Wall clock time and date at job start Tue Mar 31 2020 17:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99842 * 2 1 4 4 C 1.34771 * 120.00024 * 179.97438 * 2 1 3 5 5 O 1.21516 * 119.99831 * 359.97438 * 4 2 1 6 6 O 1.34638 * 119.99966 * 179.97438 * 4 2 1 7 7 C 1.45202 * 116.99832 * 179.97438 * 6 4 2 8 8 H 1.08998 * 110.64728 * 333.14681 * 7 6 4 9 9 C 1.55165 * 110.71678 * 96.48225 * 7 6 4 10 10 C 1.55123 * 101.48546 * 82.69456 * 9 7 6 11 11 N 1.47423 * 104.72583 * 37.29521 * 10 9 7 12 12 S 1.65598 * 125.65328 * 155.81632 * 11 10 9 13 13 O 1.42095 * 104.28128 * 153.61698 * 12 11 10 14 14 O 1.42104 * 104.27651 * 25.76109 * 12 11 10 15 15 C 1.81399 * 104.45041 * 269.69300 * 12 11 10 16 16 C 1.52997 * 109.47147 * 179.97438 * 15 12 11 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 C 1.47026 * 108.70201 * 335.55444 * 11 10 9 27 27 H 1.09007 * 109.46708 * 269.99916 * 1 2 3 28 28 H 1.08994 * 109.47369 * 30.00090 * 1 2 3 29 29 H 1.08999 * 109.47506 * 150.00413 * 1 2 3 30 30 H 1.09000 * 109.46848 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47062 * 300.00183 * 3 2 1 32 32 H 1.08996 * 109.47593 * 59.99727 * 3 2 1 33 33 H 1.09003 * 110.99963 * 200.93544 * 9 7 6 34 34 H 1.08997 * 111.00086 * 324.78311 * 9 7 6 35 35 H 1.08998 * 110.49813 * 278.45273 * 10 9 7 36 36 H 1.09000 * 110.34297 * 156.05572 * 10 9 7 37 37 H 1.09001 * 109.47190 * 59.99892 * 15 12 11 38 38 H 1.09004 * 109.47089 * 299.99759 * 15 12 11 39 39 H 1.09001 * 109.46832 * 60.00079 * 16 15 12 40 40 H 1.09001 * 109.47502 * 299.99601 * 16 15 12 41 41 H 1.09001 * 109.47002 * 60.00426 * 17 16 15 42 42 H 1.08993 * 109.46955 * 299.99989 * 17 16 15 43 43 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 44 44 H 1.08995 * 109.88329 * 120.70317 * 26 11 10 45 45 H 1.09006 * 109.88222 * 241.71714 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5313 -2.2195 0.0015 6 8 3.4853 -1.1671 0.0000 7 6 4.1445 -2.4609 0.0012 8 1 3.5083 -3.2160 0.4630 9 6 4.5391 -2.8772 -1.4405 10 6 5.8774 -2.1152 -1.6267 11 7 6.5359 -2.1872 -0.3097 12 16 8.1647 -2.0650 -0.0370 13 8 8.2615 -1.5722 1.2923 14 8 8.6481 -1.3058 -1.1367 15 6 8.7684 -3.7731 -0.1282 16 6 10.2796 -3.7933 0.1095 17 6 10.7887 -5.2342 0.0331 18 6 12.2774 -5.2540 0.2667 19 1 12.8073 -4.3312 0.4515 20 6 12.9627 -6.4502 0.2454 21 7 12.3173 -7.5739 0.0208 22 14 14.8078 -6.4748 0.5356 23 1 15.3020 -7.8733 0.4613 24 1 15.1052 -5.9149 1.8784 25 1 15.4833 -5.6559 -0.5029 26 6 5.5064 -2.3792 0.7223 27 1 -0.3633 0.0000 1.0278 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5137 30 1 3.2691 1.0695 -0.0005 31 1 1.9341 1.8403 -0.8900 32 1 1.9342 1.8403 0.8899 33 1 4.6864 -3.9550 -1.5094 34 1 3.7953 -2.5392 -2.1621 35 1 5.6905 -1.0770 -1.9011 36 1 6.4898 -2.6044 -2.3842 37 1 8.5506 -4.1833 -1.1144 38 1 8.2724 -4.3750 0.6333 39 1 10.4978 -3.3830 1.0955 40 1 10.7754 -3.1916 -0.6523 41 1 10.5705 -5.6448 -0.9527 42 1 10.2930 -5.8355 0.7951 43 1 11.3591 -7.5611 -0.1295 44 1 5.6944 -3.3051 1.2657 45 1 5.5125 -1.5362 1.4134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664045613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:56 Heat of formation + Delta-G solvation = -152.317703 kcal Electronic energy + Delta-G solvation = -27034.966649 eV Core-core repulsion = 22986.944692 eV Total energy + Delta-G solvation = -4048.021958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03668 -38.82830 -37.01819 -36.55041 -35.90529 -35.84526 -34.94773 -32.30514 -30.82506 -29.38283 -28.54029 -27.50253 -26.59935 -23.58114 -22.84492 -22.29534 -20.91017 -20.61043 -19.01007 -18.57547 -17.85743 -17.50918 -17.00112 -16.81412 -16.25162 -15.96237 -15.54116 -14.93536 -14.65374 -14.50773 -14.37275 -13.92407 -13.75549 -13.46573 -13.29965 -13.09318 -13.06252 -12.95909 -12.56462 -12.52768 -12.11178 -12.08530 -12.06447 -11.97603 -11.91469 -11.61230 -11.49051 -11.33225 -10.98671 -10.83011 -10.81809 -10.80843 -10.15373 -10.12117 -9.85150 -9.32230 -9.18131 -8.59380 -8.38415 -6.42159 -4.12141 0.27861 1.68580 2.39545 2.62606 3.36664 3.42930 3.44622 3.63266 3.89536 3.90714 4.03355 4.35682 4.50946 4.60740 4.64877 4.72386 4.84320 4.92240 4.96593 5.01776 5.05295 5.07875 5.15546 5.18336 5.29293 5.32477 5.35718 5.39712 5.47405 5.68311 5.72362 5.80526 5.85950 6.03171 6.04251 6.17875 6.28372 6.68896 6.80261 7.24355 7.36403 7.84874 8.11577 8.39696 8.81445 9.60112 10.98510 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.031652 B = 0.002141 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.408905 B =13077.825197 C =13481.983877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.604 5.604 3 C 0.079 3.921 4 C 0.647 3.353 5 O -0.570 6.570 6 O -0.354 6.354 7 C 0.096 3.904 8 H 0.112 0.888 9 C -0.144 4.144 10 C 0.124 3.876 11 N -1.018 6.018 12 S 2.617 3.383 13 O -0.955 6.955 14 O -0.953 6.953 15 C -0.611 4.611 16 C -0.099 4.099 17 C 0.018 3.982 18 C -0.608 4.608 19 H 0.052 0.948 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 1.070 2.930 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.287 1.287 26 C 0.124 3.876 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.268 0.732 44 H 0.090 0.910 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.079 15.535 -1.833 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.345 5.345 3 C -0.064 4.064 4 C 0.402 3.598 5 O -0.459 6.459 6 O -0.268 6.268 7 C 0.039 3.961 8 H 0.129 0.871 9 C -0.183 4.183 10 C -0.001 4.001 11 N -0.855 5.855 12 S 2.714 3.286 13 O -0.945 6.945 14 O -0.944 6.944 15 C -0.743 4.743 16 C -0.138 4.138 17 C -0.021 4.021 18 C -0.646 4.646 19 H 0.070 0.930 20 C -0.189 4.189 21 N -0.547 5.547 22 Si 0.898 3.102 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.213 1.213 26 C -0.001 4.001 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.357 15.020 -1.554 27.813 hybrid contribution -1.613 0.350 -0.211 1.664 sum -24.970 15.369 -1.765 29.374 Atomic orbital electron populations 1.21672 0.76386 1.03652 1.02394 1.46508 1.06965 1.04379 1.76652 1.21868 0.98139 0.84400 1.01999 1.18050 0.81341 0.84213 0.76221 1.90995 1.68703 1.30352 1.55872 1.86323 1.18607 1.35562 1.86326 1.23724 0.92451 0.82337 0.97564 0.87060 1.23292 0.97426 1.01817 0.95803 1.22016 0.93001 1.00919 0.84179 1.58870 1.23142 1.89797 1.13693 1.05004 0.71335 0.78127 0.74109 1.93568 1.84576 1.78386 1.37999 1.93574 1.78309 1.67780 1.54734 1.30626 1.09389 1.23162 1.11129 1.21368 0.87087 1.03519 1.01846 1.19183 0.96902 0.89486 0.96487 1.22067 0.92788 0.95872 1.53859 0.92987 1.25897 1.06893 0.92151 0.93915 1.70799 1.11047 1.28090 1.44778 0.83531 0.74136 0.76002 0.76566 1.20717 1.21317 1.21325 1.21788 0.84709 1.03225 0.90423 0.92300 0.90488 0.90108 0.89277 0.91745 0.91741 0.88361 0.89293 0.90810 0.90067 0.85459 0.85468 0.91388 0.91386 0.97032 0.97025 0.92171 0.89172 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 10.48 59.85 0.63 1.16 16 2 N -0.60 -4.64 3.27 -195.40 -0.64 -5.28 16 3 C 0.08 0.41 10.70 59.84 0.64 1.05 16 4 C 0.65 6.80 8.40 54.05 0.45 7.25 16 5 O -0.57 -7.42 15.17 -19.28 -0.29 -7.71 16 6 O -0.35 -3.55 8.52 -40.32 -0.34 -3.89 16 7 C 0.10 0.88 3.33 -24.89 -0.08 0.80 16 8 H 0.11 1.00 7.14 -51.93 -0.37 0.63 16 9 C -0.14 -1.16 6.83 -24.46 -0.17 -1.33 16 10 C 0.12 1.19 6.89 -2.41 -0.02 1.17 16 11 N -1.02 -11.58 3.62 -111.29 -0.40 -11.98 16 12 S 2.62 38.62 5.65 -107.50 -0.61 38.01 16 13 O -0.95 -16.64 17.60 -57.54 -1.01 -17.66 16 14 O -0.95 -16.66 17.60 -57.54 -1.01 -17.68 16 15 C -0.61 -9.27 6.18 37.16 0.23 -9.04 16 16 C -0.10 -2.01 5.16 -26.73 -0.14 -2.15 16 17 C 0.02 0.45 4.28 -27.88 -0.12 0.33 16 18 C -0.61 -17.37 9.11 -34.44 -0.31 -17.68 16 19 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 20 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 21 N -0.91 -27.78 13.65 55.43 0.76 -27.02 16 22 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.12 1.21 6.66 -3.06 -0.02 1.19 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 29 H 0.08 0.52 7.42 -51.93 -0.39 0.14 16 30 H 0.09 0.56 6.81 -51.93 -0.35 0.20 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.13 1.71 8.14 -51.92 -0.42 1.28 16 38 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 42 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 43 H 0.27 8.07 7.22 -40.82 -0.29 7.77 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -38.16 386.00 -9.18 -47.34 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.35 Total: -3.29 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 1.00 Total: -16.90 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.29 Total: -44.28 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -2.66 Total: -46.94 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Atomic # 16 Polarization: 38.62 SS G_CDS: -0.61 Total: 38.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.16 -9.18 -47.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664045613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.978 kcal (2) G-P(sol) polarization free energy of solvation -38.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds