Wall clock time and date at job start Tue Mar 31 2020 18:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48505 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47357 * 300.00150 * 3 2 1 6 6 H 1.48497 * 109.47102 * 60.00826 * 3 2 1 7 7 C 1.38813 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00286 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00367 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47097 * 325.01046 * 10 9 7 12 12 C 1.53001 * 109.47324 * 205.00567 * 10 9 7 13 13 N 1.46494 * 109.47179 * 54.99947 * 12 10 9 14 14 C 1.34780 * 120.00067 * 179.97438 * 13 12 10 15 15 O 1.21636 * 119.99933 * 0.02562 * 14 13 12 16 16 C 1.47192 * 119.99943 * 179.97438 * 14 13 12 17 17 C 1.35619 * 123.19102 * 359.75497 * 16 14 13 18 18 S 1.70265 * 110.84181 * 179.77898 * 17 16 14 19 19 C 1.75588 * 92.62670 * 0.25872 * 18 17 16 20 20 C 1.34004 * 110.60169 * 359.97438 * 19 18 17 21 21 C 1.52016 * 123.46688 * 180.02562 * 20 19 18 22 22 C 1.53037 * 108.75289 * 342.85569 * 21 20 19 23 23 C 1.53163 * 109.20075 * 50.67115 * 22 21 20 24 24 C 1.51616 * 125.04851 * 180.02562 * 19 18 17 25 25 C 1.52998 * 109.46746 * 85.00456 * 10 9 7 26 26 C 1.52999 * 117.50364 * 8.74957 * 25 10 9 27 27 C 1.53003 * 117.50226 * 300.08442 * 25 10 9 28 28 H 0.97002 * 120.00110 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99488 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47033 * 295.00044 * 12 10 9 31 31 H 1.08998 * 109.47202 * 175.00457 * 12 10 9 32 32 H 0.97001 * 119.99866 * 0.02562 * 13 12 10 33 33 H 1.08002 * 124.58026 * 0.06559 * 17 16 14 34 34 H 1.08997 * 109.58579 * 102.63550 * 21 20 19 35 35 H 1.08995 * 109.58845 * 223.07392 * 21 20 19 36 36 H 1.08999 * 109.52076 * 170.58890 * 22 21 20 37 37 H 1.09005 * 109.51713 * 290.75504 * 22 21 20 38 38 H 1.08994 * 109.54097 * 49.50023 * 23 22 21 39 39 H 1.09000 * 109.53706 * 169.75225 * 23 22 21 40 40 H 1.08991 * 109.59625 * 43.61972 * 24 19 18 41 41 H 1.08995 * 109.59527 * 283.15611 * 24 19 18 42 42 H 1.09007 * 115.55208 * 154.41670 * 25 10 9 43 43 H 1.09005 * 117.49483 * 359.97438 * 26 25 10 44 44 H 1.08998 * 117.50436 * 145.01788 * 26 25 10 45 45 H 1.09001 * 117.50100 * 214.98056 * 27 25 10 46 46 H 1.08997 * 117.49715 * 0.02562 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5505 -0.5898 12 6 1.1810 -4.7521 -0.6103 13 7 0.7345 -4.3355 -1.9419 14 6 -0.0545 -5.1477 -2.6729 15 8 -0.3961 -6.2265 -2.2268 16 6 -0.5035 -4.7288 -4.0106 17 6 -0.1668 -3.5392 -4.5680 18 16 -0.8500 -3.3822 -6.1197 19 6 -1.6226 -4.9562 -6.0269 20 6 -1.3512 -5.5465 -4.8549 21 6 -1.8736 -6.9204 -4.4674 22 6 -3.0409 -7.2809 -5.3891 23 6 -2.6156 -7.0723 -6.8456 24 6 -2.4788 -5.5714 -7.1166 25 6 2.4218 -4.0356 1.4365 26 6 1.8131 -3.1987 2.5634 27 6 3.2993 -3.0602 2.2237 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 0.3133 -4.9201 0.0278 31 1 1.7558 -5.6746 -0.6919 32 1 1.0072 -3.4753 -2.2977 33 1 0.4548 -2.7941 -4.0938 34 1 -1.0790 -7.6582 -4.5783 35 1 -2.2168 -6.9025 -3.4330 36 1 -3.3169 -8.3243 -5.2363 37 1 -3.8940 -6.6410 -5.1636 38 1 -1.6579 -7.5628 -7.0196 39 1 -3.3693 -7.4955 -7.5096 40 1 -2.0042 -5.4168 -8.0854 41 1 -3.4652 -5.1077 -7.1120 42 1 2.5631 -5.1006 1.6206 43 1 1.1538 -2.3779 2.2810 44 1 1.5542 -3.7129 3.4889 45 1 4.0175 -3.4836 2.9259 46 1 3.6171 -2.1485 1.7180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490736592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:55 Heat of formation + Delta-G solvation = 14.058226 kcal Electronic energy + Delta-G solvation = -26453.536720 eV Core-core repulsion = 22855.871378 eV Total energy + Delta-G solvation = -3597.665342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.85949 -38.41133 -37.49710 -34.95554 -34.44040 -33.25743 -30.94197 -30.82047 -29.25717 -27.94195 -24.91623 -23.60722 -23.33250 -22.69376 -21.70336 -21.35325 -19.79577 -18.99243 -18.21262 -17.68079 -17.17910 -16.60421 -15.44518 -15.31287 -14.87364 -14.62330 -14.52100 -14.38685 -13.96278 -13.90477 -13.62572 -13.42161 -13.04085 -12.96241 -12.83760 -12.61695 -12.19840 -12.03174 -11.55768 -11.44909 -11.28195 -11.18142 -10.95026 -10.92353 -10.87510 -10.77166 -10.53151 -10.40346 -10.12025 -9.73017 -9.59377 -9.41591 -9.17372 -9.01864 -8.69209 -8.54260 -8.21287 -7.10328 -5.87181 -3.17543 0.87523 1.55951 1.99170 2.07666 3.35276 3.42250 3.44168 3.57410 3.66707 4.46735 4.49799 4.62045 4.72806 4.76374 4.91679 5.09986 5.23869 5.31752 5.36798 5.44075 5.44932 5.51074 5.55196 5.57338 5.69046 5.72851 5.81819 5.83665 5.84560 5.97469 5.98540 6.04306 6.06380 6.11941 6.22364 6.26723 6.37408 6.44886 6.61351 6.64134 6.74159 6.90647 6.99858 7.26475 7.62710 7.96076 8.29724 8.59481 9.42219 9.96166 10.32496 11.34114 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.003264 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.607555 B = 8575.885708 C =10160.476411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.192 3.808 11 H 0.057 0.943 12 C 0.121 3.879 13 N -0.707 5.707 14 C 0.573 3.427 15 O -0.548 6.548 16 C -0.147 4.147 17 C -0.204 4.204 18 S 0.175 5.825 19 C -0.217 4.217 20 C -0.050 4.050 21 C -0.052 4.052 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.042 4.042 25 C -0.177 4.177 26 C -0.163 4.163 27 C -0.176 4.176 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.408 0.592 33 H 0.174 0.826 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 -11.704 -12.608 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.081 3.919 11 H 0.074 0.926 12 C -0.004 4.004 13 N -0.358 5.358 14 C 0.358 3.642 15 O -0.428 6.428 16 C -0.164 4.164 17 C -0.342 4.342 18 S 0.444 5.556 19 C -0.333 4.333 20 C -0.061 4.061 21 C -0.091 4.091 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.081 4.081 25 C -0.199 4.199 26 C -0.200 4.200 27 C -0.213 4.213 28 H 0.065 0.935 29 H 0.221 0.779 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.192 0.808 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.740 -11.116 -13.390 17.617 hybrid contribution 0.471 0.593 1.300 1.505 sum -2.268 -10.522 -12.090 16.188 Atomic orbital electron populations 1.69668 1.05007 1.25634 1.57136 1.24708 0.95402 0.97526 1.02775 0.86214 0.78875 0.84448 0.77212 1.20580 1.21959 1.21879 1.19211 0.90931 0.83791 1.43182 0.91014 1.42492 1.05868 0.99496 1.88108 1.19995 0.94066 0.86075 0.91773 0.92558 1.21582 0.98800 0.97407 0.82582 1.45846 1.50455 1.21645 1.17866 1.17586 0.78476 0.84218 0.83933 1.90719 1.57298 1.22458 1.72329 1.20157 1.04219 0.95177 0.96873 1.25549 1.06052 1.01348 1.01230 1.82835 1.44608 1.15746 1.12368 1.24642 1.08737 0.99363 1.00558 1.20372 0.96895 0.97180 0.91657 1.20500 0.97107 0.91043 1.00419 1.21635 0.98354 1.01510 0.94509 1.21579 1.01885 0.94927 0.97051 1.20267 0.97841 0.95303 0.94666 1.23060 1.05977 0.95358 0.95500 1.22914 0.96687 1.03513 0.96870 1.22853 0.93491 1.01877 1.03034 0.93487 0.77908 0.91578 0.91763 0.75546 0.80831 0.90479 0.89073 0.91369 0.91699 0.91508 0.91329 0.90706 0.90434 0.89603 0.86356 0.91278 0.91016 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.03 13.06 55.49 0.72 -25.31 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 21.17 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -5.92 8.15 -15.06 -0.12 -6.04 16 8 H 0.07 1.76 6.91 -52.49 -0.36 1.39 16 9 N -0.72 -15.84 3.08 -53.43 -0.16 -16.00 16 10 C 0.19 3.51 2.86 -67.93 -0.19 3.32 16 11 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 12 C 0.12 2.07 5.22 -4.04 -0.02 2.05 16 13 N -0.71 -12.09 5.35 -61.46 -0.33 -12.42 16 14 C 0.57 10.09 7.79 -12.62 -0.10 9.99 16 15 O -0.55 -10.70 14.61 5.25 0.08 -10.62 16 16 C -0.15 -2.29 5.97 -104.56 -0.62 -2.92 16 17 C -0.20 -2.87 10.35 29.80 0.31 -2.56 16 18 S 0.18 2.05 22.99 -107.50 -2.47 -0.42 16 19 C -0.22 -2.61 6.32 -35.35 -0.22 -2.83 16 20 C -0.05 -0.70 5.95 -102.82 -0.61 -1.31 16 21 C -0.05 -0.66 5.06 -27.21 -0.14 -0.80 16 22 C -0.12 -1.19 5.90 -26.63 -0.16 -1.35 16 23 C -0.12 -0.96 5.93 -26.58 -0.16 -1.12 16 24 C -0.04 -0.37 6.26 -27.37 -0.17 -0.55 16 25 C -0.18 -3.08 5.70 -90.62 -0.52 -3.60 16 26 C -0.16 -3.04 9.74 -26.69 -0.26 -3.30 16 27 C -0.18 -3.12 9.87 -26.69 -0.26 -3.38 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 9.44 7.80 -40.82 -0.32 9.12 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 6.98 6.60 -40.82 -0.27 6.71 16 33 H 0.17 2.38 6.97 -52.49 -0.37 2.01 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.35 6.95 -51.93 -0.36 0.98 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.34 8.11 -51.92 -0.42 0.92 16 43 H 0.12 2.65 6.68 -51.93 -0.35 2.30 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.10 2.03 6.22 -51.93 -0.32 1.71 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -28.23 378.68 -11.80 -40.03 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -6.97 Total: 17.60 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -3.35 Total: -14.71 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.23 Total: -53.72 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.47 Total: -0.42 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.23 -11.80 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490736592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.085 kcal (2) G-P(sol) polarization free energy of solvation -28.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds