Wall clock time and date at job start Tue Mar 31 2020 18:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 119.99783 * 2 1 4 4 H 1.48495 * 109.47041 * 269.99609 * 3 2 1 5 5 H 1.48498 * 109.47281 * 30.00193 * 3 2 1 6 6 H 1.48507 * 109.46826 * 149.99836 * 3 2 1 7 7 C 1.38796 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99914 * 359.97438 * 7 2 1 9 9 S 1.76204 * 120.00086 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00027 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46991 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00337 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00196 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00237 * 180.02562 * 13 11 10 15 15 C 1.53514 * 114.17103 * 154.99794 * 14 13 11 16 16 N 1.47470 * 87.93187 * 87.62295 * 15 14 13 17 17 C 1.46901 * 111.00419 * 138.70507 * 16 15 14 18 18 C 1.52992 * 109.47859 * 170.00112 * 17 16 15 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.38233 * 120.00099 * 269.72808 * 20 19 18 22 22 C 1.38239 * 119.99655 * 179.76882 * 21 20 19 23 23 C 1.38230 * 120.00228 * 0.50243 * 22 21 20 24 24 C 1.38238 * 119.99995 * 359.75228 * 23 22 21 25 25 C 1.38238 * 120.00072 * 359.97438 * 24 23 22 26 26 C 1.47485 * 87.83976 * 27.01193 * 16 15 14 27 27 H 0.97000 * 120.00473 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47214 * 59.99852 * 10 9 7 29 29 H 1.08996 * 109.47061 * 299.99995 * 10 9 7 30 30 H 0.96996 * 119.99567 * 359.97438 * 13 11 10 31 31 H 1.09000 * 113.25475 * 22.04917 * 14 13 11 32 32 H 1.09001 * 113.47213 * 332.85749 * 15 14 13 33 33 H 1.08994 * 113.47633 * 202.39279 * 15 14 13 34 34 H 1.09002 * 109.46980 * 49.99771 * 17 16 15 35 35 H 1.09001 * 109.46628 * 290.00192 * 17 16 15 36 36 H 1.09002 * 109.47103 * 59.99734 * 18 17 16 37 37 H 1.08998 * 109.46862 * 300.00546 * 18 17 16 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 40 40 H 1.08003 * 119.99927 * 359.97438 * 21 20 19 41 41 H 1.08000 * 119.99431 * 180.23215 * 22 21 20 42 42 H 1.07997 * 120.00220 * 179.73036 * 23 22 21 43 43 H 1.08002 * 119.99952 * 179.97438 * 24 23 22 44 44 H 1.07991 * 120.00062 * 179.97438 * 25 24 23 45 45 H 1.08995 * 113.47551 * 87.74830 * 26 16 15 46 46 H 1.08998 * 113.47679 * 218.22920 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7723 -1.2021 0.0001 10 6 4.0866 -2.9846 -0.0001 11 6 5.5730 -3.2326 -0.0002 12 8 6.3440 -2.2964 0.0003 13 7 6.0456 -4.4947 -0.0010 14 6 7.4907 -4.7358 -0.0005 15 6 7.9015 -6.0917 0.5906 16 7 7.7267 -6.6708 -0.7543 17 6 8.8023 -7.6231 -1.0615 18 6 8.4595 -8.3835 -2.3441 19 6 9.5801 -9.3748 -2.6642 20 6 9.2421 -10.1242 -3.9272 21 6 8.5346 -11.3098 -3.8591 22 6 8.2205 -11.9948 -5.0181 23 6 8.6229 -11.4995 -6.2443 24 6 9.3350 -10.3166 -6.3120 25 6 9.6442 -9.6287 -5.1535 26 6 8.0281 -5.3370 -1.3068 27 1 -0.4851 0.8400 0.0004 28 1 3.6439 -3.4315 -0.8904 29 1 3.6433 -3.4318 0.8895 30 1 5.4290 -5.2435 -0.0011 31 1 8.0677 -3.8914 0.3763 32 1 7.1942 -6.4775 1.3248 33 1 8.9324 -6.1170 0.9436 34 1 8.9085 -8.3291 -0.2379 35 1 9.7383 -7.0818 -1.1991 36 1 8.3533 -7.6774 -3.1677 37 1 7.5234 -8.9246 -2.2064 38 1 9.6868 -10.0809 -1.8407 39 1 10.5159 -8.8332 -2.8020 40 1 8.2243 -11.6993 -2.9007 41 1 7.6644 -12.9191 -4.9651 42 1 8.3812 -12.0368 -7.1494 43 1 9.6497 -9.9298 -7.2700 44 1 10.2009 -8.7048 -5.2064 45 1 9.0928 -5.1609 -1.4601 46 1 7.4280 -5.0832 -2.1807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665099975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:39 Heat of formation + Delta-G solvation = -8.705073 kcal Electronic energy + Delta-G solvation = -24315.068619 eV Core-core repulsion = 20716.416186 eV Total energy + Delta-G solvation = -3598.652432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64955 -40.20632 -39.88025 -36.08364 -34.71108 -34.63314 -32.16984 -31.75180 -30.76444 -28.53869 -27.83229 -26.96241 -25.39591 -23.44940 -22.67000 -22.21116 -21.62133 -20.76805 -19.86882 -18.09150 -17.65991 -17.33625 -17.06486 -16.86827 -16.58182 -16.36166 -16.04341 -15.90262 -15.71458 -15.25001 -14.94030 -14.76152 -14.40041 -14.17413 -14.06870 -14.00138 -13.86582 -13.50326 -13.33539 -13.02233 -12.97821 -12.72032 -12.64133 -12.49595 -12.16337 -11.98797 -11.86604 -11.75513 -11.55836 -11.42599 -11.16576 -11.02469 -10.53702 -10.11556 -9.85874 -9.81022 -9.56452 -8.98950 -8.50907 -6.21835 0.46546 0.51059 0.98861 1.32209 1.47083 1.52938 1.56015 2.18625 2.26223 2.71283 2.85326 2.87225 3.04487 3.46447 3.78264 3.82369 3.86852 3.92108 4.06268 4.16757 4.23152 4.25321 4.30639 4.33040 4.46660 4.47493 4.50535 4.54992 4.65123 4.70077 4.71391 4.79010 4.82302 4.85516 4.87273 5.06628 5.19463 5.20440 5.35164 5.43287 5.51027 5.59439 5.64477 5.71245 5.75352 6.05795 6.12079 6.15513 6.47783 6.94049 7.18577 8.61511 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.001691 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.090527 B =16558.713774 C =17392.352286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.172 6.172 10 C -0.112 4.112 11 C 0.540 3.460 12 O -0.561 6.561 13 N -0.688 5.688 14 C 0.106 3.894 15 C 0.005 3.995 16 N -0.482 5.482 17 C 0.020 3.980 18 C -0.095 4.095 19 C -0.074 4.074 20 C -0.091 4.091 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.011 4.011 27 H 0.277 0.723 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.417 0.583 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.095 0.905 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.773 -25.679 -5.965 35.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.054 5.946 10 C -0.263 4.263 11 C 0.326 3.674 12 O -0.439 6.439 13 N -0.341 5.341 14 C 0.000 4.000 15 C -0.125 4.125 16 N -0.205 5.205 17 C -0.108 4.108 18 C -0.133 4.133 19 C -0.112 4.112 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.141 4.141 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.255 0.745 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.146 0.854 45 H 0.113 0.887 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.271 -24.446 -6.142 34.992 hybrid contribution -0.861 -0.356 -0.127 0.940 sum 23.411 -24.802 -6.269 34.677 Atomic orbital electron populations 1.70019 1.07324 1.29027 1.49127 1.25581 0.95292 1.02306 0.92873 0.85852 0.80695 0.79514 0.80213 1.18718 1.18306 1.15973 1.22476 0.90336 0.96697 1.58290 0.92032 1.84660 1.06331 1.06007 1.97584 1.23261 0.95874 0.99702 1.07418 1.19932 0.89351 0.83264 0.74888 1.90681 1.59192 1.43723 1.50302 1.45295 1.07501 1.06764 1.74501 1.22053 0.81596 0.98573 0.97801 1.24213 1.03067 0.91498 0.93675 1.68903 1.40598 1.05643 1.05320 1.22745 0.93033 0.96364 0.98643 1.21315 0.98270 0.97146 0.96613 1.20564 0.98689 0.97567 0.94352 1.20119 0.97943 0.95468 0.95561 1.21321 0.98955 0.95374 0.99229 1.21454 0.99967 1.00633 0.92698 1.21449 0.98850 0.96801 0.98560 1.21443 0.98725 0.95690 0.99007 1.21307 1.00957 1.00420 0.92421 1.24423 1.01279 0.90032 0.98368 0.91372 0.87093 0.86763 0.74544 0.88361 0.88467 0.87867 0.89621 0.92417 0.93232 0.92314 0.89905 0.90274 0.85033 0.84620 0.84676 0.84807 0.85358 0.88715 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.09 13.97 21.65 0.30 -55.79 16 2 C 0.04 2.64 5.50 84.86 0.47 3.11 16 3 Si 0.92 45.10 27.74 68.60 1.90 47.00 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 7 C -0.53 -31.07 10.04 67.95 0.68 -30.39 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 9 S -0.17 -8.72 18.55 -56.49 -1.05 -9.77 16 10 C -0.11 -4.22 6.16 71.23 0.44 -3.79 16 11 C 0.54 18.42 7.85 87.65 0.69 19.11 16 12 O -0.56 -23.53 15.45 -3.03 -0.05 -23.58 16 13 N -0.69 -16.53 5.39 -441.69 -2.38 -18.90 16 14 C 0.11 2.11 4.60 45.45 0.21 2.32 16 15 C 0.00 0.06 7.45 83.58 0.62 0.68 16 16 N -0.48 -7.24 6.33 -927.94 -5.88 -13.12 16 17 C 0.02 0.23 4.82 86.30 0.42 0.64 16 18 C -0.10 -1.22 5.52 30.59 0.17 -1.05 16 19 C -0.07 -0.77 5.35 29.85 0.16 -0.61 16 20 C -0.09 -1.27 5.13 -19.86 -0.10 -1.37 16 21 C -0.13 -1.81 9.70 22.27 0.22 -1.59 16 22 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 23 C -0.14 -1.84 10.05 22.27 0.22 -1.62 16 24 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 25 C -0.13 -1.91 9.70 22.27 0.22 -1.69 16 26 C -0.01 -0.19 7.52 83.58 0.63 0.44 16 27 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 30 H 0.42 8.20 8.76 -92.71 -0.81 7.39 16 31 H 0.10 2.25 7.45 -2.39 -0.02 2.23 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 0.94 7.91 -2.39 -0.02 0.92 16 34 H 0.09 0.77 8.08 -2.39 -0.02 0.76 16 35 H 0.06 0.54 7.30 -2.39 -0.02 0.52 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 39 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 40 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.13 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.13 1.50 8.06 -2.92 -0.02 1.48 16 45 H 0.09 1.30 7.42 -2.39 -0.02 1.29 16 46 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.55 396.42 -1.55 -75.10 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.11 Total: 17.93 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 5.48 Total: -18.87 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -7.95 Total: -87.81 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -73.55 -1.55 -75.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665099975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.391 kcal (2) G-P(sol) polarization free energy of solvation -73.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds