Wall clock time and date at job start Tue Mar 31 2020 18:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00107 * 2 1 4 4 H 1.48502 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47172 * 299.99857 * 3 2 1 6 6 H 1.48495 * 109.47215 * 60.00004 * 3 2 1 7 7 C 1.38815 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00091 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47060 * 35.00486 * 10 9 7 12 12 C 1.53005 * 109.46831 * 154.99889 * 10 9 7 13 13 N 1.46501 * 109.47085 * 305.00177 * 12 10 9 14 14 C 1.34776 * 119.99681 * 180.02562 * 13 12 10 15 15 O 1.21280 * 119.99923 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00252 * 179.97438 * 14 13 12 17 17 H 1.09004 * 110.66421 * 55.70237 * 16 14 13 18 18 C 1.54705 * 110.74964 * 292.49016 * 16 14 13 19 19 C 1.51653 * 101.92975 * 266.96389 * 18 16 14 20 20 C 1.37754 * 132.15009 * 164.57863 * 19 18 16 21 21 C 1.38528 * 119.96311 * 180.34850 * 20 19 18 22 22 F 1.35098 * 120.14447 * 180.02562 * 21 20 19 23 23 C 1.38481 * 119.71487 * 0.05728 * 21 20 19 24 24 C 1.37928 * 120.31907 * 359.78231 * 23 21 20 25 25 C 1.38855 * 107.04766 * 344.61569 * 19 18 16 26 26 O 1.36638 * 111.28695 * 358.89630 * 25 19 18 27 27 C 1.52997 * 109.47289 * 275.00217 * 10 9 7 28 28 C 1.52993 * 117.50097 * 128.74666 * 27 10 9 29 29 C 1.52998 * 117.49862 * 60.08486 * 27 10 9 30 30 H 0.97000 * 120.00432 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00350 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46872 * 65.00853 * 12 10 9 33 33 H 1.09001 * 109.46455 * 185.00313 * 12 10 9 34 34 H 0.96998 * 120.00018 * 0.02562 * 13 12 10 35 35 H 1.09000 * 110.93767 * 25.12095 * 18 16 14 36 36 H 1.09000 * 110.93805 * 148.76956 * 18 16 14 37 37 H 1.07999 * 120.02113 * 0.36835 * 20 19 18 38 38 H 1.08000 * 119.84110 * 179.79833 * 23 21 20 39 39 H 1.08000 * 119.86393 * 180.02562 * 24 23 21 40 40 H 1.09002 * 115.54867 * 274.41588 * 27 10 9 41 41 H 1.09004 * 117.49769 * 0.02562 * 28 27 10 42 42 H 1.09002 * 117.50139 * 145.01382 * 28 27 10 43 43 H 1.09003 * 117.49629 * 214.97732 * 29 27 10 44 44 H 1.08991 * 117.50070 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5506 0.5901 12 6 1.1807 -4.7522 0.6102 13 7 0.7341 -4.3354 1.9418 14 6 -0.0549 -5.1476 2.6727 15 8 -0.3948 -6.2236 2.2282 16 6 -0.5139 -4.7193 4.0427 17 1 -1.0266 -3.7586 3.9937 18 6 0.6794 -4.6541 5.0250 19 6 0.6474 -6.0358 5.6493 20 6 1.5739 -6.7380 6.3883 21 6 1.2771 -8.0146 6.8369 22 9 2.1828 -8.7064 7.5624 23 6 0.0484 -8.5790 6.5379 24 6 -0.8805 -7.8745 5.8007 25 6 -0.5905 -6.5891 5.3501 26 8 -1.3619 -5.7197 4.6317 27 6 2.4220 -4.0357 -1.4364 28 6 3.8821 -4.3892 -1.7256 29 6 3.3028 -3.0622 -2.2221 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 0.3133 -4.9201 -0.0280 33 1 1.7557 -5.6746 0.6920 34 1 1.0063 -3.4750 2.2974 35 1 1.6152 -4.4897 4.4908 36 1 0.5222 -3.8820 5.7782 37 1 2.5309 -6.2935 6.6182 38 1 -0.1838 -9.5754 6.8838 39 1 -1.8366 -8.3216 5.5721 40 1 1.6541 -4.5775 -1.9886 41 1 4.5835 -4.3524 -0.8920 42 1 4.0749 -5.1635 -2.4682 43 1 3.1147 -2.9640 -3.2913 44 1 3.6227 -2.1518 -1.7155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566722897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:35 Heat of formation + Delta-G solvation = -62.882313 kcal Electronic energy + Delta-G solvation = -28322.267718 eV Core-core repulsion = 24155.052808 eV Total energy + Delta-G solvation = -4167.214910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.87879 -42.56049 -40.36713 -39.00240 -38.09836 -36.12533 -35.20816 -33.96420 -32.71302 -31.02727 -30.68970 -29.39107 -26.15282 -25.22601 -23.88953 -23.38941 -23.01311 -22.91124 -21.68998 -21.00900 -19.46647 -18.82907 -18.51640 -18.31604 -17.80481 -16.97847 -16.77442 -16.70380 -16.40960 -16.13882 -15.86012 -15.66520 -15.25733 -15.20805 -14.89524 -14.69627 -14.35659 -14.25358 -14.01429 -13.81062 -13.71817 -13.46089 -12.98498 -12.93500 -12.75870 -12.68313 -12.47168 -12.37865 -12.24804 -11.93569 -11.87742 -11.71275 -11.07233 -10.99517 -10.82489 -10.73312 -10.12959 -10.06888 -9.14280 -8.97796 -7.86535 -5.13932 0.02388 0.10720 1.42975 1.50647 1.54176 1.60749 1.84351 2.29076 2.49177 2.59908 3.02478 3.08720 3.30436 3.47990 3.50593 3.63502 3.76871 3.79352 4.00329 4.04285 4.09829 4.17591 4.19884 4.35742 4.40120 4.44907 4.55188 4.60535 4.67153 4.68990 4.81754 4.86101 4.91151 5.01550 5.06688 5.15179 5.17141 5.21212 5.40960 5.42775 5.47466 5.50780 5.65039 5.97235 6.33149 6.49799 7.13006 7.42110 8.12134 8.37932 9.36237 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.002815 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.848927 B = 9944.648134 C =10638.265126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.306 1.306 6 H -0.297 1.297 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.723 5.723 10 C 0.199 3.801 11 H 0.062 0.938 12 C 0.128 3.872 13 N -0.699 5.699 14 C 0.493 3.507 15 O -0.575 6.575 16 C 0.062 3.938 17 H 0.168 0.832 18 C -0.090 4.090 19 C -0.151 4.151 20 C -0.104 4.104 21 C 0.057 3.943 22 F -0.141 7.141 23 C -0.113 4.113 24 C -0.114 4.114 25 C 0.075 3.925 26 O -0.290 6.290 27 C -0.175 4.175 28 C -0.163 4.163 29 C -0.173 4.173 30 H 0.247 0.753 31 H 0.373 0.627 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.416 0.584 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -13.387 12.218 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.260 4.260 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.234 1.234 6 H -0.224 1.224 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.362 5.362 10 C 0.090 3.910 11 H 0.080 0.920 12 C 0.003 3.997 13 N -0.352 5.352 14 C 0.279 3.721 15 O -0.454 6.454 16 C 0.002 3.998 17 H 0.185 0.815 18 C -0.127 4.127 19 C -0.152 4.152 20 C -0.123 4.123 21 C 0.038 3.962 22 F -0.120 7.120 23 C -0.132 4.132 24 C -0.132 4.132 25 C 0.030 3.970 26 O -0.203 6.203 27 C -0.196 4.196 28 C -0.200 4.200 29 C -0.210 4.210 30 H 0.056 0.944 31 H 0.205 0.795 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.253 0.747 35 H 0.130 0.870 36 H 0.155 0.845 37 H 0.176 0.824 38 H 0.187 0.813 39 H 0.169 0.831 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.840 -14.040 11.907 18.805 hybrid contribution -0.013 1.504 -0.353 1.545 sum 3.827 -12.536 11.554 17.472 Atomic orbital electron populations 1.69796 1.06337 1.25494 1.60020 1.25313 0.95997 1.00234 1.04471 0.85316 0.78509 0.81240 0.76138 1.19131 1.23377 1.22426 1.19468 0.91137 0.84463 1.39610 0.90422 1.42575 1.05326 1.00308 1.88002 1.20131 0.94112 0.84608 0.92104 0.92000 1.21487 0.97947 0.97534 0.82695 1.45840 1.50047 1.21747 1.17548 1.21281 0.78359 0.84449 0.87993 1.90687 1.57548 1.24113 1.73095 1.23527 0.93342 0.93102 0.89785 0.81488 1.21878 0.98314 0.94572 0.97910 1.20710 0.94960 0.97307 1.02236 1.20387 1.00750 0.92943 0.98224 1.17547 0.88647 0.91761 0.98255 1.91488 1.66274 1.78865 1.75386 1.21097 0.91383 1.01868 0.98821 1.20358 1.02065 0.90301 1.00503 1.20066 0.91011 0.91939 0.93954 1.87064 1.31603 1.38655 1.62955 1.22942 0.93908 1.03907 0.98864 1.23032 0.95194 0.98303 1.03512 1.22733 1.04726 0.94324 0.99252 0.94409 0.79466 0.93194 0.90402 0.74712 0.87043 0.84497 0.82422 0.81337 0.83145 0.89084 0.88435 0.87768 0.89753 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -54.29 13.06 21.65 0.28 -54.00 16 2 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.96 42.70 29.55 68.60 2.03 44.73 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.31 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.21 -10.23 8.63 84.03 0.73 -9.51 16 8 H 0.08 3.58 6.91 -2.91 -0.02 3.56 16 9 N -0.72 -30.76 4.54 -322.92 -1.47 -32.23 16 10 C 0.20 6.67 2.70 44.99 0.12 6.79 16 11 H 0.06 2.02 7.84 -2.39 -0.02 2.00 16 12 C 0.13 3.99 5.22 86.38 0.45 4.44 16 13 N -0.70 -20.51 5.31 -463.05 -2.46 -22.97 16 14 C 0.49 15.25 7.04 87.66 0.62 15.87 16 15 O -0.57 -22.45 16.49 15.20 0.25 -22.20 16 16 C 0.06 1.50 4.10 30.43 0.12 1.62 16 17 H 0.17 3.28 8.14 -2.39 -0.02 3.26 16 18 C -0.09 -1.64 6.64 30.73 0.20 -1.44 16 19 C -0.15 -3.31 6.26 -19.53 -0.12 -3.43 16 20 C -0.10 -2.05 10.01 22.22 0.22 -1.83 16 21 C 0.06 1.16 7.31 22.40 0.16 1.32 16 22 F -0.14 -2.92 17.27 44.97 0.78 -2.14 16 23 C -0.11 -2.09 10.00 22.25 0.22 -1.87 16 24 C -0.11 -2.46 10.06 22.44 0.23 -2.24 16 25 C 0.08 1.92 6.87 22.67 0.16 2.08 16 26 O -0.29 -8.22 10.46 -82.72 -0.87 -9.09 16 27 C -0.17 -5.54 5.36 -10.80 -0.06 -5.59 16 28 C -0.16 -4.23 10.18 30.62 0.31 -3.92 16 29 C -0.17 -5.62 9.78 30.62 0.30 -5.32 16 30 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.37 17.84 7.80 -92.71 -0.72 17.11 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.42 11.64 8.14 -92.71 -0.75 10.88 16 35 H 0.11 1.84 7.85 -2.39 -0.02 1.82 16 36 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.09 2.89 8.11 -2.39 -0.02 2.87 16 41 H 0.10 2.36 8.05 -2.38 -0.02 2.34 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.08 3.07 6.23 -2.39 -0.01 3.05 16 Total: -1.00 -65.14 375.93 2.25 -62.89 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -0.43 Total: 41.07 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.13 Total: -6.06 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -3.64 Total: -109.20 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.61 Total: -31.29 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -65.14 2.25 -62.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566722897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.007 kcal (2) G-P(sol) polarization free energy of solvation -65.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds