Wall clock time and date at job start Tue Mar 31 2020 18:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.89272 * 57.42252 * 11 10 9 13 13 C 1.55162 * 111.00826 * 181.34993 * 11 10 9 14 14 C 1.54323 * 102.94224 * 153.57556 * 13 11 10 15 15 N 1.47015 * 107.27232 * 337.80223 * 14 13 11 16 16 C 1.34776 * 125.64737 * 178.97563 * 15 14 13 17 17 O 1.21707 * 119.99980 * 179.97438 * 16 15 14 18 18 C 1.46586 * 120.00340 * 359.96607 * 16 15 14 19 19 C 1.36110 * 125.46039 * 179.71686 * 18 16 15 20 20 C 1.38275 * 114.09977 * 179.83149 * 19 18 16 21 21 C 1.35244 * 113.92687 * 0.44700 * 20 19 18 22 22 S 1.70752 * 111.10612 * 359.76057 * 21 20 19 23 23 C 1.51707 * 124.33478 * 179.78486 * 21 20 19 24 24 C 1.53095 * 108.75641 * 343.45264 * 23 21 20 25 25 C 1.53139 * 108.99799 * 50.06649 * 24 23 21 26 26 C 1.52331 * 123.07506 * 180.22078 * 20 19 18 27 27 C 1.47420 * 108.70545 * 358.94857 * 15 14 13 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 31 31 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 32 32 H 1.09005 * 110.71701 * 271.93654 * 13 11 10 33 33 H 1.09004 * 110.71556 * 35.20782 * 13 11 10 34 34 H 1.09008 * 109.87644 * 218.38849 * 14 13 11 35 35 H 1.09000 * 110.01166 * 97.30000 * 14 13 11 36 36 H 1.08003 * 122.95059 * 359.97438 * 19 18 16 37 37 H 1.08994 * 109.59443 * 103.22126 * 23 21 20 38 38 H 1.09005 * 109.58842 * 223.66805 * 23 21 20 39 39 H 1.09001 * 109.54555 * 290.21652 * 24 23 21 40 40 H 1.09003 * 109.55011 * 169.92576 * 24 23 21 41 41 H 1.09003 * 109.51132 * 169.23391 * 25 24 23 42 42 H 1.09005 * 109.55482 * 49.10745 * 25 24 23 43 43 H 1.09004 * 109.58096 * 282.66448 * 26 20 19 44 44 H 1.08999 * 109.58480 * 43.07941 * 26 20 19 45 45 H 1.09012 * 110.36673 * 265.28515 * 27 15 14 46 46 H 1.08997 * 110.37111 * 142.96298 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8984 -1.5811 0.8592 13 6 6.4279 -3.5132 -0.0331 14 6 7.7538 -3.0879 -0.6984 15 7 7.4847 -1.8613 -1.4629 16 6 8.3929 -1.1632 -2.1730 17 8 8.0561 -0.1576 -2.7702 18 6 9.7865 -1.6148 -2.2259 19 6 10.7901 -1.0008 -2.9102 20 6 12.0175 -1.6271 -2.7950 21 6 11.9946 -2.7422 -2.0302 22 16 10.4268 -3.0391 -1.4226 23 6 13.2051 -3.6128 -1.7503 24 6 14.2975 -3.2795 -2.7698 25 6 14.4962 -1.7616 -2.8093 26 6 13.2807 -1.1114 -3.4724 27 6 6.0568 -1.5217 -1.3247 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3620 0.0007 30 1 3.8486 -3.0425 0.8909 31 1 3.8493 -3.0422 -0.8891 32 1 6.6046 -3.8834 0.9769 33 1 5.9170 -4.2638 -0.6362 34 1 8.1008 -3.8740 -1.3690 35 1 8.5076 -2.8917 0.0640 36 1 10.6414 -0.1019 -3.4902 37 1 13.5727 -3.4150 -0.7434 38 1 12.9286 -4.6633 -1.8411 39 1 13.9965 -3.6337 -3.7558 40 1 15.2299 -3.7620 -2.4763 41 1 15.3929 -1.5266 -3.3828 42 1 14.6036 -1.3811 -1.7935 43 1 13.2596 -1.3710 -4.5309 44 1 13.3392 -0.0287 -3.3607 45 1 5.4878 -1.9270 -2.1616 46 1 5.9278 -0.4411 -1.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662723624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:59 Heat of formation + Delta-G solvation = -4.057911 kcal Electronic energy + Delta-G solvation = -25879.872658 eV Core-core repulsion = 22281.421741 eV Total energy + Delta-G solvation = -3598.450916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.20077 -39.46376 -37.71008 -35.26154 -34.88793 -32.37881 -31.33438 -30.83693 -29.75338 -28.82655 -26.16261 -24.43200 -24.07284 -23.20360 -21.78718 -21.55171 -20.25294 -19.78339 -18.28870 -18.19768 -17.49503 -16.53561 -16.18922 -15.74118 -15.23698 -14.99500 -14.75572 -14.46982 -14.30513 -13.92000 -13.81895 -13.51536 -13.30863 -13.06807 -13.02507 -12.86408 -12.77355 -12.60784 -12.35295 -12.01184 -11.84236 -11.73265 -11.42494 -11.32985 -11.09155 -10.96759 -10.80499 -10.71818 -10.63045 -10.43189 -10.13221 -10.05975 -9.58053 -9.01330 -8.89904 -8.64015 -8.55992 -7.24085 -5.76168 -3.12338 0.30390 1.22448 1.67753 2.08735 2.83561 3.10255 3.40814 3.45267 3.48920 4.16991 4.24436 4.40887 4.42104 4.48434 4.61076 4.66473 4.73473 4.75352 4.83691 5.02776 5.07307 5.12036 5.19334 5.27756 5.30603 5.36595 5.42109 5.47849 5.53424 5.55070 5.62293 5.68881 5.72982 5.76242 5.79397 5.84456 5.87113 6.00700 6.09548 6.14438 6.19463 6.29239 6.56937 6.68282 7.38492 7.98602 8.03720 8.42498 9.20993 9.93590 10.12369 11.41970 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.026631 B = 0.002407 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.136109 B =11630.529372 C =12452.269768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.170 3.830 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.118 4.118 14 C 0.088 3.912 15 N -0.614 5.614 16 C 0.601 3.399 17 O -0.529 6.529 18 C -0.259 4.259 19 C -0.052 4.052 20 C -0.119 4.119 21 C -0.214 4.214 22 S 0.210 5.790 23 C -0.049 4.049 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.057 4.057 27 C 0.115 3.885 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.666 -10.551 -3.325 34.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.130 4.130 12 H 0.104 0.896 13 C -0.156 4.156 14 C -0.037 4.037 15 N -0.348 5.348 16 C 0.389 3.611 17 O -0.407 6.407 18 C -0.379 4.379 19 C -0.085 4.085 20 C -0.131 4.131 21 C -0.333 4.333 22 S 0.481 5.519 23 C -0.088 4.088 24 C -0.154 4.154 25 C -0.158 4.158 26 C -0.096 4.096 27 C -0.006 4.006 28 H 0.070 0.930 29 H 0.194 0.806 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.167 0.833 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 31.640 -11.193 -2.749 33.674 hybrid contribution 1.147 2.353 -0.907 2.771 sum 32.788 -8.840 -3.656 34.155 Atomic orbital electron populations 1.69702 1.05096 1.25863 1.57442 1.24669 0.95241 0.97230 1.01899 0.86580 0.79410 0.84985 0.77791 1.21074 1.20151 1.21654 1.19028 0.80527 0.94737 1.43229 0.89152 1.42721 1.04141 1.02155 1.91228 1.20563 0.86504 0.89579 0.99148 1.22667 0.97219 0.95953 0.97173 0.89583 1.22609 0.93441 0.98054 1.01533 1.22183 0.99100 0.86906 0.95498 1.48386 1.10383 1.26636 1.49385 1.16564 0.82788 0.82839 0.78893 1.90859 1.79817 1.25027 1.45044 1.24224 0.98119 1.04033 1.11549 1.20577 0.90239 1.00138 0.97540 1.19469 0.95817 0.95966 1.01864 1.24983 1.01794 1.01502 1.04987 1.83235 0.97484 1.23641 1.47512 1.20370 0.90881 0.97450 1.00073 1.21559 0.97988 0.96446 0.99447 1.21544 0.97549 0.95270 1.01387 1.20542 0.90147 1.00069 0.98867 1.22390 0.78531 1.01683 0.98034 0.93040 0.80599 0.94767 0.95118 0.89461 0.89722 0.90850 0.90905 0.83270 0.90072 0.90339 0.91402 0.91110 0.91302 0.91590 0.90556 0.90519 0.90404 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.66 27.74 -169.99 -4.71 17.95 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 6 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 7 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.76 -17.81 5.26 -59.91 -0.31 -18.13 16 10 C 0.17 3.08 5.71 -4.05 -0.02 3.06 16 11 C -0.11 -1.59 3.10 -88.47 -0.27 -1.86 16 12 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.12 -1.22 6.42 -24.89 -0.16 -1.38 16 14 C 0.09 0.91 5.18 -3.07 -0.02 0.90 16 15 N -0.61 -8.79 3.33 -172.09 -0.57 -9.36 16 16 C 0.60 9.54 7.82 -12.89 -0.10 9.44 16 17 O -0.53 -10.41 17.09 5.18 0.09 -10.32 16 18 C -0.26 -3.30 6.36 -36.98 -0.24 -3.53 16 19 C -0.05 -0.60 9.80 -40.33 -0.40 -1.00 16 20 C -0.12 -1.13 5.75 -104.86 -0.60 -1.73 16 21 C -0.21 -1.85 6.15 -34.88 -0.21 -2.07 16 22 S 0.21 1.92 18.36 -107.50 -1.97 -0.06 16 23 C -0.05 -0.29 6.22 -27.34 -0.17 -0.46 16 24 C -0.12 -0.60 5.93 -26.61 -0.16 -0.75 16 25 C -0.12 -0.66 5.89 -26.68 -0.16 -0.82 16 26 C -0.06 -0.40 6.13 -27.09 -0.17 -0.57 16 27 C 0.12 1.84 6.08 -2.53 -0.02 1.83 16 28 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 29 H 0.36 8.45 5.39 -40.82 -0.22 8.23 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 34 H 0.07 0.66 6.99 -51.92 -0.36 0.30 16 35 H 0.07 0.67 6.82 -51.93 -0.35 0.32 16 36 H 0.15 1.74 8.05 -52.48 -0.42 1.32 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 1.29 8.00 -51.92 -0.42 0.88 16 46 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -34.61 374.25 -11.28 -45.89 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.27 Total: 3.18 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.94 Total: -6.00 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.11 Total: -56.28 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.97 Total: -0.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.61 -11.28 -45.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662723624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.830 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds