358 11 C 0.010 3.990 12 C 0.051 3.949 13 H 0.098 0.902 14 C -0.016 4.016 15 O -0.390 6.390 16 N -0.362 5.362 17 C -0.366 4.366 18 H 0.100 0.900 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.797 3.203 22 H -0.209 1.209 23 H -0.231 1.231 24 H -0.201 1.201 25 C -0.059 4.059 26 N -0.157 5.157 27 N -0.007 5.007 28 C -0.088 4.088 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.209 0.791 33 H 0.182 0.818 34 H 0.243 0.757 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.233 0.767 40 H 0.204 0.796 41 H 0.056 0.944 42 H 0.229 0.771 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -17.149 -14.501 -10.508 24.795 hybrid contribution 1.062 1.597 0.709 2.045 sum -16.087 -12.904 -9.799 22.832 Atomic orbital electron populations 1.23560 0.74976 1.06498 1.03090 1.86095 1.24295 1.23504 1.88762 1.17905 0.90230 0.86513 0.99733 1.21959 1.03300 0.89764 0.99101 1.20834 0.89612 1.00827 0.98926 1.19583 0.93633 0.86326 1.00213 1.19687 0.92422 0.92906 1.29392 1.17022 0.84684 0.84529 0.75264 1.90671 1.20486 1.82055 1.54357 1.45674 1.09693 1.06297 1.74173 1.21354 0.97075 0.79096 1.01512 1.20868 0.90198 0.91615 0.92216 0.90207 1.22873 0.93422 0.97975 0.87314 1.86531 1.72366 1.32530 1.47603 1.42474 1.02917 1.73595 1.17179 1.19575 0.84033 1.32528 1.00478 0.90032 1.25463 1.01709 1.02658 0.96539 1.69842 1.35416 1.49295 1.07120 0.85311 0.81139 0.77638 0.76200 1.20855 1.23117 1.20117 1.24376 0.98887 0.90712 0.91923 1.77604 0.89570 1.15694 1.32871 1.45757 1.06158 1.05015 1.43771 1.20458 0.92194 0.87645 1.08485 0.90962 0.90747 0.85604 0.79072 0.81841 0.75652 0.93153 0.90357 0.94552 0.91584 0.76737 0.79605 0.94398 0.77086 0.79000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.17 16 2 O -0.31 -4.06 10.48 -93.63 -0.98 -5.04 16 3 C 0.11 1.77 6.63 22.22 0.15 1.92 16 4 C -0.12 -1.82 9.04 22.39 0.20 -1.62 16 5 C -0.08 -1.94 9.72 22.29 0.22 -1.73 16 6 C 0.13 3.81 6.76 39.53 0.27 4.08 16 7 C -0.33 -11.29 6.17 -19.89 -0.12 -11.41 16 8 C 0.60 22.36 7.78 86.41 0.67 23.03 16 9 O -0.59 -24.34 15.70 -4.43 -0.07 -24.40 16 10 N -0.71 -25.71 5.38 -467.19 -2.51 -28.22 16 11 C 0.13 4.83 5.12 86.38 0.44 5.27 16 12 C 0.16 5.95 2.84 44.99 0.13 6.08 16 13 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 14 C 0.06 2.14 6.86 71.98 0.49 2.63 16 15 O -0.58 -20.39 12.64 -148.98 -1.88 -22.27 16 16 N -0.72 -34.47 4.51 -322.93 -1.46 -35.92 16 17 C -0.23 -12.19 9.93 84.04 0.83 -11.35 16 18 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.97 -58.57 13.06 21.65 0.28 -58.28 16 21 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 25 C 0.12 3.86 11.44 85.40 0.98 4.84 16 26 N -0.33 -10.83 12.58 -56.63 -0.71 -11.55 16 27 N -0.24 -7.01 3.86 -186.83 -0.72 -7.73 16 28 C 0.04 0.84 11.10 83.39 0.93 1.77 16 29 H 0.07 0.18 7.67 -2.39 -0.02 0.16 16 30 H 0.07 0.14 7.67 -2.39 -0.02 0.12 16 31 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.19 1.28 6.36 -2.91 -0.02 1.26 16 33 H 0.16 3.96 7.11 -2.91 -0.02 3.94 16 34 H 0.41 14.69 7.06 -92.71 -0.65 14.04 16 35 H 0.05 2.08 7.40 -2.38 -0.02 2.07 16 36 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.38 9.40 9.12 -74.06 -0.68 8.72 16 40 H 0.37 20.29 7.80 -92.71 -0.72 19.57 16 41 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 42 H 0.21 6.08 7.46 -2.91 -0.02 6.05 16 43 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -76.99 370.24 -0.22 -77.21 By element: Atomic # 1 Polarization: 48.84 SS G_CDS: -0.96 Total: 47.87 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 6.76 Total: 21.19 kcal Atomic # 7 Polarization: -136.59 SS G_CDS: -5.12 Total: -141.71 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -2.93 Total: -51.72 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.99 -0.22 -77.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486042367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.056 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds