Wall clock time and date at job start Tue Mar 31 2020 17:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42098 * 108.57753 * 2 1 4 4 O 1.42095 * 108.57792 * 228.97471 * 2 1 3 5 5 C 1.81399 * 101.91994 * 114.48582 * 2 1 3 6 6 C 1.53000 * 109.47070 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.47109 * 179.97438 * 6 5 2 8 8 C 1.50698 * 109.46988 * 179.97438 * 7 6 5 9 9 O 1.21273 * 120.00259 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99654 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99714 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47004 * 180.02562 * 11 10 8 13 13 O 1.42904 * 110.64058 * 298.31066 * 12 11 10 14 14 C 1.55156 * 110.72286 * 174.97843 * 12 11 10 15 15 C 1.54903 * 101.58351 * 206.13369 * 14 12 11 16 16 N 1.47421 * 104.83315 * 37.00756 * 15 14 12 17 17 C 1.36939 * 125.64858 * 155.85141 * 16 15 14 18 18 H 1.07996 * 119.99982 * 353.90110 * 17 16 15 19 19 C 1.38817 * 119.99954 * 173.89711 * 17 16 15 20 20 N 1.31613 * 119.99986 * 6.83731 * 19 17 16 21 21 Si 1.86797 * 119.99814 * 186.83100 * 19 17 16 22 22 H 1.48505 * 109.47109 * 94.99070 * 21 19 17 23 23 H 1.48503 * 109.46980 * 214.98572 * 21 19 17 24 24 H 1.48496 * 109.47373 * 334.98809 * 21 19 17 25 25 C 1.47020 * 108.70220 * 335.86868 * 16 15 14 26 26 H 1.08995 * 109.47457 * 305.51601 * 1 2 3 27 27 H 1.09007 * 109.47173 * 65.51612 * 1 2 3 28 28 H 1.09004 * 109.47056 * 185.50983 * 1 2 3 29 29 H 1.09006 * 109.47052 * 60.00435 * 5 2 1 30 30 H 1.08995 * 109.47128 * 300.00169 * 5 2 1 31 31 H 1.09006 * 109.46591 * 60.00442 * 6 5 2 32 32 H 1.08995 * 109.47520 * 300.00218 * 6 5 2 33 33 H 1.09006 * 109.46841 * 60.00830 * 7 6 5 34 34 H 1.08995 * 109.47299 * 300.00588 * 7 6 5 35 35 H 0.97002 * 120.00465 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.47159 * 60.00196 * 11 10 8 37 37 H 1.08995 * 109.47361 * 300.00333 * 11 10 8 38 38 H 0.96699 * 113.99785 * 61.68887 * 13 12 11 39 39 H 1.09001 * 111.00881 * 88.05545 * 14 12 11 40 40 H 1.09003 * 111.00263 * 324.20864 * 14 12 11 41 41 H 1.09002 * 110.36741 * 278.16597 * 15 14 12 42 42 H 1.09003 * 110.36584 * 155.84338 * 15 14 12 43 43 H 0.97001 * 120.00020 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.87818 * 120.47590 * 25 16 15 45 45 H 1.08994 * 109.88526 * 241.48611 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8195 1.7980 7 6 4.0214 -1.4394 3.1606 8 6 5.5154 -1.5226 3.3402 9 8 6.2545 -1.1249 2.4649 10 7 6.0300 -2.0382 4.4742 11 6 7.4823 -2.1186 4.6491 12 6 7.7983 -2.7385 6.0117 13 8 7.2825 -1.9249 7.0672 14 6 9.3261 -2.9537 6.1759 15 6 9.3681 -4.1266 7.1868 16 7 8.2318 -4.9881 6.8128 17 6 8.1225 -6.3264 7.0817 18 1 8.9526 -6.8581 7.5226 19 6 6.9446 -6.9995 6.7875 20 7 5.9835 -6.3870 6.1292 21 14 6.7237 -8.7745 7.3259 22 1 6.0048 -8.8120 8.6248 23 1 5.9358 -9.5077 6.3028 24 1 8.0548 -9.4148 7.4783 25 6 7.2356 -4.1726 6.1029 26 1 -0.3634 0.5970 0.8364 27 1 -0.3634 0.4259 -0.9353 28 1 -0.3633 -1.0230 0.0987 29 1 1.7610 -1.7370 1.6665 30 1 1.7610 -0.1171 2.4042 31 1 4.1334 0.1817 1.7466 32 1 4.1328 -1.4383 1.0090 33 1 3.5934 -2.4406 3.2123 34 1 3.5941 -0.8203 3.9493 35 1 5.4388 -2.3560 5.1746 36 1 7.9106 -1.1175 4.5969 37 1 7.9095 -2.7380 3.8606 38 1 6.3209 -1.8237 7.0516 39 1 9.8038 -2.0650 6.5885 40 1 9.7847 -3.2376 5.2287 41 1 9.2440 -3.7553 8.2041 42 1 10.3060 -4.6742 7.0937 43 1 5.1605 -6.8575 5.9233 44 1 7.0751 -4.5721 5.1015 45 1 6.2963 -4.1702 6.6559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569758706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:13 Heat of formation + Delta-G solvation = -169.786004 kcal Electronic energy + Delta-G solvation = -26976.814217 eV Core-core repulsion = 22928.034777 eV Total energy + Delta-G solvation = -4048.779440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 39.63 seconds Orbital eigenvalues (eV) -41.08591 -39.87957 -37.94785 -37.00225 -36.75585 -35.63313 -35.24287 -34.12538 -31.42199 -30.46277 -29.95917 -28.94762 -27.38704 -25.33663 -23.31072 -22.20231 -21.36563 -21.16756 -19.78046 -19.10531 -18.51375 -17.80242 -17.41693 -17.31639 -16.88013 -16.79310 -16.65897 -16.22240 -15.86942 -15.68140 -15.37764 -14.91168 -14.67460 -14.37613 -14.09907 -13.95163 -13.86165 -13.74563 -13.53572 -13.30849 -13.19062 -13.05582 -12.99090 -12.92758 -12.90143 -12.71285 -12.39094 -12.12501 -11.94619 -11.91964 -11.87979 -11.78532 -11.70005 -11.39063 -10.90682 -10.79815 -10.71414 -10.12782 -8.88622 -7.87394 -5.19924 -0.86947 1.47335 1.47978 1.56555 1.64216 1.96280 2.16724 2.49095 2.82527 3.18328 3.18936 3.31421 3.45074 3.57545 3.87883 3.88473 3.91316 3.93334 3.96321 4.15126 4.19341 4.27551 4.44715 4.49211 4.54010 4.66085 4.74090 4.77285 4.81202 4.95182 4.97211 5.00995 5.03178 5.15194 5.31830 5.36562 5.41464 5.51147 5.67146 6.18422 6.49507 6.78384 7.10317 7.22428 7.75684 8.41051 9.23487 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.002396 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.601913 B =11681.218476 C =13056.416913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.632 4.632 2 S 2.411 3.589 3 O -0.993 6.993 4 O -0.997 6.997 5 C -0.595 4.595 6 C -0.108 4.108 7 C -0.127 4.127 8 C 0.504 3.496 9 O -0.590 6.590 10 N -0.717 5.717 11 C 0.119 3.881 12 C 0.105 3.895 13 O -0.553 6.553 14 C -0.109 4.109 15 C 0.130 3.870 16 N -0.628 5.628 17 C -0.245 4.245 18 H 0.079 0.921 19 C -0.060 4.060 20 N -0.942 5.942 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.176 3.824 26 H 0.157 0.843 27 H 0.133 0.867 28 H 0.154 0.846 29 H 0.166 0.834 30 H 0.174 0.826 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.412 0.588 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.383 0.617 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.023 0.977 42 H 0.047 0.953 43 H 0.248 0.752 44 H 0.019 0.981 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.904 13.613 -5.371 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.600 3.400 3 O -0.990 6.990 4 O -0.994 6.994 5 C -0.726 4.726 6 C -0.147 4.147 7 C -0.167 4.167 8 C 0.292 3.708 9 O -0.471 6.471 10 N -0.369 5.369 11 C -0.006 4.006 12 C 0.063 3.937 13 O -0.360 6.360 14 C -0.147 4.147 15 C 0.005 3.995 16 N -0.354 5.354 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.254 4.254 20 N -0.591 5.591 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.050 3.950 26 H 0.176 0.824 27 H 0.151 0.849 28 H 0.172 0.828 29 H 0.184 0.816 30 H 0.192 0.808 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.248 0.752 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.232 0.768 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.270 14.075 -6.532 19.782 hybrid contribution -1.243 -1.668 0.795 2.227 sum -13.513 12.407 -5.737 19.221 Atomic orbital electron populations 1.30052 1.21053 1.14016 1.13396 1.07663 0.80251 0.74163 0.77904 1.93538 1.81252 1.36858 1.87378 1.93544 1.81298 1.67737 1.56846 1.30216 1.03342 1.16639 1.22355 1.21062 0.92857 1.02622 0.98191 1.21710 0.89600 1.05848 0.99534 1.21467 0.92719 0.75866 0.80721 1.90688 1.63262 1.50231 1.42934 1.45917 1.07639 1.63154 1.20188 1.21708 0.81755 1.01026 0.96140 1.22559 0.96040 0.89816 0.85254 1.86487 1.27218 1.71146 1.51124 1.22707 0.92505 0.99009 1.00475 1.21720 0.90764 0.90987 0.96072 1.44712 1.19327 1.05230 1.66172 1.19430 0.98664 0.84492 1.34852 0.90340 1.25563 0.96348 1.02384 1.01070 1.70091 1.07192 1.37287 1.44534 0.85115 0.77653 0.79736 0.77140 1.21410 1.22035 1.19806 1.21552 0.91373 0.86939 0.95114 0.82421 0.84889 0.82756 0.81572 0.80835 0.91005 0.91933 0.86187 0.84628 0.75198 0.90418 0.92456 0.76780 0.88229 0.89460 0.95894 0.93473 0.94225 0.96296 0.95561 Number of geometries 1 Number of calculations of the screened coulomb radii 15 The total number of SCF iterations 947. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.52 10.62 113.37 1.20 -0.31 16 2 S 2.41 31.80 5.36 -56.49 -0.30 31.50 16 3 O -0.99 -22.48 18.10 -127.37 -2.30 -24.79 16 4 O -1.00 -23.86 18.10 -127.37 -2.30 -26.16 16 5 C -0.60 -4.55 5.81 71.98 0.42 -4.13 16 6 C -0.11 -2.00 4.51 30.59 0.14 -1.86 16 7 C -0.13 -2.10 5.70 29.85 0.17 -1.93 16 8 C 0.50 13.87 7.83 87.66 0.69 14.55 16 9 O -0.59 -21.59 15.98 -3.01 -0.05 -21.63 16 10 N -0.72 -19.24 5.17 -463.06 -2.40 -21.64 16 11 C 0.12 3.70 4.73 86.38 0.41 4.11 16 12 C 0.11 3.58 0.92 -9.61 -0.01 3.57 16 13 O -0.55 -17.31 13.10 -148.98 -1.95 -19.26 16 14 C -0.11 -3.60 6.26 31.98 0.20 -3.40 16 15 C 0.13 5.25 7.23 86.85 0.63 5.88 16 16 N -0.63 -31.36 3.39 -692.01 -2.35 -33.71 16 17 C -0.25 -13.47 10.26 84.03 0.86 -12.61 16 18 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 19 C -0.06 -3.29 5.48 84.86 0.47 -2.82 16 20 N -0.94 -52.77 10.36 21.65 0.22 -52.55 16 21 Si 0.97 44.36 29.56 68.60 2.03 46.39 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 C 0.18 7.89 4.16 86.73 0.36 8.25 16 26 H 0.16 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.17 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.17 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.07 1.53 8.10 -2.38 -0.02 1.51 16 32 H 0.06 1.46 8.10 -2.39 -0.02 1.45 16 33 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.41 9.47 7.38 -92.71 -0.68 8.79 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 38 H 0.38 9.30 8.12 -74.06 -0.60 8.70 16 39 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.09 2.77 8.04 -2.39 -0.02 2.75 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 44 H 0.02 0.97 7.23 -2.38 -0.02 0.95 16 45 H 0.03 1.29 7.28 -2.39 -0.02 1.27 16 Total: -1.00 -89.79 382.03 -4.16 -93.95 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -0.28 Total: 18.61 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 5.53 Total: 9.29 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.52 Total: -107.90 kcal Atomic # 8 Polarization: -85.23 SS G_CDS: -6.61 Total: -91.84 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 31.80 SS G_CDS: -0.30 Total: 31.50 kcal Total: -89.79 -4.16 -93.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569758706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.837 kcal (2) G-P(sol) polarization free energy of solvation -89.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 39.63 seconds