Wall clock time and date at job start Tue Mar 31 2020 18:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.89272 * 57.42252 * 11 10 9 13 13 C 1.55162 * 111.00826 * 181.34993 * 11 10 9 14 14 C 1.54323 * 102.94224 * 153.57556 * 13 11 10 15 15 N 1.47015 * 107.27232 * 337.80223 * 14 13 11 16 16 C 1.34776 * 125.64737 * 178.97563 * 15 14 13 17 17 O 1.21707 * 119.99980 * 179.97438 * 16 15 14 18 18 C 1.46586 * 120.00340 * 359.96607 * 16 15 14 19 19 C 1.36110 * 125.46039 * 179.71686 * 18 16 15 20 20 C 1.38275 * 114.09977 * 179.83149 * 19 18 16 21 21 C 1.35244 * 113.92687 * 0.44700 * 20 19 18 22 22 S 1.70752 * 111.10612 * 359.76057 * 21 20 19 23 23 C 1.51707 * 124.33478 * 179.78486 * 21 20 19 24 24 C 1.53095 * 108.75641 * 343.45264 * 23 21 20 25 25 C 1.53139 * 108.99799 * 50.06649 * 24 23 21 26 26 C 1.52331 * 123.07506 * 180.22078 * 20 19 18 27 27 C 1.47420 * 108.70545 * 358.94857 * 15 14 13 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 31 31 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 32 32 H 1.09005 * 110.71701 * 271.93654 * 13 11 10 33 33 H 1.09004 * 110.71556 * 35.20782 * 13 11 10 34 34 H 1.09008 * 109.87644 * 218.38849 * 14 13 11 35 35 H 1.09000 * 110.01166 * 97.30000 * 14 13 11 36 36 H 1.08003 * 122.95059 * 359.97438 * 19 18 16 37 37 H 1.08994 * 109.59443 * 103.22126 * 23 21 20 38 38 H 1.09005 * 109.58842 * 223.66805 * 23 21 20 39 39 H 1.09001 * 109.54555 * 290.21652 * 24 23 21 40 40 H 1.09003 * 109.55011 * 169.92576 * 24 23 21 41 41 H 1.09003 * 109.51132 * 169.23391 * 25 24 23 42 42 H 1.09005 * 109.55482 * 49.10745 * 25 24 23 43 43 H 1.09004 * 109.58096 * 282.66448 * 26 20 19 44 44 H 1.08999 * 109.58480 * 43.07941 * 26 20 19 45 45 H 1.09012 * 110.36673 * 265.28515 * 27 15 14 46 46 H 1.08997 * 110.37111 * 142.96298 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8984 -1.5811 0.8592 13 6 6.4279 -3.5132 -0.0331 14 6 7.7538 -3.0879 -0.6984 15 7 7.4847 -1.8613 -1.4629 16 6 8.3929 -1.1632 -2.1730 17 8 8.0561 -0.1576 -2.7702 18 6 9.7865 -1.6148 -2.2259 19 6 10.7901 -1.0008 -2.9102 20 6 12.0175 -1.6271 -2.7950 21 6 11.9946 -2.7422 -2.0302 22 16 10.4268 -3.0391 -1.4226 23 6 13.2051 -3.6128 -1.7503 24 6 14.2975 -3.2795 -2.7698 25 6 14.4962 -1.7616 -2.8093 26 6 13.2807 -1.1114 -3.4724 27 6 6.0568 -1.5217 -1.3247 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3620 0.0007 30 1 3.8486 -3.0425 0.8909 31 1 3.8493 -3.0422 -0.8891 32 1 6.6046 -3.8834 0.9769 33 1 5.9170 -4.2638 -0.6362 34 1 8.1008 -3.8740 -1.3690 35 1 8.5076 -2.8917 0.0640 36 1 10.6414 -0.1019 -3.4902 37 1 13.5727 -3.4150 -0.7434 38 1 12.9286 -4.6633 -1.8411 39 1 13.9965 -3.6337 -3.7558 40 1 15.2299 -3.7620 -2.4763 41 1 15.3929 -1.5266 -3.3828 42 1 14.6036 -1.3811 -1.7935 43 1 13.2596 -1.3710 -4.5309 44 1 13.3392 -0.0287 -3.3607 45 1 5.4878 -1.9270 -2.1616 46 1 5.9278 -0.4411 -1.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662723624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:58 Heat of formation + Delta-G solvation = -25.431226 kcal Electronic energy + Delta-G solvation = -25880.799474 eV Core-core repulsion = 22281.421741 eV Total energy + Delta-G solvation = -3599.377733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31280 -40.16529 -38.89594 -36.63732 -35.93416 -34.10350 -32.52759 -31.84579 -30.64593 -29.94760 -27.53787 -25.62898 -24.71714 -24.27470 -23.33312 -22.27455 -21.49597 -20.65555 -19.74386 -19.03733 -18.93326 -17.58691 -17.15514 -16.77068 -16.61346 -16.05728 -15.87948 -15.56854 -15.47608 -14.97222 -14.75475 -14.71617 -14.38401 -14.17491 -13.95215 -13.81193 -13.74237 -13.67625 -13.56944 -13.40291 -13.15377 -12.84517 -12.42077 -12.30775 -12.19302 -11.99274 -11.94751 -11.80664 -11.73681 -11.65967 -11.52663 -11.31477 -11.16776 -11.00421 -10.04363 -9.51305 -9.31240 -9.30540 -8.05241 -5.37547 -0.55037 0.43690 0.91664 1.23877 1.34512 1.37011 1.43047 1.74182 2.02823 2.44494 3.20074 3.27700 3.50390 3.55376 3.67783 3.78367 3.89623 3.98583 4.02514 4.12442 4.13787 4.26415 4.31496 4.42334 4.43135 4.55094 4.61494 4.66100 4.69994 4.76159 4.77436 4.84906 4.94188 4.98748 5.01693 5.03072 5.10544 5.12829 5.18529 5.23341 5.36113 5.37651 5.45691 5.52070 5.74700 6.19192 6.28254 6.87014 7.05754 7.82914 7.99022 9.16138 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.026631 B = 0.002407 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.136109 B =11630.529372 C =12452.269768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.062 4.062 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.296 1.296 7 C -0.229 4.229 8 H 0.064 0.936 9 N -0.763 5.763 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.089 0.911 13 C -0.105 4.105 14 C 0.083 3.917 15 N -0.614 5.614 16 C 0.593 3.407 17 O -0.586 6.586 18 C -0.301 4.301 19 C -0.056 4.056 20 C -0.135 4.135 21 C -0.205 4.205 22 S 0.265 5.735 23 C -0.052 4.052 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.059 4.059 27 C 0.114 3.886 28 H 0.257 0.743 29 H 0.363 0.637 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.623 -12.812 -2.182 38.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.223 1.223 7 C -0.360 4.360 8 H 0.082 0.918 9 N -0.408 5.408 10 C 0.040 3.960 11 C -0.120 4.120 12 H 0.107 0.893 13 C -0.143 4.143 14 C -0.040 4.040 15 N -0.346 5.346 16 C 0.384 3.616 17 O -0.469 6.469 18 C -0.421 4.421 19 C -0.091 4.091 20 C -0.147 4.147 21 C -0.324 4.324 22 S 0.537 5.463 23 C -0.091 4.091 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.098 4.098 27 C -0.009 4.009 28 H 0.066 0.934 29 H 0.195 0.805 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.138 0.862 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.153 0.847 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 35.651 -13.523 -1.578 38.163 hybrid contribution -0.020 2.907 -1.279 3.176 sum 35.631 -10.616 -2.858 37.289 Atomic orbital electron populations 1.69861 1.06853 1.26530 1.59932 1.25416 0.96047 1.00843 1.03018 0.85530 0.78367 0.80466 0.78134 1.20084 1.18838 1.22319 1.19061 0.82640 0.93568 1.40712 0.91770 1.42816 1.02651 1.04350 1.90989 1.20768 0.88525 0.87324 0.99390 1.22504 0.94936 0.98484 0.96048 0.89265 1.22654 0.92201 0.95719 1.03735 1.22483 0.99850 0.85689 0.95979 1.48439 1.09307 1.27613 1.49228 1.17085 0.84154 0.82241 0.78145 1.90806 1.81048 1.27537 1.47488 1.24034 0.96650 1.06992 1.14377 1.20706 0.91294 0.99893 0.97174 1.19641 0.95773 0.96450 1.02805 1.25501 1.02723 1.01023 1.03170 1.82808 0.96913 1.20654 1.45902 1.20582 0.89774 0.97651 1.01077 1.21585 0.98576 0.96078 0.99097 1.21555 0.97149 0.95572 1.01289 1.20618 0.89860 1.00213 0.99071 1.22233 0.80002 0.99881 0.98741 0.93362 0.80479 0.93646 0.95074 0.86188 0.88658 0.88813 0.88990 0.84732 0.88641 0.88711 0.91727 0.89100 0.89872 0.91775 0.90209 0.90640 0.91631 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.85 13.97 21.65 0.30 -63.55 16 2 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 3 Si 0.95 47.72 27.74 68.60 1.90 49.62 16 4 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.26 -12.55 6.52 99.48 0.65 -11.90 16 6 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 7 C -0.23 -13.14 10.47 84.03 0.88 -12.26 16 8 H 0.06 3.97 8.06 -2.91 -0.02 3.94 16 9 N -0.76 -35.73 5.26 -343.47 -1.81 -37.54 16 10 C 0.17 5.83 5.71 86.38 0.49 6.33 16 11 C -0.10 -2.70 3.10 -9.40 -0.03 -2.73 16 12 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.10 -1.78 6.42 31.78 0.20 -1.57 16 14 C 0.08 1.47 5.18 86.73 0.45 1.92 16 15 N -0.61 -17.25 3.33 -816.59 -2.72 -19.96 16 16 C 0.59 19.36 7.82 86.42 0.68 20.03 16 17 O -0.59 -24.58 17.09 -4.37 -0.07 -24.66 16 18 C -0.30 -7.57 6.36 23.95 0.15 -7.42 16 19 C -0.06 -1.33 9.80 21.78 0.21 -1.12 16 20 C -0.14 -2.40 5.75 -20.02 -0.12 -2.52 16 21 C -0.20 -2.98 6.15 25.32 0.16 -2.82 16 22 S 0.27 4.08 18.36 -56.49 -1.04 3.04 16 23 C -0.05 -0.42 6.22 30.20 0.19 -0.23 16 24 C -0.11 -0.77 5.93 30.67 0.18 -0.58 16 25 C -0.12 -0.98 5.89 30.63 0.18 -0.80 16 26 C -0.06 -0.74 6.13 30.36 0.19 -0.56 16 27 C 0.11 3.68 6.08 86.86 0.53 4.21 16 28 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 29 H 0.36 16.80 5.39 -92.71 -0.50 16.30 16 30 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.09 1.47 8.04 -2.39 -0.02 1.45 16 34 H 0.09 1.34 6.99 -2.38 -0.02 1.32 16 35 H 0.09 1.33 6.82 -2.39 -0.02 1.31 16 36 H 0.13 3.44 8.05 -2.91 -0.02 3.41 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.06 0.50 8.10 -2.39 -0.02 0.48 16 40 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.06 0.57 8.10 -2.38 -0.02 0.55 16 43 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 2.24 8.00 -2.38 -0.02 2.22 16 46 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 Total: -1.00 -79.16 374.25 1.80 -77.36 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.42 Total: 19.07 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 4.81 Total: -3.39 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -4.22 Total: -121.04 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.07 Total: -24.66 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.90 Total: 49.62 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.04 Total: 3.04 kcal Total: -79.16 1.80 -77.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662723624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.925 kcal (2) G-P(sol) polarization free energy of solvation -79.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds