Wall clock time and date at job start Tue Mar 31 2020 17:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42099 * 108.58110 * 2 1 4 4 O 1.42099 * 108.58253 * 131.03004 * 2 1 3 5 5 C 1.81401 * 101.92134 * 245.51698 * 2 1 3 6 6 C 1.52997 * 109.47197 * 185.32836 * 5 2 1 7 7 C 1.53000 * 115.54927 * 294.04511 * 6 5 2 8 8 C 1.50700 * 109.47346 * 295.80995 * 7 6 5 9 9 O 1.21276 * 119.99602 * 5.15870 * 8 7 6 10 10 N 1.34780 * 119.99916 * 185.16636 * 8 7 6 11 11 C 1.46496 * 119.99955 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47295 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47182 * 304.99786 * 12 11 10 14 14 O 1.42903 * 109.46879 * 65.00085 * 12 11 10 15 15 C 1.53001 * 109.47127 * 184.99949 * 12 11 10 16 16 N 1.46506 * 109.46724 * 180.02562 * 15 12 11 17 17 C 1.36938 * 119.99331 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00746 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99539 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99847 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00099 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46919 * 90.00013 * 21 19 17 23 23 H 1.48501 * 109.46944 * 210.00217 * 21 19 17 24 24 H 1.48495 * 109.46998 * 330.00149 * 21 19 17 25 25 C 1.53006 * 117.50216 * 148.38067 * 6 5 2 26 26 C 1.53001 * 117.50113 * 79.71779 * 6 5 2 27 27 H 1.09001 * 109.47553 * 54.48593 * 1 2 3 28 28 H 1.09010 * 109.46943 * 174.48789 * 1 2 3 29 29 H 1.08997 * 109.47159 * 294.48297 * 1 2 3 30 30 H 1.09005 * 109.47024 * 305.32115 * 5 2 1 31 31 H 1.08993 * 109.47716 * 65.32331 * 5 2 1 32 32 H 1.09005 * 109.46631 * 55.80510 * 7 6 5 33 33 H 1.08996 * 109.47333 * 175.80356 * 7 6 5 34 34 H 0.96997 * 119.99906 * 359.97438 * 10 8 7 35 35 H 1.09011 * 109.47066 * 300.00024 * 11 10 8 36 36 H 1.09001 * 109.47308 * 59.99661 * 11 10 8 37 37 H 0.96688 * 114.00610 * 60.00221 * 14 12 11 38 38 H 1.08997 * 109.47139 * 299.99470 * 15 12 11 39 39 H 1.09001 * 109.47260 * 60.00015 * 15 12 11 40 40 H 0.96993 * 120.00119 * 359.97438 * 16 15 12 41 41 H 0.96994 * 120.00147 * 179.97438 * 20 19 17 42 42 H 1.09005 * 117.49371 * 359.97438 * 25 6 5 43 43 H 1.08993 * 117.50304 * 145.01879 * 25 6 5 44 44 H 1.09007 * 117.49978 * 214.97677 * 26 6 5 45 45 H 1.08998 * 117.49795 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 1.0161 5 6 2.1887 -0.7356 -1.6153 6 6 3.6993 -0.9413 -1.7439 7 6 4.5384 0.3374 -1.7831 8 6 4.1947 1.1262 -3.0203 9 8 3.2961 0.7556 -3.7455 10 7 4.8861 2.2435 -3.3208 11 6 4.5523 3.0100 -4.5238 12 6 5.4798 4.2221 -4.6299 13 1 5.4203 4.8066 -3.7118 14 8 6.8238 3.7778 -4.8255 15 6 5.0518 5.0896 -5.8153 16 7 5.9403 6.2500 -5.9172 17 6 5.7490 7.1736 -6.9099 18 1 4.9435 7.0465 -7.6180 19 6 6.5906 8.2734 -7.0061 20 7 6.4065 9.1615 -7.9600 21 14 7.9835 8.4937 -5.7810 22 1 9.2057 7.8258 -6.2958 23 1 8.2527 9.9420 -5.5928 24 1 7.5992 7.8886 -4.4806 25 6 4.1820 -2.1288 -2.5793 26 6 4.3070 -2.1643 -1.0540 27 1 -0.3634 0.5970 -0.8365 28 1 -0.3633 -1.0230 -0.0987 29 1 -0.3633 0.4259 0.9352 30 1 1.6824 -1.6969 -1.7030 31 1 1.8440 -0.0699 -2.4065 32 1 4.3265 0.9382 -0.8986 33 1 5.5967 0.0771 -1.8004 34 1 5.6046 2.5400 -2.7406 35 1 4.6773 2.3783 -5.4034 36 1 3.5180 3.3485 -4.4637 37 1 6.9512 3.2503 -5.6257 38 1 5.1114 4.5052 -6.7334 39 1 4.0266 5.4285 -5.6661 40 1 6.6635 6.3644 -5.2810 41 1 6.9943 9.9302 -8.0270 42 1 3.4233 -2.7637 -3.0369 43 1 5.0975 -1.9992 -3.1564 44 1 5.3049 -2.0580 -0.6284 45 1 3.6305 -2.8225 -0.5089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496981831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:17 Heat of formation + Delta-G solvation = -150.632673 kcal Electronic energy + Delta-G solvation = -26949.676586 eV Core-core repulsion = 22901.727697 eV Total energy + Delta-G solvation = -4047.948889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09149 -39.33121 -38.43728 -37.93621 -36.97260 -36.18302 -35.25538 -33.49127 -31.60842 -30.79797 -30.28732 -29.30680 -26.91747 -24.08933 -23.34492 -22.85400 -21.83224 -20.52993 -19.82081 -19.69360 -18.36703 -17.66120 -17.50169 -17.21480 -17.18169 -16.98819 -16.54472 -16.19912 -16.13098 -15.75281 -15.43935 -15.18395 -15.03337 -14.60024 -14.31260 -14.05983 -14.02747 -13.96265 -13.62881 -13.50040 -13.29124 -13.14804 -12.98088 -12.83383 -12.78856 -12.57360 -12.42142 -12.24688 -12.19760 -11.89134 -11.86162 -11.84339 -11.45973 -11.13237 -11.02511 -10.82041 -10.39654 -10.07475 -9.32856 -8.04655 -5.38369 -0.91202 1.39494 1.41952 1.49563 1.64689 1.88802 2.07786 2.47746 2.69501 2.83840 3.12845 3.26095 3.35050 3.48755 3.54208 3.60333 3.72758 3.86649 3.98720 4.04711 4.06572 4.10518 4.18270 4.25997 4.42051 4.50566 4.59896 4.64717 4.69560 4.81965 4.83677 4.91273 4.92706 5.07505 5.12208 5.17438 5.26087 5.41384 5.72604 6.19006 6.53852 6.76009 7.06520 7.24075 7.81911 8.01206 9.16634 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002202 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.361230 B =12711.600770 C =13130.577667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.412 3.588 3 O -0.983 6.983 4 O -0.970 6.970 5 C -0.566 4.566 6 C -0.129 4.129 7 C -0.127 4.127 8 C 0.515 3.485 9 O -0.567 6.567 10 N -0.717 5.717 11 C 0.101 3.899 12 C 0.104 3.896 13 H 0.107 0.893 14 O -0.563 6.563 15 C 0.124 3.876 16 N -0.753 5.753 17 C -0.238 4.238 18 H 0.057 0.943 19 C -0.064 4.064 20 N -0.983 5.983 21 Si 0.960 3.040 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.254 1.254 25 C -0.146 4.146 26 C -0.159 4.159 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.136 0.864 30 H 0.162 0.838 31 H 0.144 0.856 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.414 0.586 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.388 0.612 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.369 0.631 41 H 0.259 0.741 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -28.884 18.845 35.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.599 3.401 3 O -0.980 6.980 4 O -0.967 6.967 5 C -0.695 4.695 6 C -0.130 4.130 7 C -0.167 4.167 8 C 0.303 3.697 9 O -0.447 6.447 10 N -0.369 5.369 11 C -0.024 4.024 12 C 0.044 3.956 13 H 0.124 0.876 14 O -0.370 6.370 15 C -0.003 4.003 16 N -0.399 5.399 17 C -0.369 4.369 18 H 0.075 0.925 19 C -0.255 4.255 20 N -0.633 5.633 21 Si 0.787 3.213 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.179 1.179 25 C -0.184 4.184 26 C -0.196 4.196 27 H 0.162 0.838 28 H 0.174 0.826 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.162 0.838 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.250 0.750 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.237 0.763 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.203 0.797 41 H 0.067 0.933 42 H 0.125 0.875 43 H 0.117 0.883 44 H 0.131 0.869 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.330 -28.419 19.382 35.642 hybrid contribution 0.323 0.562 -0.789 1.021 sum -9.007 -27.857 18.593 34.682 Atomic orbital electron populations 1.30173 1.22914 1.13865 1.13030 1.07820 0.79726 0.74774 0.77751 1.93545 1.80599 1.36659 1.87222 1.93541 1.80515 1.67113 1.55531 1.29888 1.02097 1.15765 1.21786 1.20538 0.91187 0.90570 1.10751 1.21556 1.03222 0.95213 0.96675 1.20862 0.81337 0.80505 0.86990 1.90613 1.31844 1.69614 1.52603 1.45875 1.37941 1.26180 1.26919 1.21830 0.99390 0.92667 0.88496 1.22147 0.82078 0.92785 0.98552 0.87570 1.86522 1.27234 1.74136 1.49080 1.21393 0.93888 0.88147 0.96868 1.42555 1.36660 1.25545 1.35177 1.19043 1.11374 1.00829 1.05609 0.92473 1.25529 1.02392 0.97026 1.00596 1.69883 1.42233 1.14673 1.36541 0.85341 0.79554 0.76553 0.79862 1.20442 1.22239 1.17870 1.23085 1.03243 0.98250 0.93871 1.23430 1.03469 0.97355 0.95362 0.83821 0.82596 0.84506 0.81996 0.83756 0.87408 0.85473 0.74994 0.90634 0.90765 0.76302 0.94576 0.94522 0.79712 0.93255 0.87518 0.88346 0.86896 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.55 10.62 113.37 1.20 -2.35 16 2 S 2.41 32.39 5.12 -56.49 -0.29 32.10 16 3 O -0.98 -21.58 16.37 -127.37 -2.08 -23.66 16 4 O -0.97 -18.23 17.86 -127.37 -2.27 -20.51 16 5 C -0.57 -6.61 5.44 71.98 0.39 -6.21 16 6 C -0.13 -1.85 1.07 -52.18 -0.06 -1.90 16 7 C -0.13 -2.04 5.37 29.85 0.16 -1.88 16 8 C 0.52 11.05 7.71 87.66 0.68 11.73 16 9 O -0.57 -15.02 14.12 -3.02 -0.04 -15.06 16 10 N -0.72 -14.42 5.50 -463.06 -2.55 -16.96 16 11 C 0.10 2.29 5.31 86.38 0.46 2.75 16 12 C 0.10 2.74 3.09 30.59 0.09 2.84 16 13 H 0.11 2.82 8.14 -2.39 -0.02 2.81 16 14 O -0.56 -14.63 13.03 -148.98 -1.94 -16.57 16 15 C 0.12 4.40 5.92 86.38 0.51 4.91 16 16 N -0.75 -34.85 5.30 -343.43 -1.82 -36.67 16 17 C -0.24 -13.62 10.47 84.04 0.88 -12.74 16 18 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 19 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 20 N -0.98 -63.41 13.97 21.65 0.30 -63.11 16 21 Si 0.96 46.22 27.74 68.60 1.90 48.12 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 24 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 25 C -0.15 -1.77 9.94 30.62 0.30 -1.47 16 26 C -0.16 -1.76 9.73 30.62 0.30 -1.47 16 27 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.16 0.00 8.14 -2.38 -0.02 -0.02 16 29 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.16 0.73 8.09 -2.39 -0.02 0.71 16 31 H 0.14 2.06 6.13 -2.39 -0.01 2.05 16 32 H 0.11 1.83 6.26 -2.38 -0.01 1.81 16 33 H 0.13 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.41 6.94 8.47 -92.71 -0.79 6.16 16 35 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.39 8.10 9.04 -74.07 -0.67 7.43 16 38 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.37 16.64 5.40 -92.71 -0.50 16.14 16 41 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -85.06 385.48 -4.39 -89.46 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.99 Total: 31.99 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.39 Total: -9.12 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -4.07 Total: -116.74 kcal Atomic # 8 Polarization: -69.46 SS G_CDS: -6.34 Total: -75.81 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Atomic # 16 Polarization: 32.39 SS G_CDS: -0.29 Total: 32.10 kcal Total: -85.06 -4.39 -89.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496981831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.175 kcal (2) G-P(sol) polarization free energy of solvation -85.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds