Wall clock time and date at job start Tue Mar 31 2020 17:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42098 * 108.57753 * 2 1 4 4 O 1.42095 * 108.57792 * 228.97471 * 2 1 3 5 5 C 1.81399 * 101.91994 * 114.48582 * 2 1 3 6 6 C 1.53000 * 109.47070 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.47109 * 179.97438 * 6 5 2 8 8 C 1.50698 * 109.46988 * 179.97438 * 7 6 5 9 9 O 1.21273 * 120.00259 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99654 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99714 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47004 * 180.02562 * 11 10 8 13 13 O 1.42904 * 110.64058 * 298.31066 * 12 11 10 14 14 C 1.55156 * 110.72286 * 174.97843 * 12 11 10 15 15 C 1.54903 * 101.58351 * 206.13369 * 14 12 11 16 16 N 1.47421 * 104.83315 * 37.00756 * 15 14 12 17 17 C 1.36939 * 125.64858 * 155.85141 * 16 15 14 18 18 H 1.07996 * 119.99982 * 353.90110 * 17 16 15 19 19 C 1.38817 * 119.99954 * 173.89711 * 17 16 15 20 20 N 1.31613 * 119.99986 * 6.83731 * 19 17 16 21 21 Si 1.86797 * 119.99814 * 186.83100 * 19 17 16 22 22 H 1.48505 * 109.47109 * 94.99070 * 21 19 17 23 23 H 1.48503 * 109.46980 * 214.98572 * 21 19 17 24 24 H 1.48496 * 109.47373 * 334.98809 * 21 19 17 25 25 C 1.47020 * 108.70220 * 335.86868 * 16 15 14 26 26 H 1.08995 * 109.47457 * 305.51601 * 1 2 3 27 27 H 1.09007 * 109.47173 * 65.51612 * 1 2 3 28 28 H 1.09004 * 109.47056 * 185.50983 * 1 2 3 29 29 H 1.09006 * 109.47052 * 60.00435 * 5 2 1 30 30 H 1.08995 * 109.47128 * 300.00169 * 5 2 1 31 31 H 1.09006 * 109.46591 * 60.00442 * 6 5 2 32 32 H 1.08995 * 109.47520 * 300.00218 * 6 5 2 33 33 H 1.09006 * 109.46841 * 60.00830 * 7 6 5 34 34 H 1.08995 * 109.47299 * 300.00588 * 7 6 5 35 35 H 0.97002 * 120.00465 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.47159 * 60.00196 * 11 10 8 37 37 H 1.08995 * 109.47361 * 300.00333 * 11 10 8 38 38 H 0.96699 * 113.99785 * 61.68887 * 13 12 11 39 39 H 1.09001 * 111.00881 * 88.05545 * 14 12 11 40 40 H 1.09003 * 111.00263 * 324.20864 * 14 12 11 41 41 H 1.09002 * 110.36741 * 278.16597 * 15 14 12 42 42 H 1.09003 * 110.36584 * 155.84338 * 15 14 12 43 43 H 0.97001 * 120.00020 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.87818 * 120.47590 * 25 16 15 45 45 H 1.08994 * 109.88526 * 241.48611 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8195 1.7980 7 6 4.0214 -1.4394 3.1606 8 6 5.5154 -1.5226 3.3402 9 8 6.2545 -1.1249 2.4649 10 7 6.0300 -2.0382 4.4742 11 6 7.4823 -2.1186 4.6491 12 6 7.7983 -2.7385 6.0117 13 8 7.2825 -1.9249 7.0672 14 6 9.3261 -2.9537 6.1759 15 6 9.3681 -4.1266 7.1868 16 7 8.2318 -4.9881 6.8128 17 6 8.1225 -6.3264 7.0817 18 1 8.9526 -6.8581 7.5226 19 6 6.9446 -6.9995 6.7875 20 7 5.9835 -6.3870 6.1292 21 14 6.7237 -8.7745 7.3259 22 1 6.0048 -8.8120 8.6248 23 1 5.9358 -9.5077 6.3028 24 1 8.0548 -9.4148 7.4783 25 6 7.2356 -4.1726 6.1029 26 1 -0.3634 0.5970 0.8364 27 1 -0.3634 0.4259 -0.9353 28 1 -0.3633 -1.0230 0.0987 29 1 1.7610 -1.7370 1.6665 30 1 1.7610 -0.1171 2.4042 31 1 4.1334 0.1817 1.7466 32 1 4.1328 -1.4383 1.0090 33 1 3.5934 -2.4406 3.2123 34 1 3.5941 -0.8203 3.9493 35 1 5.4388 -2.3560 5.1746 36 1 7.9106 -1.1175 4.5969 37 1 7.9095 -2.7380 3.8606 38 1 6.3209 -1.8237 7.0516 39 1 9.8038 -2.0650 6.5885 40 1 9.7847 -3.2376 5.2287 41 1 9.2440 -3.7553 8.2041 42 1 10.3060 -4.6742 7.0937 43 1 5.1605 -6.8575 5.9233 44 1 7.0751 -4.5721 5.1015 45 1 6.2963 -4.1702 6.6559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569758706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:53 Heat of formation + Delta-G solvation = -135.335098 kcal Electronic energy + Delta-G solvation = -26975.320313 eV Core-core repulsion = 22928.034777 eV Total energy + Delta-G solvation = -4047.285537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.85723 -38.45522 -37.27971 -36.33669 -35.19855 -34.83215 -33.99982 -32.27063 -30.20654 -29.83874 -28.73896 -27.67528 -25.73108 -23.79835 -22.39529 -20.70149 -19.98469 -19.82076 -19.19506 -17.76605 -16.96044 -16.70429 -16.69045 -16.49111 -16.04953 -15.82184 -15.48754 -14.77852 -14.52078 -14.06317 -13.98038 -13.80167 -13.70305 -13.63703 -13.28804 -12.99904 -12.86659 -12.56101 -12.36908 -12.28563 -12.28121 -12.15696 -11.98826 -11.63489 -11.38630 -11.24489 -11.17800 -10.88682 -10.84815 -10.69583 -10.50362 -10.30867 -10.08132 -9.85004 -9.67929 -9.33325 -8.90528 -8.69593 -6.91284 -5.82712 -3.13214 -0.39170 2.38887 2.73443 3.15281 3.34905 3.39520 3.40816 3.42068 3.63456 4.23120 4.27502 4.35463 4.42008 4.54167 4.60090 4.64020 4.89853 4.99839 5.07541 5.16049 5.21331 5.30001 5.39773 5.43933 5.45713 5.59609 5.68428 5.84699 5.88596 5.97786 6.14162 6.27120 6.40701 6.53955 6.61579 6.87253 7.24756 7.38021 7.58388 7.66821 8.03427 8.14495 8.31569 9.12179 9.73129 10.39335 11.30343 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.002396 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.601913 B =11681.218476 C =13056.416913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.422 3.578 3 O -0.939 6.939 4 O -0.937 6.937 5 C -0.612 4.612 6 C -0.097 4.097 7 C -0.134 4.134 8 C 0.512 3.488 9 O -0.545 6.545 10 N -0.721 5.721 11 C 0.109 3.891 12 C 0.085 3.915 13 O -0.550 6.550 14 C -0.115 4.115 15 C 0.136 3.864 16 N -0.604 5.604 17 C -0.225 4.225 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.163 3.837 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.367 0.633 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.026 0.974 42 H 0.041 0.959 43 H 0.251 0.749 44 H 0.052 0.948 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.861 13.276 -6.786 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.604 3.396 3 O -0.936 6.936 4 O -0.934 6.934 5 C -0.741 4.741 6 C -0.136 4.136 7 C -0.175 4.175 8 C 0.298 3.702 9 O -0.423 6.423 10 N -0.373 5.373 11 C -0.015 4.015 12 C 0.044 3.956 13 O -0.355 6.355 14 C -0.154 4.154 15 C 0.010 3.990 16 N -0.331 5.331 17 C -0.353 4.353 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.037 3.963 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.214 0.786 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.043 0.957 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.261 13.715 -7.952 18.885 hybrid contribution -1.844 -1.551 1.168 2.678 sum -12.105 12.164 -6.784 18.453 Atomic orbital electron populations 1.30301 1.27171 1.11556 1.11719 1.07821 0.78106 0.75858 0.77825 1.93607 1.78893 1.34575 1.86545 1.93618 1.78823 1.66967 1.54005 1.30367 1.06368 1.14191 1.23132 1.21051 0.89713 1.04051 0.98750 1.21616 0.93286 1.04003 0.98619 1.20551 0.90739 0.77195 0.81731 1.90706 1.61713 1.48323 1.41563 1.45937 1.08371 1.63303 1.19675 1.21955 0.80284 1.01317 0.97970 1.22917 0.96168 0.92405 0.84132 1.86515 1.25567 1.71943 1.51518 1.22706 0.92417 0.99361 1.00877 1.21563 0.91791 0.90314 0.95344 1.44379 1.17575 1.05212 1.65892 1.19110 0.98426 0.82924 1.34860 0.90252 1.24797 0.96373 0.98638 1.00695 1.69917 1.07123 1.36194 1.44007 0.86081 0.77685 0.84024 0.77898 1.21645 1.21785 1.20610 1.21787 0.92241 0.84488 0.97741 0.85389 0.85333 0.85315 0.84655 0.84808 0.89361 0.89214 0.88043 0.88466 0.76289 0.91276 0.90527 0.78621 0.90904 0.90205 0.95671 0.94055 0.93841 0.92980 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.95 10.62 101.05 1.07 -0.88 16 2 S 2.42 16.54 5.36 -107.50 -0.58 15.97 16 3 O -0.94 -10.25 18.10 -57.83 -1.05 -11.30 16 4 O -0.94 -10.61 18.10 -57.83 -1.05 -11.65 16 5 C -0.61 -3.16 5.81 37.16 0.22 -2.95 16 6 C -0.10 -0.92 4.51 -26.73 -0.12 -1.04 16 7 C -0.13 -1.25 5.70 -27.88 -0.16 -1.41 16 8 C 0.51 7.15 7.83 -10.98 -0.09 7.06 16 9 O -0.55 -9.69 15.98 5.56 0.09 -9.60 16 10 N -0.72 -9.93 5.17 -60.29 -0.31 -10.24 16 11 C 0.11 1.72 4.73 -4.04 -0.02 1.70 16 12 C 0.09 1.49 0.92 -88.79 -0.08 1.41 16 13 O -0.55 -9.14 13.10 -35.23 -0.46 -9.60 16 14 C -0.11 -1.99 6.26 -24.59 -0.15 -2.14 16 15 C 0.14 2.80 7.23 -2.53 -0.02 2.78 16 16 N -0.60 -14.99 3.39 -170.08 -0.58 -15.56 16 17 C -0.23 -6.13 10.26 -15.06 -0.15 -6.28 16 18 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 19 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 20 N -0.92 -25.60 10.36 55.49 0.57 -25.03 16 21 Si 0.91 21.55 29.56 -169.99 -5.02 16.52 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.16 3.62 4.16 -3.07 -0.01 3.61 16 26 H 0.13 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.13 0.18 8.14 -51.92 -0.42 -0.25 16 29 H 0.14 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.91 8.10 -51.93 -0.42 0.48 16 32 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 4.88 7.38 -40.82 -0.30 4.58 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 38 H 0.37 4.83 8.12 45.56 0.37 5.20 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.31 8.04 -51.93 -0.42 0.90 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.25 6.77 8.31 -40.82 -0.34 6.44 16 44 H 0.05 1.29 7.23 -51.93 -0.38 0.92 16 45 H 0.05 1.18 7.28 -51.93 -0.38 0.81 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -39.27 382.03 -8.80 -48.07 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.56 Total: 5.16 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 0.39 Total: 1.51 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.31 Total: -50.83 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -2.47 Total: -42.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 16.54 SS G_CDS: -0.58 Total: 15.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.27 -8.80 -48.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569758706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.266 kcal (2) G-P(sol) polarization free energy of solvation -39.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds