Wall clock time and date at job start Tue Mar 31 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00098 * 2 1 4 4 H 1.48491 * 109.47126 * 269.99781 * 3 2 1 5 5 H 1.48496 * 109.47163 * 30.00301 * 3 2 1 6 6 H 1.48497 * 109.46928 * 150.00019 * 3 2 1 7 7 C 1.38809 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99718 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00506 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00230 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47196 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.91125 * 308.90494 * 11 10 9 13 13 C 1.55149 * 111.00685 * 184.99874 * 11 10 9 14 14 C 1.54322 * 103.10483 * 206.51134 * 13 11 10 15 15 N 1.47024 * 107.26892 * 22.10861 * 14 13 11 16 16 C 1.34772 * 125.64702 * 181.02593 * 15 14 13 17 17 O 1.21638 * 119.99913 * 174.88184 * 16 15 14 18 18 C 1.47187 * 120.00047 * 354.87601 * 16 15 14 19 19 C 1.35620 * 123.18953 * 6.12622 * 18 16 15 20 20 S 1.70269 * 110.84209 * 179.89289 * 19 18 16 21 21 C 1.75588 * 92.62708 * 0.31805 * 20 19 18 22 22 C 1.34014 * 110.60198 * 359.80968 * 21 20 19 23 23 C 1.52006 * 123.46390 * 180.02562 * 22 21 20 24 24 C 1.53033 * 108.76766 * 342.90256 * 23 22 21 25 25 C 1.53162 * 109.22403 * 50.61391 * 24 23 22 26 26 C 1.51610 * 125.04911 * 179.84576 * 21 20 19 27 27 C 1.47423 * 108.70179 * 1.05486 * 15 14 13 28 28 H 0.97001 * 119.99517 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99662 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47353 * 60.00250 * 10 9 7 31 31 H 1.09000 * 109.47697 * 300.00117 * 10 9 7 32 32 H 1.09005 * 110.71675 * 88.06017 * 13 11 10 33 33 H 1.08998 * 110.71983 * 324.96888 * 13 11 10 34 34 H 1.08999 * 109.87918 * 141.52134 * 14 13 11 35 35 H 1.09002 * 109.88508 * 262.53374 * 14 13 11 36 36 H 1.07995 * 124.57736 * 0.02562 * 19 18 16 37 37 H 1.09002 * 109.58861 * 102.66431 * 23 22 21 38 38 H 1.08996 * 109.59257 * 223.09623 * 23 22 21 39 39 H 1.08999 * 109.50590 * 290.69497 * 24 23 22 40 40 H 1.09002 * 109.56085 * 170.57038 * 24 23 22 41 41 H 1.08991 * 109.54556 * 169.76670 * 25 24 23 42 42 H 1.08997 * 109.61337 * 49.54610 * 25 24 23 43 43 H 1.08999 * 109.59813 * 283.06624 * 26 21 20 44 44 H 1.09002 * 109.59800 * 43.37592 * 26 21 20 45 45 H 1.09002 * 110.36762 * 94.71760 * 27 15 14 46 46 H 1.09002 * 110.37017 * 216.92449 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 1 0.3251 -4.6997 0.7928 13 6 1.7990 -6.1801 0.1263 14 6 0.8280 -7.1672 -0.5550 15 7 -0.0318 -6.3834 -1.4538 16 6 -1.0265 -6.8771 -2.2175 17 8 -1.7359 -6.1220 -2.8548 18 6 -1.2542 -8.3299 -2.2806 19 6 -0.5842 -9.2206 -1.5080 20 16 -1.0954 -10.8114 -1.8352 21 6 -2.2404 -10.2786 -3.0552 22 6 -2.2113 -8.9445 -3.1785 23 6 -3.0873 -8.1735 -4.1526 24 6 -3.6326 -9.1464 -5.2005 25 6 -4.2558 -10.3531 -4.4924 26 6 -3.1417 -11.1928 -3.8617 27 6 0.3747 -4.9682 -1.3817 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 2.6846 -3.7146 0.8895 31 1 2.6847 -3.7146 -0.8905 32 1 1.9450 -6.4438 1.1739 33 1 2.7534 -6.1528 -0.3996 34 1 1.3904 -7.9037 -1.1289 35 1 0.2209 -7.6694 0.1982 36 1 0.1701 -8.9563 -0.7816 37 1 -3.9165 -7.7146 -3.6140 38 1 -2.4956 -7.4010 -4.6437 39 1 -2.8192 -9.4819 -5.8438 40 1 -4.3908 -8.6463 -5.8032 41 1 -4.8032 -10.9575 -5.2156 42 1 -4.9374 -10.0090 -3.7145 43 1 -2.5618 -11.6784 -4.6466 44 1 -3.5757 -11.9487 -3.2071 45 1 1.0786 -4.7345 -2.1805 46 1 -0.4986 -4.3189 -1.4448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567149827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:12 Heat of formation + Delta-G solvation = -15.077336 kcal Electronic energy + Delta-G solvation = -26143.362729 eV Core-core repulsion = 22544.433974 eV Total energy + Delta-G solvation = -3598.928754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52089 -39.76902 -38.59655 -36.60570 -35.95209 -33.92275 -32.08548 -31.72956 -30.71948 -29.56620 -27.41661 -26.09897 -24.57983 -24.36532 -23.40304 -22.37053 -21.44654 -20.63230 -19.29738 -19.12329 -18.22758 -17.78951 -17.28578 -16.61710 -16.32495 -16.07212 -15.59725 -15.39080 -15.27023 -15.03286 -14.82072 -14.67103 -14.56260 -14.24732 -13.92904 -13.77060 -13.64651 -13.56690 -13.30913 -13.09491 -12.78769 -12.67883 -12.53177 -12.39454 -12.18837 -12.11222 -11.86887 -11.75769 -11.66073 -11.64373 -11.56702 -11.28191 -10.97493 -10.87523 -9.82820 -9.59963 -9.22103 -9.01952 -7.96148 -5.25830 -0.24232 0.57814 0.88812 0.92398 1.45690 1.48331 1.56605 1.87664 2.21896 2.54907 3.33517 3.40041 3.51900 3.62162 3.73253 3.84138 3.94959 3.99474 4.05756 4.17240 4.17851 4.24367 4.31602 4.38363 4.51858 4.56629 4.59506 4.61334 4.68554 4.75947 4.80803 4.85300 4.94466 4.97217 4.99322 5.01824 5.07436 5.15626 5.18876 5.24229 5.32297 5.38344 5.41664 5.48818 5.57212 6.25439 6.42697 7.04264 7.31229 8.07541 8.28949 9.27675 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.002377 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.777346 B =11775.654904 C =12883.715583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.164 3.836 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.112 4.112 14 C 0.087 3.913 15 N -0.613 5.613 16 C 0.575 3.425 17 O -0.583 6.583 18 C -0.174 4.174 19 C -0.230 4.230 20 S 0.246 5.754 21 C -0.211 4.211 22 C -0.084 4.084 23 C -0.052 4.052 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.044 4.044 27 C 0.121 3.879 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.038 0.962 31 H 0.025 0.975 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.211 0.789 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -32.466 -4.372 32.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.038 3.962 11 C -0.116 4.116 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.034 4.034 15 N -0.345 5.345 16 C 0.365 3.635 17 O -0.465 6.465 18 C -0.192 4.192 19 C -0.367 4.367 20 S 0.515 5.485 21 C -0.328 4.328 22 C -0.094 4.094 23 C -0.091 4.091 24 C -0.155 4.155 25 C -0.152 4.152 26 C -0.083 4.083 27 C -0.002 4.002 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.227 0.773 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.079 0.921 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.649 -33.464 -4.128 33.758 hybrid contribution -0.549 3.483 -0.576 3.572 sum -2.198 -29.982 -4.704 30.428 Atomic orbital electron populations 1.69846 1.06841 1.26056 1.59650 1.25649 0.96385 1.01430 1.03810 0.85097 0.77803 0.79254 0.77364 1.21608 1.22310 1.18905 1.19675 0.91646 0.85255 1.40956 0.90143 1.42654 1.05595 1.01489 1.89460 1.20766 0.93263 0.83645 0.98555 1.22440 0.97864 0.96147 0.95139 0.90655 1.22725 0.98135 0.90730 1.03437 1.22751 0.92622 0.95129 0.92882 1.48447 1.33377 1.09386 1.43294 1.17932 0.78946 0.88140 0.78457 1.90761 1.47944 1.61128 1.46698 1.19955 1.03476 0.92135 1.03616 1.26775 1.05632 0.99302 1.04998 1.82581 1.31375 1.02897 1.31602 1.25107 1.05791 0.96722 1.05150 1.20459 0.97650 0.93044 0.98247 1.20389 0.96947 0.96812 0.94991 1.21604 1.00718 0.96171 0.96981 1.21582 0.97159 0.96284 1.00190 1.20470 0.94432 0.95433 0.98001 1.22133 0.98225 0.81564 0.98310 0.94107 0.79773 0.94377 0.95667 0.86794 0.88786 0.88168 0.88779 0.77285 0.92212 0.92655 0.91402 0.90640 0.88675 0.92202 0.88692 0.88456 0.92094 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.03 13.06 21.65 0.28 -61.75 16 2 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 3 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.75 -38.90 5.55 -343.45 -1.91 -40.80 16 10 C 0.16 6.31 5.72 86.38 0.49 6.80 16 11 C -0.10 -2.98 3.06 -9.33 -0.03 -3.01 16 12 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 13 C -0.11 -2.13 6.41 31.78 0.20 -1.93 16 14 C 0.09 1.62 4.92 86.73 0.43 2.05 16 15 N -0.61 -18.45 3.33 -815.50 -2.71 -21.16 16 16 C 0.58 19.80 7.82 86.59 0.68 20.48 16 17 O -0.58 -25.33 14.94 -4.15 -0.06 -25.40 16 18 C -0.17 -4.62 5.97 -19.82 -0.12 -4.74 16 19 C -0.23 -4.11 9.39 67.21 0.63 -3.48 16 20 S 0.25 3.22 22.99 -56.49 -1.30 1.92 16 21 C -0.21 -3.73 6.32 25.01 0.16 -3.57 16 22 C -0.08 -2.08 5.95 -18.70 -0.11 -2.20 16 23 C -0.05 -1.36 5.00 30.28 0.15 -1.21 16 24 C -0.12 -2.05 5.90 30.66 0.18 -1.87 16 25 C -0.11 -1.43 5.93 30.69 0.18 -1.25 16 26 C -0.04 -0.51 6.26 30.18 0.19 -0.32 16 27 C 0.12 4.31 6.37 86.93 0.55 4.86 16 28 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.37 20.99 7.67 -92.71 -0.71 20.28 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 0.97 7.97 -2.39 -0.02 0.95 16 32 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.09 1.60 8.04 -2.39 -0.02 1.58 16 34 H 0.10 1.35 6.81 -2.39 -0.02 1.34 16 35 H 0.09 1.37 6.84 -2.39 -0.02 1.35 16 36 H 0.21 2.64 3.65 -2.91 -0.01 2.63 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.76 7.11 -2.39 -0.02 1.74 16 39 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 2.26 7.91 -2.39 -0.02 2.24 16 46 H 0.04 1.82 7.99 -2.39 -0.02 1.80 16 Total: -1.00 -78.76 372.72 1.51 -77.25 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.29 Total: 27.39 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.90 Total: -6.69 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -4.34 Total: -123.71 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.30 Total: 1.92 kcal Total: -78.76 1.51 -77.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567149827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.168 kcal (2) G-P(sol) polarization free energy of solvation -78.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds