Wall clock time and date at job start Tue Mar 31 2020 17:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42099 * 108.58110 * 2 1 4 4 O 1.42099 * 108.58253 * 131.03004 * 2 1 3 5 5 C 1.81401 * 101.92134 * 245.51698 * 2 1 3 6 6 C 1.52997 * 109.47197 * 185.32836 * 5 2 1 7 7 C 1.53000 * 115.54927 * 294.04511 * 6 5 2 8 8 C 1.50700 * 109.47346 * 295.80995 * 7 6 5 9 9 O 1.21276 * 119.99602 * 5.15870 * 8 7 6 10 10 N 1.34780 * 119.99916 * 185.16636 * 8 7 6 11 11 C 1.46496 * 119.99955 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47295 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47182 * 304.99786 * 12 11 10 14 14 O 1.42903 * 109.46879 * 65.00085 * 12 11 10 15 15 C 1.53001 * 109.47127 * 184.99949 * 12 11 10 16 16 N 1.46506 * 109.46724 * 180.02562 * 15 12 11 17 17 C 1.36938 * 119.99331 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00746 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99539 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99847 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00099 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46919 * 90.00013 * 21 19 17 23 23 H 1.48501 * 109.46944 * 210.00217 * 21 19 17 24 24 H 1.48495 * 109.46998 * 330.00149 * 21 19 17 25 25 C 1.53006 * 117.50216 * 148.38067 * 6 5 2 26 26 C 1.53001 * 117.50113 * 79.71779 * 6 5 2 27 27 H 1.09001 * 109.47553 * 54.48593 * 1 2 3 28 28 H 1.09010 * 109.46943 * 174.48789 * 1 2 3 29 29 H 1.08997 * 109.47159 * 294.48297 * 1 2 3 30 30 H 1.09005 * 109.47024 * 305.32115 * 5 2 1 31 31 H 1.08993 * 109.47716 * 65.32331 * 5 2 1 32 32 H 1.09005 * 109.46631 * 55.80510 * 7 6 5 33 33 H 1.08996 * 109.47333 * 175.80356 * 7 6 5 34 34 H 0.96997 * 119.99906 * 359.97438 * 10 8 7 35 35 H 1.09011 * 109.47066 * 300.00024 * 11 10 8 36 36 H 1.09001 * 109.47308 * 59.99661 * 11 10 8 37 37 H 0.96688 * 114.00610 * 60.00221 * 14 12 11 38 38 H 1.08997 * 109.47139 * 299.99470 * 15 12 11 39 39 H 1.09001 * 109.47260 * 60.00015 * 15 12 11 40 40 H 0.96993 * 120.00119 * 359.97438 * 16 15 12 41 41 H 0.96994 * 120.00147 * 179.97438 * 20 19 17 42 42 H 1.09005 * 117.49371 * 359.97438 * 25 6 5 43 43 H 1.08993 * 117.50304 * 145.01879 * 25 6 5 44 44 H 1.09007 * 117.49978 * 214.97677 * 26 6 5 45 45 H 1.08998 * 117.49795 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 1.0161 5 6 2.1887 -0.7356 -1.6153 6 6 3.6993 -0.9413 -1.7439 7 6 4.5384 0.3374 -1.7831 8 6 4.1947 1.1262 -3.0203 9 8 3.2961 0.7556 -3.7455 10 7 4.8861 2.2435 -3.3208 11 6 4.5523 3.0100 -4.5238 12 6 5.4798 4.2221 -4.6299 13 1 5.4203 4.8066 -3.7118 14 8 6.8238 3.7778 -4.8255 15 6 5.0518 5.0896 -5.8153 16 7 5.9403 6.2500 -5.9172 17 6 5.7490 7.1736 -6.9099 18 1 4.9435 7.0465 -7.6180 19 6 6.5906 8.2734 -7.0061 20 7 6.4065 9.1615 -7.9600 21 14 7.9835 8.4937 -5.7810 22 1 9.2057 7.8258 -6.2958 23 1 8.2527 9.9420 -5.5928 24 1 7.5992 7.8886 -4.4806 25 6 4.1820 -2.1288 -2.5793 26 6 4.3070 -2.1643 -1.0540 27 1 -0.3634 0.5970 -0.8365 28 1 -0.3633 -1.0230 -0.0987 29 1 -0.3633 0.4259 0.9352 30 1 1.6824 -1.6969 -1.7030 31 1 1.8440 -0.0699 -2.4065 32 1 4.3265 0.9382 -0.8986 33 1 5.5967 0.0771 -1.8004 34 1 5.6046 2.5400 -2.7406 35 1 4.6773 2.3783 -5.4034 36 1 3.5180 3.3485 -4.4637 37 1 6.9512 3.2503 -5.6257 38 1 5.1114 4.5052 -6.7334 39 1 4.0266 5.4285 -5.6661 40 1 6.6635 6.3644 -5.2810 41 1 6.9943 9.9302 -8.0270 42 1 3.4233 -2.7637 -3.0369 43 1 5.0975 -1.9992 -3.1564 44 1 5.3049 -2.0580 -0.6284 45 1 3.6305 -2.8225 -0.5089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496981831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:18 Heat of formation + Delta-G solvation = -116.153995 kcal Electronic energy + Delta-G solvation = -26948.181479 eV Core-core repulsion = 22901.727697 eV Total energy + Delta-G solvation = -4046.453782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27757 -38.41730 -37.51611 -37.27924 -36.33538 -34.50368 -34.12276 -31.53576 -30.63508 -30.35802 -29.44959 -28.49718 -25.43071 -22.87371 -22.36580 -21.54514 -20.91323 -19.86304 -19.14278 -17.77888 -17.52288 -16.92233 -16.72782 -16.45145 -16.31700 -16.11542 -15.51672 -15.21041 -15.00393 -14.55552 -14.50937 -13.86787 -13.77154 -13.66210 -13.65684 -13.30447 -13.12318 -12.92800 -12.55142 -12.40135 -12.31873 -12.21784 -12.05607 -11.95169 -11.91357 -11.61391 -11.36670 -11.30189 -10.87775 -10.86348 -10.79439 -10.26248 -10.17413 -9.92005 -9.66229 -9.52608 -9.16226 -8.93425 -7.26626 -5.78442 -3.14666 -0.41359 2.35363 2.50649 2.88656 3.20712 3.39758 3.41578 3.44773 3.46928 3.61895 3.99651 4.14129 4.26398 4.33826 4.44316 4.45403 4.53427 4.59588 4.67561 4.78481 4.88949 5.05831 5.13794 5.18205 5.22814 5.30824 5.32776 5.45423 5.50505 5.54454 5.63635 5.70129 5.73422 5.79252 5.84529 6.30948 6.40825 6.54380 7.37986 7.76573 7.97541 8.09420 8.40145 9.19736 9.91686 10.11487 11.39600 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002202 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.361230 B =12711.600770 C =13130.577667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.411 3.589 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.570 4.570 6 C -0.105 4.105 7 C -0.127 4.127 8 C 0.519 3.481 9 O -0.541 6.541 10 N -0.721 5.721 11 C 0.090 3.910 12 C 0.084 3.916 13 H 0.105 0.895 14 O -0.556 6.556 15 C 0.131 3.869 16 N -0.750 5.750 17 C -0.248 4.248 18 H 0.089 0.911 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.888 3.112 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.276 1.276 25 C -0.146 4.146 26 C -0.167 4.167 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.155 0.845 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.376 0.624 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.367 0.633 41 H 0.260 0.740 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 -26.731 17.163 33.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.594 3.406 3 O -0.934 6.934 4 O -0.935 6.935 5 C -0.699 4.699 6 C -0.107 4.107 7 C -0.167 4.167 8 C 0.305 3.695 9 O -0.419 6.419 10 N -0.372 5.372 11 C -0.034 4.034 12 C 0.024 3.976 13 H 0.123 0.877 14 O -0.362 6.362 15 C 0.003 3.997 16 N -0.396 5.396 17 C -0.378 4.378 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.581 5.581 21 Si 0.719 3.281 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.202 1.202 25 C -0.184 4.184 26 C -0.204 4.204 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.172 0.828 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.240 0.760 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.223 0.777 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.200 0.800 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.403 -26.219 17.659 32.980 hybrid contribution 0.477 -0.021 -0.186 0.512 sum -8.926 -26.239 17.472 32.764 Atomic orbital electron populations 1.30300 1.27179 1.11496 1.11933 1.08150 0.78250 0.76176 0.78033 1.93607 1.78665 1.34503 1.86584 1.93586 1.78836 1.66878 1.54190 1.29939 1.02302 1.14433 1.23189 1.20362 0.90491 0.90534 1.09332 1.21496 1.01636 0.95120 0.98436 1.20384 0.81929 0.80635 0.86549 1.90629 1.30768 1.68950 1.51536 1.45927 1.37692 1.26340 1.27284 1.22078 1.00328 0.93331 0.87661 1.22459 0.81692 0.92772 1.00647 0.87711 1.86543 1.27484 1.73917 1.48232 1.21166 0.94798 0.89147 0.94613 1.42565 1.35737 1.24916 1.36373 1.19040 1.12958 1.00142 1.05646 0.89278 1.24683 0.99135 0.97039 0.98228 1.69707 1.40597 1.13735 1.34057 0.86484 0.83172 0.76891 0.81583 1.21020 1.21801 1.20237 1.23024 1.03117 0.98750 0.93491 1.23342 1.03013 0.98448 0.95587 0.85165 0.85434 0.85255 0.85064 0.82752 0.87094 0.87642 0.75982 0.90900 0.90237 0.77684 0.95073 0.94500 0.79998 0.93005 0.88201 0.88241 0.87694 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.63 10.62 101.05 1.07 -1.56 16 2 S 2.41 17.33 5.12 -107.50 -0.55 16.78 16 3 O -0.94 -10.24 16.37 -57.83 -0.95 -11.18 16 4 O -0.94 -9.17 17.86 -57.83 -1.03 -10.20 16 5 C -0.57 -3.77 5.44 37.16 0.20 -3.57 16 6 C -0.11 -0.84 1.07 -154.51 -0.17 -1.00 16 7 C -0.13 -1.09 5.37 -27.88 -0.15 -1.24 16 8 C 0.52 5.86 7.71 -10.98 -0.08 5.78 16 9 O -0.54 -7.41 14.12 5.56 0.08 -7.33 16 10 N -0.72 -7.80 5.50 -60.29 -0.33 -8.13 16 11 C 0.09 1.09 5.31 -4.05 -0.02 1.07 16 12 C 0.08 1.18 3.09 -26.73 -0.08 1.10 16 13 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 14 O -0.56 -7.91 13.03 -35.23 -0.46 -8.37 16 15 C 0.13 2.39 5.92 -4.04 -0.02 2.37 16 16 N -0.75 -17.73 5.30 -59.90 -0.32 -18.05 16 17 C -0.25 -7.06 10.47 -15.06 -0.16 -7.21 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 21 Si 0.89 22.48 27.74 -169.99 -4.71 17.76 16 22 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 25 C -0.15 -1.02 9.94 -26.69 -0.27 -1.28 16 26 C -0.17 -1.08 9.73 -26.69 -0.26 -1.34 16 27 H 0.13 0.39 8.14 -51.92 -0.42 -0.04 16 28 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.13 0.46 8.09 -51.92 -0.42 0.04 16 31 H 0.15 1.18 6.13 -51.93 -0.32 0.86 16 32 H 0.11 0.97 6.26 -51.93 -0.33 0.64 16 33 H 0.11 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.41 3.78 8.47 -40.82 -0.35 3.43 16 35 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.38 4.38 9.04 45.56 0.41 4.79 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.37 8.66 5.40 -40.82 -0.22 8.43 16 41 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -39.14 385.48 -8.02 -47.16 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.30 Total: 11.30 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -0.03 Total: -6.83 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.13 Total: -54.87 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -2.36 Total: -37.09 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.76 kcal Atomic # 16 Polarization: 17.33 SS G_CDS: -0.55 Total: 16.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.14 -8.02 -47.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496981831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.995 kcal (2) G-P(sol) polarization free energy of solvation -39.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds