Wall clock time and date at job start Tue Mar 31 2020 17:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42100 * 108.58033 * 2 1 4 4 O 1.42108 * 108.58089 * 228.97613 * 2 1 3 5 5 C 1.81397 * 101.92145 * 114.48975 * 2 1 3 6 6 C 1.53001 * 109.47514 * 179.97438 * 5 2 1 7 7 C 1.52993 * 109.47072 * 179.97438 * 6 5 2 8 8 C 1.50705 * 109.46949 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99783 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99965 * 180.02562 * 10 8 7 12 12 C 1.52990 * 109.47021 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.71505 * 56.66275 * 12 11 10 14 14 C 1.53713 * 109.74694 * 177.43337 * 12 11 10 15 15 O 1.42966 * 109.14951 * 172.16238 * 14 12 11 16 16 C 1.42963 * 114.16616 * 297.28662 * 15 14 12 17 17 C 1.53302 * 109.22102 * 62.58288 * 16 15 14 18 18 N 1.47155 * 109.68073 * 296.12202 * 12 11 10 19 19 C 1.36935 * 120.98326 * 9.76883 * 18 12 11 20 20 H 1.08001 * 119.99652 * 345.33877 * 19 18 12 21 21 C 1.38815 * 120.00049 * 165.33179 * 19 18 12 22 22 N 1.31621 * 119.99656 * 139.70590 * 21 19 18 23 23 Si 1.86795 * 119.99948 * 319.70838 * 21 19 18 24 24 H 1.48507 * 109.46981 * 275.60520 * 23 21 19 25 25 H 1.48492 * 109.47381 * 35.60706 * 23 21 19 26 26 H 1.48499 * 109.46911 * 155.61233 * 23 21 19 27 27 H 1.08999 * 109.47086 * 305.51616 * 1 2 3 28 28 H 1.09008 * 109.46565 * 65.51173 * 1 2 3 29 29 H 1.08993 * 109.47125 * 185.50479 * 1 2 3 30 30 H 1.08999 * 109.47188 * 59.99749 * 5 2 1 31 31 H 1.08999 * 109.47106 * 300.00074 * 5 2 1 32 32 H 1.09003 * 109.46672 * 60.00264 * 6 5 2 33 33 H 1.08999 * 109.47199 * 300.00267 * 6 5 2 34 34 H 1.08999 * 109.47244 * 60.00235 * 7 6 5 35 35 H 1.08998 * 109.47476 * 299.99736 * 7 6 5 36 36 H 0.96999 * 119.99909 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47363 * 59.99210 * 11 10 8 38 38 H 1.08999 * 109.46923 * 299.99540 * 11 10 8 39 39 H 1.09003 * 109.65872 * 52.19960 * 14 12 11 40 40 H 1.09003 * 109.44363 * 291.99969 * 14 12 11 41 41 H 1.09000 * 109.51287 * 302.65824 * 16 15 14 42 42 H 1.08996 * 109.55029 * 182.52537 * 16 15 14 43 43 H 1.08991 * 109.67726 * 187.97302 * 17 16 15 44 44 H 1.08996 * 109.71051 * 67.43836 * 17 16 15 45 45 H 0.96994 * 119.99961 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8197 1.7979 7 6 4.0214 -1.4396 3.1605 8 6 5.5153 -1.5217 3.3407 9 8 6.2545 -1.1240 2.4653 10 7 6.0300 -2.0381 4.4743 11 6 7.4823 -2.1174 4.6498 12 6 7.7983 -2.7374 6.0123 13 1 7.3228 -3.7151 6.0905 14 6 9.3197 -2.8828 6.1765 15 8 9.6101 -3.2897 7.5159 16 6 9.2160 -2.3442 8.5132 17 6 7.6938 -2.1680 8.4682 18 7 7.3033 -1.8584 7.0836 19 6 6.4983 -0.7873 6.8010 20 1 6.4077 -0.4331 5.7848 21 6 5.7985 -0.1569 7.8208 22 7 5.6985 1.1554 7.8367 23 14 4.9989 -1.1710 9.1704 24 1 3.6632 -1.6344 8.7159 25 1 5.8524 -2.3466 9.4779 26 1 4.8452 -0.3382 10.3902 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4260 -0.9353 29 1 -0.3633 -1.0229 0.0986 30 1 1.7610 -1.7370 1.6664 31 1 1.7610 -0.1172 2.4042 32 1 4.1335 0.1815 1.7466 33 1 4.1328 -1.4385 1.0089 34 1 3.5932 -2.4407 3.2123 35 1 3.5941 -0.8205 3.9493 36 1 5.4388 -2.3565 5.1743 37 1 7.9097 -1.1160 4.5987 38 1 7.9104 -2.7357 3.8608 39 1 9.8034 -1.9273 5.9733 40 1 9.6897 -3.6345 5.4793 41 1 9.6993 -1.3868 8.3185 42 1 9.5114 -2.7078 9.4974 43 1 7.3996 -1.3491 9.1245 44 1 7.2075 -3.0890 8.7897 45 1 5.2098 1.5959 8.5494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570072383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:12 Heat of formation + Delta-G solvation = -140.882773 kcal Electronic energy + Delta-G solvation = -27542.727208 eV Core-core repulsion = 23495.201106 eV Total energy + Delta-G solvation = -4047.526102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.96121 -40.01846 -37.94697 -37.09917 -36.98204 -35.63393 -35.30109 -33.57018 -32.56382 -30.46352 -29.61177 -29.02134 -26.74195 -25.24975 -23.95830 -23.02845 -21.57887 -21.08063 -19.76720 -18.86871 -18.03712 -17.65879 -17.48441 -17.27448 -17.12976 -16.80188 -16.68208 -16.39294 -16.32138 -15.98673 -15.53912 -15.17279 -15.04436 -14.45591 -14.24072 -14.09705 -14.00934 -13.86616 -13.61981 -13.48993 -13.31043 -13.08824 -12.99491 -12.92410 -12.88768 -12.73626 -12.42451 -12.18104 -12.01343 -11.92309 -11.88803 -11.40544 -11.38150 -11.21884 -11.05425 -10.75788 -10.22457 -9.89178 -9.04928 -8.13081 -5.22819 -0.87460 1.40834 1.54140 1.54877 1.73703 1.95556 2.32400 2.53312 2.79058 2.85971 2.99930 3.17953 3.30985 3.60508 3.86857 3.93818 3.96574 4.08371 4.15658 4.21710 4.26042 4.29078 4.35699 4.45238 4.45551 4.53382 4.60641 4.67558 4.74082 4.76065 4.79776 4.95358 4.97471 5.01893 5.03047 5.15040 5.25661 5.58677 5.83442 6.18267 6.22677 6.68089 6.88267 7.35776 7.68366 8.06651 9.01082 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002826 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.403265 B = 9906.308650 C =11033.333846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.415 3.585 3 O -0.997 6.997 4 O -0.990 6.990 5 C -0.598 4.598 6 C -0.104 4.104 7 C -0.127 4.127 8 C 0.499 3.501 9 O -0.598 6.598 10 N -0.700 5.700 11 C 0.137 3.863 12 C 0.132 3.868 13 H 0.064 0.936 14 C 0.055 3.945 15 O -0.390 6.390 16 C 0.048 3.952 17 C 0.107 3.893 18 N -0.613 5.613 19 C -0.258 4.258 20 H 0.082 0.918 21 C -0.014 4.014 22 N -0.926 5.926 23 Si 0.872 3.128 24 H -0.297 1.297 25 H -0.221 1.221 26 H -0.315 1.315 27 H 0.152 0.848 28 H 0.135 0.865 29 H 0.158 0.842 30 H 0.174 0.826 31 H 0.160 0.840 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.413 0.587 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.123 0.877 41 H 0.041 0.959 42 H 0.115 0.885 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 -10.248 -7.632 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.784 4.784 2 S 2.604 3.396 3 O -0.994 6.994 4 O -0.987 6.987 5 C -0.728 4.728 6 C -0.143 4.143 7 C -0.167 4.167 8 C 0.287 3.713 9 O -0.480 6.480 10 N -0.351 5.351 11 C 0.013 3.987 12 C 0.026 3.974 13 H 0.081 0.919 14 C -0.023 4.023 15 O -0.308 6.308 16 C -0.030 4.030 17 C -0.018 4.018 18 N -0.339 5.339 19 C -0.386 4.386 20 H 0.100 0.900 21 C -0.212 4.212 22 N -0.570 5.570 23 Si 0.700 3.300 24 H -0.226 1.226 25 H -0.144 1.144 26 H -0.243 1.243 27 H 0.171 0.829 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.192 0.808 31 H 0.178 0.822 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.250 0.750 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.141 0.859 41 H 0.059 0.941 42 H 0.133 0.867 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.680 -9.706 -8.814 15.724 hybrid contribution -1.380 0.358 1.724 2.237 sum -10.060 -9.348 -7.090 15.455 Atomic orbital electron populations 1.30039 1.20842 1.14165 1.13315 1.07577 0.80314 0.74102 0.77617 1.93545 1.81366 1.37209 1.87309 1.93535 1.81283 1.67549 1.56310 1.30245 1.03282 1.16796 1.22486 1.21018 0.92898 1.02228 0.98180 1.21654 0.90460 1.05735 0.98884 1.21313 0.92450 0.76307 0.81187 1.90651 1.63151 1.50426 1.43789 1.45984 1.08050 1.62207 1.18812 1.21116 0.81493 1.00051 0.96061 1.21657 0.95057 0.93528 0.87137 0.91880 1.23091 0.94113 1.00927 0.84188 1.87830 1.82218 1.45225 1.15555 1.23132 0.94792 0.92527 0.92569 1.22184 0.94502 0.98800 0.86360 1.44628 1.56129 1.31242 1.01886 1.19017 1.20807 1.03064 0.95718 0.90027 1.25371 1.01925 0.95065 0.98809 1.70316 1.42479 1.09214 1.34962 0.87315 0.81113 0.82110 0.79426 1.22566 1.14442 1.24333 0.82918 0.84638 0.82331 0.80824 0.82186 0.92398 0.90616 0.84919 0.87594 0.75026 0.94318 0.89916 0.93851 0.85875 0.94092 0.86691 0.92551 0.93635 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.22 10.62 113.37 1.20 -2.01 16 2 S 2.42 39.87 5.36 -56.49 -0.30 39.57 16 3 O -1.00 -27.48 18.10 -127.37 -2.31 -29.78 16 4 O -0.99 -24.86 18.10 -127.37 -2.31 -27.16 16 5 C -0.60 -7.56 5.81 71.98 0.42 -7.14 16 6 C -0.10 -2.53 4.51 30.59 0.14 -2.39 16 7 C -0.13 -3.06 5.70 29.85 0.17 -2.89 16 8 C 0.50 17.19 7.83 87.66 0.69 17.87 16 9 O -0.60 -25.37 15.98 -3.04 -0.05 -25.42 16 10 N -0.70 -23.51 3.60 -463.06 -1.67 -25.18 16 11 C 0.14 4.71 4.42 86.37 0.38 5.09 16 12 C 0.13 4.39 3.19 45.10 0.14 4.53 16 13 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 14 C 0.06 1.65 6.31 72.22 0.46 2.11 16 15 O -0.39 -12.54 10.74 -148.98 -1.60 -14.14 16 16 C 0.05 1.56 6.99 72.08 0.50 2.06 16 17 C 0.11 4.08 4.41 86.36 0.38 4.46 16 18 N -0.61 -25.16 2.94 -672.95 -1.98 -27.13 16 19 C -0.26 -12.63 8.09 84.03 0.68 -11.95 16 20 H 0.08 4.33 5.30 -2.91 -0.02 4.31 16 21 C -0.01 -0.75 4.90 84.86 0.42 -0.34 16 22 N -0.93 -53.98 13.97 21.65 0.30 -53.68 16 23 Si 0.87 39.08 26.36 68.60 1.81 40.89 16 24 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.22 -8.79 4.33 99.48 0.43 -8.36 16 26 H -0.32 -15.05 7.11 99.48 0.71 -14.34 16 27 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.16 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.17 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.73 8.10 -2.39 -0.02 1.72 16 33 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 34 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.41 13.19 7.60 -92.71 -0.70 12.48 16 37 H 0.04 1.61 7.54 -2.39 -0.02 1.59 16 38 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 40 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.06 2.38 4.88 -2.39 -0.01 2.37 16 44 H 0.05 1.69 6.82 -2.39 -0.02 1.67 16 45 H 0.26 14.50 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -85.38 368.95 -2.50 -87.89 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.02 Total: 24.74 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.58 Total: 9.41 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -3.34 Total: -105.99 kcal Atomic # 8 Polarization: -90.24 SS G_CDS: -6.26 Total: -96.50 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 1.81 Total: 40.89 kcal Atomic # 16 Polarization: 39.87 SS G_CDS: -0.30 Total: 39.57 kcal Total: -85.38 -2.50 -87.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570072383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.998 kcal (2) G-P(sol) polarization free energy of solvation -85.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds