Wall clock time and date at job start Tue Mar 31 2020 18:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00107 * 2 1 4 4 H 1.48502 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47172 * 299.99857 * 3 2 1 6 6 H 1.48495 * 109.47215 * 60.00004 * 3 2 1 7 7 C 1.38815 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00091 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47060 * 35.00486 * 10 9 7 12 12 C 1.53005 * 109.46831 * 154.99889 * 10 9 7 13 13 N 1.46501 * 109.47085 * 305.00177 * 12 10 9 14 14 C 1.34776 * 119.99681 * 180.02562 * 13 12 10 15 15 O 1.21280 * 119.99923 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00252 * 179.97438 * 14 13 12 17 17 H 1.09004 * 110.66421 * 55.70237 * 16 14 13 18 18 C 1.54705 * 110.74964 * 292.49016 * 16 14 13 19 19 C 1.51653 * 101.92975 * 266.96389 * 18 16 14 20 20 C 1.37754 * 132.15009 * 164.57863 * 19 18 16 21 21 C 1.38528 * 119.96311 * 180.34850 * 20 19 18 22 22 F 1.35098 * 120.14447 * 180.02562 * 21 20 19 23 23 C 1.38481 * 119.71487 * 0.05728 * 21 20 19 24 24 C 1.37928 * 120.31907 * 359.78231 * 23 21 20 25 25 C 1.38855 * 107.04766 * 344.61569 * 19 18 16 26 26 O 1.36638 * 111.28695 * 358.89630 * 25 19 18 27 27 C 1.52997 * 109.47289 * 275.00217 * 10 9 7 28 28 C 1.52993 * 117.50097 * 128.74666 * 27 10 9 29 29 C 1.52998 * 117.49862 * 60.08486 * 27 10 9 30 30 H 0.97000 * 120.00432 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00350 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46872 * 65.00853 * 12 10 9 33 33 H 1.09001 * 109.46455 * 185.00313 * 12 10 9 34 34 H 0.96998 * 120.00018 * 0.02562 * 13 12 10 35 35 H 1.09000 * 110.93767 * 25.12095 * 18 16 14 36 36 H 1.09000 * 110.93805 * 148.76956 * 18 16 14 37 37 H 1.07999 * 120.02113 * 0.36835 * 20 19 18 38 38 H 1.08000 * 119.84110 * 179.79833 * 23 21 20 39 39 H 1.08000 * 119.86393 * 180.02562 * 24 23 21 40 40 H 1.09002 * 115.54867 * 274.41588 * 27 10 9 41 41 H 1.09004 * 117.49769 * 0.02562 * 28 27 10 42 42 H 1.09002 * 117.50139 * 145.01382 * 28 27 10 43 43 H 1.09003 * 117.49629 * 214.97732 * 29 27 10 44 44 H 1.08991 * 117.50070 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5506 0.5901 12 6 1.1807 -4.7522 0.6102 13 7 0.7341 -4.3354 1.9418 14 6 -0.0549 -5.1476 2.6727 15 8 -0.3948 -6.2236 2.2282 16 6 -0.5139 -4.7193 4.0427 17 1 -1.0266 -3.7586 3.9937 18 6 0.6794 -4.6541 5.0250 19 6 0.6474 -6.0358 5.6493 20 6 1.5739 -6.7380 6.3883 21 6 1.2771 -8.0146 6.8369 22 9 2.1828 -8.7064 7.5624 23 6 0.0484 -8.5790 6.5379 24 6 -0.8805 -7.8745 5.8007 25 6 -0.5905 -6.5891 5.3501 26 8 -1.3619 -5.7197 4.6317 27 6 2.4220 -4.0357 -1.4364 28 6 3.8821 -4.3892 -1.7256 29 6 3.3028 -3.0622 -2.2221 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 0.3133 -4.9201 -0.0280 33 1 1.7557 -5.6746 0.6920 34 1 1.0063 -3.4750 2.2974 35 1 1.6152 -4.4897 4.4908 36 1 0.5222 -3.8820 5.7782 37 1 2.5309 -6.2935 6.6182 38 1 -0.1838 -9.5754 6.8838 39 1 -1.8366 -8.3216 5.5721 40 1 1.6541 -4.5775 -1.9886 41 1 4.5835 -4.3524 -0.8920 42 1 4.0749 -5.1635 -2.4682 43 1 3.1147 -2.9640 -3.2913 44 1 3.6227 -2.1518 -1.7155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566722897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:36 Heat of formation + Delta-G solvation = -45.819409 kcal Electronic energy + Delta-G solvation = -28321.527815 eV Core-core repulsion = 24155.052808 eV Total energy + Delta-G solvation = -4166.475007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.02767 -41.60598 -39.14817 -37.68512 -37.11382 -34.76021 -33.58513 -32.99206 -31.14337 -30.00346 -29.74349 -27.96344 -24.98019 -23.62706 -22.81828 -22.24812 -22.06331 -21.74578 -20.42834 -19.66649 -18.12632 -17.63659 -17.47396 -17.15786 -16.86967 -15.80706 -15.70001 -15.44978 -15.09806 -14.88310 -14.60589 -14.43194 -14.24710 -13.81269 -13.67391 -13.30653 -13.25136 -13.20978 -13.12072 -12.82704 -12.58067 -12.28674 -11.80669 -11.52655 -11.43898 -11.23766 -11.06145 -10.94851 -10.92520 -10.79016 -10.16224 -10.01080 -9.80231 -9.55216 -9.37300 -9.29275 -9.06862 -8.78540 -8.23489 -7.13595 -5.89914 -3.19863 0.86434 0.94943 2.59801 2.86454 3.32764 3.33452 3.38706 3.40334 3.42344 3.85374 4.18461 4.31984 4.34569 4.52597 4.56577 4.72715 4.80106 4.93685 5.02859 5.14661 5.26840 5.35417 5.40038 5.44473 5.46095 5.53777 5.60261 5.67207 5.81453 5.82032 5.89013 5.92211 6.00101 6.05226 6.11261 6.30055 6.31009 6.47732 6.52029 6.69436 6.76318 6.85768 6.91142 7.57961 7.72856 8.26675 8.35746 9.39328 9.92623 10.28897 11.31789 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.002815 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.848927 B = 9944.648134 C =10638.265126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.194 3.806 11 H 0.056 0.944 12 C 0.119 3.881 13 N -0.705 5.705 14 C 0.495 3.505 15 O -0.533 6.533 16 C 0.063 3.937 17 H 0.148 0.852 18 C -0.099 4.099 19 C -0.145 4.145 20 C -0.101 4.101 21 C 0.066 3.934 22 F -0.140 7.140 23 C -0.118 4.118 24 C -0.105 4.105 25 C 0.107 3.893 26 O -0.270 6.270 27 C -0.160 4.160 28 C -0.196 4.196 29 C -0.155 4.155 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 -12.589 11.352 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.083 3.917 11 H 0.074 0.926 12 C -0.005 4.005 13 N -0.358 5.358 14 C 0.279 3.721 15 O -0.409 6.409 16 C 0.003 3.997 17 H 0.166 0.834 18 C -0.136 4.136 19 C -0.146 4.146 20 C -0.120 4.120 21 C 0.046 3.954 22 F -0.118 7.118 23 C -0.136 4.136 24 C -0.124 4.124 25 C 0.062 3.938 26 O -0.182 6.182 27 C -0.182 4.182 28 C -0.234 4.234 29 C -0.192 4.192 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.938 -13.220 11.030 17.326 hybrid contribution 0.508 1.395 -0.070 1.486 sum 2.446 -11.826 10.960 16.308 Atomic orbital electron populations 1.69662 1.05058 1.25675 1.57175 1.24721 0.95435 0.97592 1.02753 0.86197 0.78830 0.84351 0.77247 1.20569 1.21898 1.21887 1.19195 0.90859 0.83781 1.43105 0.91060 1.42474 1.05828 0.99403 1.88111 1.20052 0.94271 0.86057 0.91314 0.92644 1.21638 0.98733 0.97645 0.82486 1.45890 1.50260 1.21710 1.17983 1.20670 0.79275 0.85221 0.86982 1.90715 1.56030 1.22302 1.71896 1.23383 0.92094 0.92902 0.91307 0.83422 1.21818 0.99213 0.94516 0.98030 1.20514 0.95333 0.96619 1.02115 1.20165 1.00145 0.93010 0.98711 1.17349 0.88350 0.91483 0.98197 1.91492 1.66185 1.78820 1.75332 1.20829 0.92077 1.00971 0.99768 1.20080 1.01203 0.90585 1.00509 1.19682 0.90128 0.91100 0.92898 1.87097 1.30591 1.37927 1.62565 1.23022 0.92224 1.03164 0.99767 1.22963 0.97217 0.99842 1.03369 1.22781 1.03308 0.94033 0.99127 0.93465 0.78039 0.91603 0.91547 0.75182 0.87864 0.87243 0.84344 0.83887 0.84226 0.89128 0.89544 0.90067 0.90195 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.71 13.06 55.49 0.72 -24.98 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -5.76 8.63 -15.06 -0.13 -5.89 16 8 H 0.07 1.70 6.91 -52.49 -0.36 1.33 16 9 N -0.72 -15.42 4.54 -53.42 -0.24 -15.67 16 10 C 0.19 3.36 2.70 -67.93 -0.18 3.18 16 11 H 0.06 0.97 7.84 -51.93 -0.41 0.56 16 12 C 0.12 1.91 5.22 -4.04 -0.02 1.89 16 13 N -0.71 -10.60 5.31 -60.29 -0.32 -10.92 16 14 C 0.49 7.73 7.04 -10.99 -0.08 7.65 16 15 O -0.53 -10.31 16.49 -13.51 -0.22 -10.53 16 16 C 0.06 0.79 4.10 -26.99 -0.11 0.68 16 17 H 0.15 1.53 8.14 -51.93 -0.42 1.11 16 18 C -0.10 -0.99 6.64 -26.52 -0.18 -1.17 16 19 C -0.14 -1.69 6.26 -104.10 -0.65 -2.34 16 20 C -0.10 -1.09 10.01 -39.65 -0.40 -1.48 16 21 C 0.07 0.72 7.31 -39.39 -0.29 0.43 16 22 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 23 C -0.12 -1.18 10.00 -39.61 -0.40 -1.57 16 24 C -0.11 -1.18 10.06 -39.31 -0.40 -1.57 16 25 C 0.11 1.40 6.87 -38.97 -0.27 1.14 16 26 O -0.27 -3.84 10.46 -40.87 -0.43 -4.27 16 27 C -0.16 -2.66 5.36 -90.63 -0.49 -3.15 16 28 C -0.20 -2.85 10.18 -26.70 -0.27 -3.13 16 29 C -0.16 -2.65 9.78 -26.69 -0.26 -2.91 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 9.14 7.80 -40.82 -0.32 8.82 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.41 5.98 8.14 -40.82 -0.33 5.65 16 35 H 0.10 0.97 7.85 -51.93 -0.41 0.56 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 41 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.10 2.00 6.23 -51.93 -0.32 1.68 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -30.13 375.93 -9.95 -40.08 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -5.93 Total: 15.01 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -4.21 Total: -8.57 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.16 Total: -51.57 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.65 Total: -14.80 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.13 -9.95 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566722897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.742 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds