Wall clock time and date at job start Tue Mar 31 2020 17:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99842 * 2 1 4 4 C 1.34771 * 120.00024 * 179.97438 * 2 1 3 5 5 O 1.21516 * 119.99831 * 359.97438 * 4 2 1 6 6 O 1.34638 * 119.99966 * 179.97438 * 4 2 1 7 7 C 1.45202 * 116.99832 * 179.97438 * 6 4 2 8 8 H 1.08998 * 110.64728 * 333.14681 * 7 6 4 9 9 C 1.55165 * 110.71678 * 96.48225 * 7 6 4 10 10 C 1.55123 * 101.48546 * 82.69456 * 9 7 6 11 11 N 1.47423 * 104.72583 * 37.29521 * 10 9 7 12 12 S 1.65598 * 125.65328 * 155.81632 * 11 10 9 13 13 O 1.42095 * 104.28128 * 153.61698 * 12 11 10 14 14 O 1.42104 * 104.27651 * 25.76109 * 12 11 10 15 15 C 1.81399 * 104.45041 * 269.69300 * 12 11 10 16 16 C 1.52997 * 109.47147 * 179.97438 * 15 12 11 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 C 1.47026 * 108.70201 * 335.55444 * 11 10 9 27 27 H 1.09007 * 109.46708 * 269.99916 * 1 2 3 28 28 H 1.08994 * 109.47369 * 30.00090 * 1 2 3 29 29 H 1.08999 * 109.47506 * 150.00413 * 1 2 3 30 30 H 1.09000 * 109.46848 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47062 * 300.00183 * 3 2 1 32 32 H 1.08996 * 109.47593 * 59.99727 * 3 2 1 33 33 H 1.09003 * 110.99963 * 200.93544 * 9 7 6 34 34 H 1.08997 * 111.00086 * 324.78311 * 9 7 6 35 35 H 1.08998 * 110.49813 * 278.45273 * 10 9 7 36 36 H 1.09000 * 110.34297 * 156.05572 * 10 9 7 37 37 H 1.09001 * 109.47190 * 59.99892 * 15 12 11 38 38 H 1.09004 * 109.47089 * 299.99759 * 15 12 11 39 39 H 1.09001 * 109.46832 * 60.00079 * 16 15 12 40 40 H 1.09001 * 109.47502 * 299.99601 * 16 15 12 41 41 H 1.09001 * 109.47002 * 60.00426 * 17 16 15 42 42 H 1.08993 * 109.46955 * 299.99989 * 17 16 15 43 43 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 44 44 H 1.08995 * 109.88329 * 120.70317 * 26 11 10 45 45 H 1.09006 * 109.88222 * 241.71714 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5313 -2.2195 0.0015 6 8 3.4853 -1.1671 0.0000 7 6 4.1445 -2.4609 0.0012 8 1 3.5083 -3.2160 0.4630 9 6 4.5391 -2.8772 -1.4405 10 6 5.8774 -2.1152 -1.6267 11 7 6.5359 -2.1872 -0.3097 12 16 8.1647 -2.0650 -0.0370 13 8 8.2615 -1.5722 1.2923 14 8 8.6481 -1.3058 -1.1367 15 6 8.7684 -3.7731 -0.1282 16 6 10.2796 -3.7933 0.1095 17 6 10.7887 -5.2342 0.0331 18 6 12.2774 -5.2540 0.2667 19 1 12.8073 -4.3312 0.4515 20 6 12.9627 -6.4502 0.2454 21 7 12.3173 -7.5739 0.0208 22 14 14.8078 -6.4748 0.5356 23 1 15.3020 -7.8733 0.4613 24 1 15.1052 -5.9149 1.8784 25 1 15.4833 -5.6559 -0.5029 26 6 5.5064 -2.3792 0.7223 27 1 -0.3633 0.0000 1.0278 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5137 30 1 3.2691 1.0695 -0.0005 31 1 1.9341 1.8403 -0.8900 32 1 1.9342 1.8403 0.8899 33 1 4.6864 -3.9550 -1.5094 34 1 3.7953 -2.5392 -2.1621 35 1 5.6905 -1.0770 -1.9011 36 1 6.4898 -2.6044 -2.3842 37 1 8.5506 -4.1833 -1.1144 38 1 8.2724 -4.3750 0.6333 39 1 10.4978 -3.3830 1.0955 40 1 10.7754 -3.1916 -0.6523 41 1 10.5705 -5.6448 -0.9527 42 1 10.2930 -5.8355 0.7951 43 1 11.3591 -7.5611 -0.1295 44 1 5.6944 -3.3051 1.2657 45 1 5.5125 -1.5362 1.4134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664045613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:54 Heat of formation + Delta-G solvation = -180.187392 kcal Electronic energy + Delta-G solvation = -27036.175170 eV Core-core repulsion = 22986.944692 eV Total energy + Delta-G solvation = -4049.230478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.76924 -39.57963 -38.31605 -37.26579 -37.14335 -36.78818 -36.63554 -34.25040 -31.62890 -30.11468 -29.32631 -28.98322 -27.16159 -25.49872 -23.83561 -22.97357 -22.59720 -21.33161 -20.09382 -19.24769 -19.17456 -18.71371 -18.28973 -17.56467 -17.38893 -17.19974 -16.42877 -15.94769 -15.67848 -15.56886 -15.42427 -15.21709 -15.13938 -14.76922 -14.20340 -13.94706 -13.86918 -13.65026 -13.44655 -13.42197 -13.33943 -13.26381 -13.25783 -13.16975 -13.04890 -12.90648 -12.61251 -12.55066 -12.41184 -12.07448 -11.95426 -11.88457 -11.77468 -11.56709 -11.53761 -10.73081 -10.56975 -10.07597 -9.87603 -8.71888 -6.43039 -0.92408 1.05730 1.52367 1.56130 1.60242 1.63751 1.79900 2.54586 2.70038 2.78961 2.92923 3.12684 3.27524 3.48377 3.63295 3.79284 3.94282 4.16062 4.22654 4.24951 4.27090 4.32997 4.43271 4.48344 4.49396 4.54265 4.67525 4.72021 4.77291 4.81948 4.85779 4.88342 4.93551 4.97864 5.00734 5.23780 5.25086 5.32436 5.36330 5.37412 5.94362 6.15091 6.15470 6.54531 7.12731 7.37872 8.69557 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.031652 B = 0.002141 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.408905 B =13077.825197 C =13481.983877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.602 5.602 3 C 0.076 3.924 4 C 0.639 3.361 5 O -0.603 6.603 6 O -0.358 6.358 7 C 0.094 3.906 8 H 0.114 0.886 9 C -0.135 4.135 10 C 0.115 3.885 11 N -1.013 6.013 12 S 2.645 3.355 13 O -0.983 6.983 14 O -0.981 6.981 15 C -0.609 4.609 16 C -0.100 4.100 17 C 0.015 3.985 18 C -0.630 4.630 19 H 0.051 0.949 20 C -0.038 4.038 21 N -0.935 5.935 22 Si 1.116 2.884 23 H -0.282 1.282 24 H -0.269 1.269 25 H -0.269 1.269 26 C 0.117 3.883 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.257 0.743 44 H 0.112 0.888 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.846 16.538 -2.007 30.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.343 5.343 3 C -0.066 4.066 4 C 0.394 3.606 5 O -0.494 6.494 6 O -0.272 6.272 7 C 0.037 3.963 8 H 0.132 0.868 9 C -0.174 4.174 10 C -0.009 4.009 11 N -0.852 5.852 12 S 2.742 3.258 13 O -0.973 6.973 14 O -0.972 6.972 15 C -0.740 4.740 16 C -0.140 4.140 17 C -0.023 4.023 18 C -0.667 4.667 19 H 0.070 0.930 20 C -0.235 4.235 21 N -0.572 5.572 22 Si 0.937 3.063 23 H -0.207 1.207 24 H -0.194 1.194 25 H -0.194 1.194 26 C -0.007 4.007 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.067 0.933 44 H 0.130 0.870 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.136 16.067 -1.728 29.046 hybrid contribution -1.487 0.101 -0.164 1.500 sum -25.623 16.168 -1.892 30.357 Atomic orbital electron populations 1.21853 0.75100 1.04429 1.03069 1.46795 1.07899 1.04298 1.75301 1.22019 0.97235 0.83541 1.03790 1.18315 0.81322 0.84702 0.76281 1.90964 1.69186 1.31658 1.57638 1.86325 1.18575 1.35993 1.86320 1.23775 0.91955 0.82231 0.98293 0.86779 1.23287 0.96405 1.02597 0.95088 1.22243 0.93838 1.01411 0.83420 1.58515 1.22103 1.89492 1.15117 1.03899 0.71760 0.77298 0.72796 1.93528 1.85478 1.78870 1.39433 1.93534 1.79546 1.68533 1.55559 1.30562 1.05797 1.24506 1.13100 1.21195 0.90748 1.00151 1.01873 1.19129 0.95491 0.92418 0.95284 1.22567 0.94816 0.95965 1.53390 0.93017 1.27424 1.11170 0.91870 0.93061 1.70923 1.10631 1.28961 1.46701 0.82952 0.69184 0.76372 0.77823 1.20700 1.19427 1.19425 1.22005 0.84549 1.04136 0.90059 0.91685 0.87453 0.91563 0.90549 0.89767 0.90106 0.86711 0.88778 0.90975 0.88907 0.83483 0.83460 0.91567 0.91558 0.98111 0.98112 0.93304 0.87002 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 10.48 127.77 1.34 2.21 16 2 N -0.60 -8.45 3.27 ******* -3.28 -11.73 16 3 C 0.08 0.65 10.70 127.77 1.37 2.01 16 4 C 0.64 12.98 8.40 129.79 1.09 14.07 16 5 O -0.60 -15.52 15.17 19.79 0.30 -15.22 16 6 O -0.36 -6.87 8.52 -55.47 -0.47 -7.34 16 7 C 0.09 1.60 3.33 31.79 0.11 1.71 16 8 H 0.11 1.91 7.14 -2.39 -0.02 1.90 16 9 C -0.13 -1.91 6.83 32.06 0.22 -1.69 16 10 C 0.12 2.01 6.89 86.93 0.60 2.61 16 11 N -1.01 -21.46 3.62 -506.02 -1.83 -23.29 16 12 S 2.65 75.19 5.65 -56.49 -0.32 74.87 16 13 O -0.98 -33.54 17.60 -127.65 -2.25 -35.79 16 14 O -0.98 -33.49 17.60 -127.65 -2.25 -35.73 16 15 C -0.61 -17.61 6.18 71.98 0.44 -17.16 16 16 C -0.10 -4.05 5.16 30.60 0.16 -3.90 16 17 C 0.02 0.76 4.28 29.85 0.13 0.89 16 18 C -0.63 -36.17 9.11 25.60 0.23 -35.93 16 19 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 20 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 21 N -0.94 -57.54 13.65 21.45 0.29 -57.25 16 22 Si 1.12 50.35 29.90 68.60 2.05 52.41 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.12 2.12 6.66 86.73 0.58 2.69 16 27 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.11 0.31 8.07 -2.39 -0.02 0.29 16 29 H 0.07 0.82 7.42 -2.39 -0.02 0.80 16 30 H 0.08 0.87 6.81 -2.39 -0.02 0.85 16 31 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.15 3.66 8.14 -2.39 -0.02 3.64 16 38 H 0.15 3.66 8.14 -2.39 -0.02 3.64 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.00 0.03 8.01 -2.39 -0.02 0.01 16 42 H 0.00 0.03 8.01 -2.39 -0.02 0.01 16 43 H 0.26 15.84 7.22 -92.71 -0.67 15.17 16 44 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.58 8.08 -2.38 -0.02 1.56 16 Total: -1.00 -82.42 386.00 0.04 -82.38 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.07 Total: 10.89 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 6.72 Total: -34.20 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -4.82 Total: -92.27 kcal Atomic # 8 Polarization: -89.42 SS G_CDS: -4.67 Total: -94.08 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.41 kcal Atomic # 16 Polarization: 75.19 SS G_CDS: -0.32 Total: 74.87 kcal Total: -82.42 0.04 -82.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664045613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.807 kcal (2) G-P(sol) polarization free energy of solvation -82.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds