Wall clock time and date at job start Tue Mar 31 2020 17:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42100 * 108.58033 * 2 1 4 4 O 1.42108 * 108.58089 * 228.97613 * 2 1 3 5 5 C 1.81397 * 101.92145 * 114.48975 * 2 1 3 6 6 C 1.53001 * 109.47514 * 179.97438 * 5 2 1 7 7 C 1.52993 * 109.47072 * 179.97438 * 6 5 2 8 8 C 1.50705 * 109.46949 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99783 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99965 * 180.02562 * 10 8 7 12 12 C 1.52990 * 109.47021 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.71505 * 56.66275 * 12 11 10 14 14 C 1.53713 * 109.74694 * 177.43337 * 12 11 10 15 15 O 1.42966 * 109.14951 * 172.16238 * 14 12 11 16 16 C 1.42963 * 114.16616 * 297.28662 * 15 14 12 17 17 C 1.53302 * 109.22102 * 62.58288 * 16 15 14 18 18 N 1.47155 * 109.68073 * 296.12202 * 12 11 10 19 19 C 1.36935 * 120.98326 * 9.76883 * 18 12 11 20 20 H 1.08001 * 119.99652 * 345.33877 * 19 18 12 21 21 C 1.38815 * 120.00049 * 165.33179 * 19 18 12 22 22 N 1.31621 * 119.99656 * 139.70590 * 21 19 18 23 23 Si 1.86795 * 119.99948 * 319.70838 * 21 19 18 24 24 H 1.48507 * 109.46981 * 275.60520 * 23 21 19 25 25 H 1.48492 * 109.47381 * 35.60706 * 23 21 19 26 26 H 1.48499 * 109.46911 * 155.61233 * 23 21 19 27 27 H 1.08999 * 109.47086 * 305.51616 * 1 2 3 28 28 H 1.09008 * 109.46565 * 65.51173 * 1 2 3 29 29 H 1.08993 * 109.47125 * 185.50479 * 1 2 3 30 30 H 1.08999 * 109.47188 * 59.99749 * 5 2 1 31 31 H 1.08999 * 109.47106 * 300.00074 * 5 2 1 32 32 H 1.09003 * 109.46672 * 60.00264 * 6 5 2 33 33 H 1.08999 * 109.47199 * 300.00267 * 6 5 2 34 34 H 1.08999 * 109.47244 * 60.00235 * 7 6 5 35 35 H 1.08998 * 109.47476 * 299.99736 * 7 6 5 36 36 H 0.96999 * 119.99909 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47363 * 59.99210 * 11 10 8 38 38 H 1.08999 * 109.46923 * 299.99540 * 11 10 8 39 39 H 1.09003 * 109.65872 * 52.19960 * 14 12 11 40 40 H 1.09003 * 109.44363 * 291.99969 * 14 12 11 41 41 H 1.09000 * 109.51287 * 302.65824 * 16 15 14 42 42 H 1.08996 * 109.55029 * 182.52537 * 16 15 14 43 43 H 1.08991 * 109.67726 * 187.97302 * 17 16 15 44 44 H 1.08996 * 109.71051 * 67.43836 * 17 16 15 45 45 H 0.96994 * 119.99961 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8197 1.7979 7 6 4.0214 -1.4396 3.1605 8 6 5.5153 -1.5217 3.3407 9 8 6.2545 -1.1240 2.4653 10 7 6.0300 -2.0381 4.4743 11 6 7.4823 -2.1174 4.6498 12 6 7.7983 -2.7374 6.0123 13 1 7.3228 -3.7151 6.0905 14 6 9.3197 -2.8828 6.1765 15 8 9.6101 -3.2897 7.5159 16 6 9.2160 -2.3442 8.5132 17 6 7.6938 -2.1680 8.4682 18 7 7.3033 -1.8584 7.0836 19 6 6.4983 -0.7873 6.8010 20 1 6.4077 -0.4331 5.7848 21 6 5.7985 -0.1569 7.8208 22 7 5.6985 1.1554 7.8367 23 14 4.9989 -1.1710 9.1704 24 1 3.6632 -1.6344 8.7159 25 1 5.8524 -2.3466 9.4779 26 1 4.8452 -0.3382 10.3902 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4260 -0.9353 29 1 -0.3633 -1.0229 0.0986 30 1 1.7610 -1.7370 1.6664 31 1 1.7610 -0.1172 2.4042 32 1 4.1335 0.1815 1.7466 33 1 4.1328 -1.4385 1.0089 34 1 3.5932 -2.4407 3.2123 35 1 3.5941 -0.8205 3.9493 36 1 5.4388 -2.3565 5.1743 37 1 7.9097 -1.1160 4.5987 38 1 7.9104 -2.7357 3.8608 39 1 9.8034 -1.9273 5.9733 40 1 9.6897 -3.6345 5.4793 41 1 9.6993 -1.3868 8.3185 42 1 9.5114 -2.7078 9.4974 43 1 7.3996 -1.3491 9.1245 44 1 7.2075 -3.0890 8.7897 45 1 5.2098 1.5959 8.5494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570072383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:13 Heat of formation + Delta-G solvation = -109.554634 kcal Electronic energy + Delta-G solvation = -27541.368718 eV Core-core repulsion = 23495.201106 eV Total energy + Delta-G solvation = -4046.167612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -39.54160 -38.58366 -37.13866 -36.19865 -35.62120 -34.58336 -33.73505 -31.82187 -31.04813 -30.00161 -28.58599 -27.45271 -25.41432 -23.53083 -22.66093 -21.84693 -20.07869 -19.68475 -19.03847 -17.38481 -16.77563 -16.53630 -16.43576 -16.12418 -15.92495 -15.77261 -15.43294 -15.01716 -14.97007 -14.44463 -13.99006 -13.97325 -13.68137 -13.58302 -13.51401 -13.08407 -12.68788 -12.64120 -12.36329 -12.23529 -12.14894 -12.07197 -11.98671 -11.90550 -11.61359 -11.24616 -11.06382 -10.93613 -10.82023 -10.67112 -10.54456 -10.29003 -9.91460 -9.65826 -9.32553 -9.28783 -8.44848 -8.38153 -7.27792 -6.15523 -3.28694 -0.25012 2.53085 3.09009 3.26269 3.37584 3.38928 3.45437 3.69242 3.77307 4.28898 4.42414 4.43531 4.46071 4.47562 4.59936 4.75096 4.89932 5.12274 5.23833 5.29356 5.31081 5.39484 5.40409 5.53940 5.62558 5.69434 5.82001 5.91923 5.93305 5.95058 6.02139 6.08427 6.12073 6.23737 6.40387 6.58181 6.74640 6.97707 7.60350 7.68273 8.04811 8.14298 8.70950 8.75635 9.58604 9.94165 10.95606 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002826 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.403265 B = 9906.308650 C =11033.333846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.422 3.578 3 O -0.936 6.936 4 O -0.940 6.940 5 C -0.610 4.610 6 C -0.095 4.095 7 C -0.133 4.133 8 C 0.510 3.490 9 O -0.557 6.557 10 N -0.701 5.701 11 C 0.133 3.867 12 C 0.130 3.870 13 H 0.044 0.956 14 C 0.055 3.945 15 O -0.389 6.389 16 C 0.041 3.959 17 C 0.113 3.887 18 N -0.601 5.601 19 C -0.287 4.287 20 H 0.105 0.895 21 C 0.039 3.961 22 N -0.869 5.869 23 Si 0.812 3.188 24 H -0.294 1.294 25 H -0.248 1.248 26 H -0.296 1.296 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.410 0.590 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 -7.122 -8.479 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.604 3.396 3 O -0.934 6.934 4 O -0.937 6.937 5 C -0.739 4.739 6 C -0.134 4.134 7 C -0.174 4.174 8 C 0.296 3.704 9 O -0.436 6.436 10 N -0.352 5.352 11 C 0.009 3.991 12 C 0.023 3.977 13 H 0.062 0.938 14 C -0.024 4.024 15 O -0.308 6.308 16 C -0.037 4.037 17 C -0.013 4.013 18 N -0.327 5.327 19 C -0.413 4.413 20 H 0.122 0.878 21 C -0.162 4.162 22 N -0.509 5.509 23 Si 0.638 3.362 24 H -0.222 1.222 25 H -0.173 1.173 26 H -0.223 1.223 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.246 0.754 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.072 -6.518 -9.660 13.631 hybrid contribution -1.927 -0.584 2.050 2.874 sum -9.000 -7.101 -7.610 13.760 Atomic orbital electron populations 1.30306 1.27403 1.11396 1.11692 1.07814 0.78007 0.75916 0.77828 1.93619 1.78734 1.34494 1.86507 1.93600 1.78868 1.67084 1.54191 1.30360 1.06652 1.13893 1.23029 1.21036 0.89408 1.04269 0.98667 1.21580 0.93871 1.03300 0.98674 1.20442 0.90524 0.77513 0.81953 1.90674 1.61675 1.48819 1.42436 1.45958 1.08176 1.62385 1.18698 1.21201 0.81022 1.01727 0.95182 1.21473 0.93967 0.93718 0.88510 0.93815 1.22983 0.95450 1.00051 0.83951 1.87816 1.82423 1.45351 1.15202 1.23184 0.97049 0.92523 0.90921 1.22115 0.92411 0.99350 0.87384 1.44503 1.56673 1.31145 1.00351 1.19081 1.22054 1.03278 0.96904 0.87786 1.24913 1.00417 0.94672 0.96218 1.70216 1.39929 1.07451 1.33295 0.88270 0.82078 0.83072 0.82746 1.22209 1.17315 1.22313 0.85339 0.85425 0.85473 0.84964 0.84675 0.89217 0.89532 0.88957 0.88067 0.75404 0.90656 0.92025 0.92789 0.89478 0.93031 0.89830 0.90664 0.94575 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.90 10.62 101.05 1.07 -1.82 16 2 S 2.42 20.51 5.36 -107.50 -0.58 19.94 16 3 O -0.94 -12.21 18.10 -57.83 -1.05 -13.25 16 4 O -0.94 -11.55 18.10 -57.83 -1.05 -12.59 16 5 C -0.61 -4.52 5.81 37.16 0.22 -4.30 16 6 C -0.09 -1.15 4.51 -26.73 -0.12 -1.27 16 7 C -0.13 -1.69 5.70 -27.88 -0.16 -1.85 16 8 C 0.51 8.70 7.83 -10.98 -0.09 8.61 16 9 O -0.56 -11.34 15.98 5.55 0.09 -11.26 16 10 N -0.70 -11.94 3.60 -60.29 -0.22 -12.15 16 11 C 0.13 2.31 4.42 -4.04 -0.02 2.29 16 12 C 0.13 2.30 3.19 -67.21 -0.21 2.08 16 13 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 14 C 0.05 0.88 6.31 37.53 0.24 1.12 16 15 O -0.39 -6.90 10.74 -35.23 -0.38 -7.28 16 16 C 0.04 0.73 6.99 37.31 0.26 0.99 16 17 C 0.11 2.29 4.41 -3.53 -0.02 2.27 16 18 N -0.60 -12.72 2.94 -164.06 -0.48 -13.21 16 19 C -0.29 -6.99 8.09 -15.06 -0.12 -7.11 16 20 H 0.10 2.68 5.30 -52.49 -0.28 2.40 16 21 C 0.04 1.02 4.90 -17.43 -0.09 0.94 16 22 N -0.87 -24.53 13.97 55.49 0.78 -23.75 16 23 Si 0.81 18.84 26.36 -169.99 -4.48 14.35 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.25 -5.38 4.33 56.52 0.24 -5.13 16 26 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 27 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.13 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.13 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.13 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.41 6.81 7.60 -40.82 -0.31 6.50 16 37 H 0.08 1.52 7.54 -51.93 -0.39 1.13 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.65 4.88 -51.93 -0.25 1.39 16 44 H 0.04 0.74 6.82 -51.93 -0.35 0.39 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -36.91 368.95 -8.05 -44.96 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.22 Total: 6.72 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 0.97 Total: 1.95 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.08 Total: -49.11 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -2.38 Total: -44.38 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.48 Total: 14.35 kcal Atomic # 16 Polarization: 20.51 SS G_CDS: -0.58 Total: 19.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.91 -8.05 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570072383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.594 kcal (2) G-P(sol) polarization free energy of solvation -36.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds