Wall clock time and date at job start Tue Mar 31 2020 18:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48505 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47357 * 300.00150 * 3 2 1 6 6 H 1.48497 * 109.47102 * 60.00826 * 3 2 1 7 7 C 1.38813 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00286 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00367 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47097 * 325.01046 * 10 9 7 12 12 C 1.53001 * 109.47324 * 205.00567 * 10 9 7 13 13 N 1.46494 * 109.47179 * 54.99947 * 12 10 9 14 14 C 1.34780 * 120.00067 * 179.97438 * 13 12 10 15 15 O 1.21636 * 119.99933 * 0.02562 * 14 13 12 16 16 C 1.47192 * 119.99943 * 179.97438 * 14 13 12 17 17 C 1.35619 * 123.19102 * 359.75497 * 16 14 13 18 18 S 1.70265 * 110.84181 * 179.77898 * 17 16 14 19 19 C 1.75588 * 92.62670 * 0.25872 * 18 17 16 20 20 C 1.34004 * 110.60169 * 359.97438 * 19 18 17 21 21 C 1.52016 * 123.46688 * 180.02562 * 20 19 18 22 22 C 1.53037 * 108.75289 * 342.85569 * 21 20 19 23 23 C 1.53163 * 109.20075 * 50.67115 * 22 21 20 24 24 C 1.51616 * 125.04851 * 180.02562 * 19 18 17 25 25 C 1.52998 * 109.46746 * 85.00456 * 10 9 7 26 26 C 1.52999 * 117.50364 * 8.74957 * 25 10 9 27 27 C 1.53003 * 117.50226 * 300.08442 * 25 10 9 28 28 H 0.97002 * 120.00110 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99488 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47033 * 295.00044 * 12 10 9 31 31 H 1.08998 * 109.47202 * 175.00457 * 12 10 9 32 32 H 0.97001 * 119.99866 * 0.02562 * 13 12 10 33 33 H 1.08002 * 124.58026 * 0.06559 * 17 16 14 34 34 H 1.08997 * 109.58579 * 102.63550 * 21 20 19 35 35 H 1.08995 * 109.58845 * 223.07392 * 21 20 19 36 36 H 1.08999 * 109.52076 * 170.58890 * 22 21 20 37 37 H 1.09005 * 109.51713 * 290.75504 * 22 21 20 38 38 H 1.08994 * 109.54097 * 49.50023 * 23 22 21 39 39 H 1.09000 * 109.53706 * 169.75225 * 23 22 21 40 40 H 1.08991 * 109.59625 * 43.61972 * 24 19 18 41 41 H 1.08995 * 109.59527 * 283.15611 * 24 19 18 42 42 H 1.09007 * 115.55208 * 154.41670 * 25 10 9 43 43 H 1.09005 * 117.49483 * 359.97438 * 26 25 10 44 44 H 1.08998 * 117.50436 * 145.01788 * 26 25 10 45 45 H 1.09001 * 117.50100 * 214.98056 * 27 25 10 46 46 H 1.08997 * 117.49715 * 0.02562 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5505 -0.5898 12 6 1.1810 -4.7521 -0.6103 13 7 0.7345 -4.3355 -1.9419 14 6 -0.0545 -5.1477 -2.6729 15 8 -0.3961 -6.2265 -2.2268 16 6 -0.5035 -4.7288 -4.0106 17 6 -0.1668 -3.5392 -4.5680 18 16 -0.8500 -3.3822 -6.1197 19 6 -1.6226 -4.9562 -6.0269 20 6 -1.3512 -5.5465 -4.8549 21 6 -1.8736 -6.9204 -4.4674 22 6 -3.0409 -7.2809 -5.3891 23 6 -2.6156 -7.0723 -6.8456 24 6 -2.4788 -5.5714 -7.1166 25 6 2.4218 -4.0356 1.4365 26 6 1.8131 -3.1987 2.5634 27 6 3.2993 -3.0602 2.2237 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 0.3133 -4.9201 0.0278 31 1 1.7558 -5.6746 -0.6919 32 1 1.0072 -3.4753 -2.2977 33 1 0.4548 -2.7941 -4.0938 34 1 -1.0790 -7.6582 -4.5783 35 1 -2.2168 -6.9025 -3.4330 36 1 -3.3169 -8.3243 -5.2363 37 1 -3.8940 -6.6410 -5.1636 38 1 -1.6579 -7.5628 -7.0196 39 1 -3.3693 -7.4955 -7.5096 40 1 -2.0042 -5.4168 -8.0854 41 1 -3.4652 -5.1077 -7.1120 42 1 2.5631 -5.1006 1.6206 43 1 1.1538 -2.3779 2.2810 44 1 1.5542 -3.7129 3.4889 45 1 4.0175 -3.4836 2.9259 46 1 3.6171 -2.1485 1.7180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490736592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:54 Heat of formation + Delta-G solvation = -0.424854 kcal Electronic energy + Delta-G solvation = -26454.164753 eV Core-core repulsion = 22855.871378 eV Total energy + Delta-G solvation = -3598.293375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11172 -39.59368 -38.90923 -36.05798 -35.79869 -35.05588 -32.63780 -31.67648 -30.49346 -29.37077 -26.24547 -25.34306 -24.23858 -23.98355 -23.04175 -22.55223 -21.14687 -20.39505 -19.31250 -19.14123 -18.55628 -17.87434 -16.87231 -16.74816 -16.32406 -16.15691 -15.73061 -15.38396 -15.26900 -15.19432 -14.76123 -14.68372 -14.52347 -14.15242 -14.04197 -13.62969 -13.58460 -13.12229 -12.95839 -12.90436 -12.66836 -12.58943 -12.48272 -12.36431 -12.11389 -11.93963 -11.70837 -11.62972 -11.59712 -11.23990 -11.06016 -10.98772 -10.74545 -10.62306 -10.08336 -9.57047 -9.24257 -9.01369 -7.89809 -5.17825 -0.22694 0.57277 0.94918 0.96191 1.46559 1.49755 1.56610 2.23527 2.35416 2.56801 3.12420 3.45038 3.59075 3.83686 3.86347 3.95153 4.04264 4.05357 4.12112 4.26163 4.28549 4.31800 4.36105 4.48398 4.56701 4.60733 4.65409 4.66391 4.71073 4.90831 4.91967 4.95905 5.01798 5.02392 5.13112 5.16706 5.21859 5.23979 5.36412 5.40923 5.46815 5.53299 5.62038 5.65436 5.67482 6.29794 6.56244 7.20849 7.38266 8.08424 8.34364 9.32586 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.003264 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.607555 B = 8575.885708 C =10160.476411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.303 1.303 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.721 5.721 10 C 0.193 3.807 11 H 0.060 0.940 12 C 0.129 3.871 13 N -0.707 5.707 14 C 0.568 3.432 15 O -0.574 6.574 16 C -0.172 4.172 17 C -0.219 4.219 18 S 0.229 5.771 19 C -0.209 4.209 20 C -0.079 4.079 21 C -0.049 4.049 22 C -0.118 4.118 23 C -0.111 4.111 24 C -0.044 4.044 25 C -0.169 4.169 26 C -0.173 4.173 27 C -0.169 4.169 28 H 0.247 0.753 29 H 0.373 0.627 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.407 0.593 33 H 0.171 0.829 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 -12.695 -14.340 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.258 4.258 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.226 1.226 6 H -0.231 1.231 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.361 5.361 10 C 0.084 3.916 11 H 0.078 0.922 12 C 0.005 3.995 13 N -0.357 5.357 14 C 0.355 3.645 15 O -0.456 6.456 16 C -0.190 4.190 17 C -0.358 4.358 18 S 0.499 5.501 19 C -0.326 4.326 20 C -0.089 4.089 21 C -0.088 4.088 22 C -0.156 4.156 23 C -0.150 4.150 24 C -0.083 4.083 25 C -0.190 4.190 26 C -0.210 4.210 27 C -0.205 4.205 28 H 0.056 0.944 29 H 0.206 0.794 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.244 0.756 33 H 0.189 0.811 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.120 0.880 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.067 -12.129 -15.129 19.500 hybrid contribution 0.309 0.862 1.811 2.029 sum -1.759 -11.268 -13.318 17.533 Atomic orbital electron populations 1.69809 1.06320 1.25458 1.59855 1.25297 0.95958 1.00170 1.04332 0.85328 0.78493 0.81280 0.76191 1.19213 1.22554 1.23055 1.19452 0.91092 0.84502 1.39915 0.90564 1.42540 1.05255 1.00306 1.87954 1.20116 0.93850 0.84789 0.92827 0.92219 1.21483 0.98120 0.97504 0.82380 1.45841 1.50512 1.21571 1.17803 1.17965 0.77989 0.83827 0.84716 1.90692 1.58243 1.23497 1.73147 1.20190 1.05943 0.96452 0.96452 1.25680 1.06294 1.00857 1.02936 1.82609 1.42858 1.14905 1.09693 1.25156 1.07707 0.99214 1.00548 1.20515 0.97948 0.97935 0.92483 1.20433 0.98071 0.90659 0.99669 1.21624 0.96755 1.02266 0.94947 1.21586 1.02636 0.94591 0.96191 1.20489 0.98003 0.95558 0.94299 1.23043 1.05146 0.96819 0.93982 1.22773 0.96804 1.03057 0.98410 1.22845 0.93342 1.01108 1.03255 0.94422 0.79431 0.93008 0.90110 0.75625 0.81143 0.91236 0.91968 0.89978 0.91893 0.91713 0.88606 0.88574 0.89056 0.86667 0.90480 0.89099 0.87972 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.81 13.06 21.65 0.28 -55.52 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.96 44.16 29.55 68.60 2.03 46.19 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.22 -10.81 8.15 84.03 0.69 -10.13 16 8 H 0.08 3.69 6.91 -2.91 -0.02 3.67 16 9 N -0.72 -32.31 3.08 -322.95 -0.99 -33.31 16 10 C 0.19 6.99 2.86 44.99 0.13 7.12 16 11 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 12 C 0.13 4.44 5.22 86.38 0.45 4.89 16 13 N -0.71 -24.79 5.35 -466.60 -2.50 -27.29 16 14 C 0.57 20.76 7.79 86.59 0.67 21.43 16 15 O -0.57 -23.30 14.61 -4.15 -0.06 -23.36 16 16 C -0.17 -5.52 5.97 -19.82 -0.12 -5.64 16 17 C -0.22 -6.21 10.35 67.21 0.70 -5.51 16 18 S 0.23 5.00 22.99 -56.49 -1.30 3.70 16 19 C -0.21 -4.70 6.32 25.01 0.16 -4.54 16 20 C -0.08 -2.21 5.95 -18.70 -0.11 -2.32 16 21 C -0.05 -1.28 5.06 30.28 0.15 -1.13 16 22 C -0.12 -2.15 5.90 30.66 0.18 -1.96 16 23 C -0.11 -1.54 5.93 30.69 0.18 -1.36 16 24 C -0.04 -0.66 6.26 30.18 0.19 -0.47 16 25 C -0.17 -5.58 5.70 -10.79 -0.06 -5.65 16 26 C -0.17 -6.35 9.74 30.62 0.30 -6.05 16 27 C -0.17 -5.68 9.87 30.62 0.30 -5.38 16 28 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.37 18.87 7.80 -92.71 -0.72 18.15 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.41 14.35 6.60 -92.71 -0.61 13.74 16 33 H 0.17 4.80 6.97 -2.91 -0.02 4.78 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.95 6.95 -2.39 -0.02 1.94 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.16 8.10 -2.38 -0.02 1.14 16 38 H 0.06 0.95 8.11 -2.39 -0.02 0.93 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 42 H 0.12 3.22 8.11 -2.38 -0.02 3.20 16 43 H 0.08 3.53 6.68 -2.38 -0.02 3.51 16 44 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 46 H 0.08 3.05 6.22 -2.39 -0.01 3.03 16 Total: -1.00 -62.69 378.68 1.41 -61.28 By element: Atomic # 1 Polarization: 48.35 SS G_CDS: -0.33 Total: 48.02 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 4.27 Total: -19.70 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -3.21 Total: -116.12 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.30 Total: 3.70 kcal Total: -62.69 1.41 -61.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490736592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.857 kcal (2) G-P(sol) polarization free energy of solvation -62.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds