Wall clock time and date at job start Tue Mar 31 2020 17:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99879 * 2 1 4 4 C 1.52993 * 109.47115 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47765 * 64.99762 * 4 3 2 6 6 C 1.36944 * 120.00047 * 270.00376 * 5 4 3 7 7 H 1.07996 * 120.00270 * 142.63982 * 6 5 4 8 8 C 1.38809 * 119.99692 * 322.63665 * 6 5 4 9 9 N 1.31615 * 120.00068 * 157.14293 * 8 6 5 10 10 Si 1.86804 * 120.00322 * 337.14735 * 8 6 5 11 11 H 1.48504 * 109.47191 * 95.36230 * 10 8 6 12 12 H 1.48491 * 109.47311 * 215.36626 * 10 8 6 13 13 H 1.48504 * 109.46656 * 335.36607 * 10 8 6 14 14 C 1.46495 * 120.00334 * 89.99462 * 5 4 3 15 15 C 1.52999 * 109.47389 * 266.85480 * 14 5 4 16 16 N 1.46502 * 109.47015 * 179.04976 * 15 14 5 17 17 C 1.34773 * 119.99983 * 179.97438 * 16 15 14 18 18 O 1.21563 * 120.00221 * 0.02562 * 17 16 15 19 19 C 1.47801 * 120.00319 * 180.02562 * 17 16 15 20 20 C 1.41153 * 118.94841 * 0.02562 * 19 17 16 21 21 C 1.35400 * 121.76670 * 180.27626 * 20 19 17 22 22 C 1.45292 * 119.09066 * 359.47563 * 21 20 19 23 23 N 1.30890 * 138.53307 * 180.16176 * 22 21 20 24 24 O 1.21491 * 109.07021 * 180.33457 * 23 22 21 25 25 N 1.21478 * 116.30418 * 359.97438 * 24 23 22 26 26 C 1.31070 * 109.07817 * 0.02562 * 25 24 23 27 27 C 1.37770 * 118.95397 * 180.02562 * 19 17 16 28 28 H 1.09001 * 109.46997 * 60.00387 * 1 2 3 29 29 H 1.09001 * 109.46762 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46999 * 300.00069 * 1 2 3 31 31 H 1.09000 * 109.47209 * 59.99362 * 3 2 1 32 32 H 1.09001 * 109.46787 * 299.99986 * 3 2 1 33 33 H 1.09006 * 109.47453 * 304.99323 * 4 3 2 34 34 H 1.09004 * 109.47108 * 185.00294 * 4 3 2 35 35 H 0.97005 * 120.00223 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47358 * 146.85181 * 14 5 4 37 37 H 1.09006 * 109.46616 * 26.85561 * 14 5 4 38 38 H 1.08994 * 109.46991 * 59.05455 * 15 14 5 39 39 H 1.08994 * 109.46818 * 299.04802 * 15 14 5 40 40 H 0.96997 * 120.00087 * 0.02562 * 16 15 14 41 41 H 1.08010 * 119.12003 * 0.02562 * 20 19 17 42 42 H 1.07992 * 120.45032 * 179.72314 * 21 20 19 43 43 H 1.08001 * 120.14101 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 4.0969 -0.7970 -1.3368 7 1 3.8249 -1.3080 -2.2484 8 6 4.5692 -1.5202 -0.2501 9 7 4.2799 -2.7989 -0.1347 10 14 5.6155 -0.6784 1.0485 11 1 4.7512 -0.2432 2.1749 12 1 6.6411 -1.6281 1.5498 13 1 6.2860 0.5053 0.4529 14 6 4.2864 1.4006 -2.4148 15 6 3.0425 1.5317 -3.2959 16 7 3.3468 2.3864 -4.4462 17 6 2.3947 2.6445 -5.3645 18 8 1.2833 2.1685 -5.2381 19 6 2.7018 3.5063 -6.5253 20 6 3.9996 4.0469 -6.6505 21 6 4.3413 4.8476 -7.6876 22 6 3.3483 5.1489 -8.7045 23 7 3.2585 5.8368 -9.8144 24 8 2.1333 5.7275 -10.2592 25 7 1.3652 5.0392 -9.6174 26 6 1.9868 4.5743 -8.5613 27 6 1.7122 3.7563 -7.4507 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5684 0.8410 34 1 3.9784 2.1766 0.0890 35 1 4.6097 -3.3042 0.6248 36 1 5.0912 0.9409 -2.9885 37 1 4.5990 2.3891 -2.0780 38 1 2.2326 1.9761 -2.7173 39 1 2.7399 0.5450 -3.6463 40 1 4.2337 2.7659 -4.5473 41 1 4.7389 3.8191 -5.8967 42 1 5.3395 5.2533 -7.7600 43 1 0.7299 3.3258 -7.3239 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677317238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:56 Heat of formation + Delta-G solvation = 100.510530 kcal Electronic energy + Delta-G solvation = -28057.340141 eV Core-core repulsion = 23917.130438 eV Total energy + Delta-G solvation = -4140.209703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -47.06470 -40.30891 -38.22001 -37.48534 -36.00636 -35.20958 -34.55358 -33.62727 -31.66052 -31.50677 -29.91580 -28.15893 -26.35535 -25.67738 -25.38610 -23.80014 -22.30467 -21.72571 -21.46109 -20.67513 -19.33657 -19.18294 -18.36248 -17.69036 -16.87402 -16.21128 -15.85046 -15.45173 -15.26899 -14.93522 -14.84626 -14.75177 -14.60404 -14.15849 -13.84905 -13.70033 -13.44006 -13.34029 -13.03600 -12.61450 -12.48039 -12.24784 -12.22712 -11.94656 -11.74141 -11.69127 -11.23451 -11.05594 -10.77166 -10.68183 -10.35953 -10.31530 -10.17121 -9.79762 -9.59134 -9.13818 -8.98810 -8.76996 -8.47321 -6.93019 -5.93296 -3.36635 -0.56248 0.47562 1.40250 2.30876 2.54401 2.84950 3.16037 3.24010 3.26326 3.32260 3.45911 3.48763 4.12659 4.20032 4.34847 4.51893 4.55729 4.58122 4.72202 4.92816 5.05157 5.30613 5.39808 5.47279 5.55166 5.57641 5.61430 5.73012 5.79989 5.81990 5.89318 5.97442 6.05285 6.10629 6.16464 6.27233 6.37848 6.46396 6.68358 6.71358 7.42574 7.93621 7.99720 8.07473 8.10525 8.41092 8.95416 9.74145 10.06926 11.22224 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.002383 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.289214 B =11745.899418 C =12486.678100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.044 3.956 4 C 0.132 3.868 5 N -0.590 5.590 6 C -0.261 4.261 7 H 0.077 0.923 8 C 0.047 3.953 9 N -0.892 5.892 10 Si 0.874 3.126 11 H -0.286 1.286 12 H -0.303 1.303 13 H -0.271 1.271 14 C 0.139 3.861 15 C 0.094 3.906 16 N -0.713 5.713 17 C 0.550 3.450 18 O -0.528 6.528 19 C -0.094 4.094 20 C -0.069 4.069 21 C -0.060 4.060 22 C 0.023 3.977 23 N -0.343 5.343 24 O 0.377 5.623 25 N -0.332 5.332 26 C 0.012 3.988 27 C 0.000 4.000 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.025 0.975 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.261 0.739 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.397 0.603 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.616 17.521 -12.040 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.036 4.036 4 C 0.006 3.994 5 N -0.311 5.311 6 C -0.389 4.389 7 H 0.094 0.906 8 C -0.154 4.154 9 N -0.532 5.532 10 Si 0.704 3.296 11 H -0.214 1.214 12 H -0.231 1.231 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.031 4.031 16 N -0.365 5.365 17 C 0.335 3.665 18 O -0.406 6.406 19 C -0.102 4.102 20 C -0.091 4.091 21 C -0.081 4.081 22 C -0.132 4.132 23 N -0.065 5.065 24 O 0.138 5.862 25 N -0.051 5.051 26 C -0.140 4.140 27 C -0.021 4.021 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.232 0.768 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.593 17.308 -12.795 21.582 hybrid contribution 0.822 0.408 1.498 1.757 sum -0.771 17.716 -11.297 21.025 Atomic orbital electron populations 1.22652 0.83681 1.01947 0.98338 1.88299 1.16998 1.26273 1.94798 1.23326 0.97246 0.85298 0.97697 1.21403 0.90494 0.96591 0.90927 1.43887 1.76139 1.03861 1.07262 1.18549 1.38822 0.79480 1.02078 0.90579 1.25314 0.97733 0.94801 0.97563 1.69889 1.44521 1.08383 1.30440 0.86997 0.81123 0.79276 0.82164 1.21442 1.23085 1.19628 1.21010 0.93616 0.94590 0.89614 1.22534 1.01083 0.94142 0.85348 1.46020 1.14133 1.51235 1.25103 1.17997 0.85197 0.81009 0.82251 1.90833 1.21896 1.51591 1.76246 1.19959 0.93945 0.99811 0.96471 1.21052 0.95467 0.94901 0.97700 1.20847 0.97579 0.98994 0.90644 1.24167 0.96540 0.97638 0.94819 1.75208 1.00864 1.19388 1.11061 1.85424 1.12632 1.46786 1.41321 1.75298 1.16744 1.07548 1.05554 1.22701 0.91421 1.02846 0.97062 1.20268 1.00957 0.92815 0.88053 0.95084 0.90278 0.95619 0.95424 0.94354 0.91732 0.92669 0.92870 0.91928 0.93860 0.91794 0.90649 0.76809 0.83188 0.82713 0.82112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.64 10.18 -35.23 -0.36 -8.00 16 3 C 0.04 0.82 6.28 37.15 0.23 1.06 16 4 C 0.13 2.67 4.98 -4.05 -0.02 2.65 16 5 N -0.59 -12.77 2.06 -173.24 -0.36 -13.13 16 6 C -0.26 -6.92 9.42 -15.06 -0.14 -7.07 16 7 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 8 C 0.05 1.31 5.30 -17.43 -0.09 1.22 16 9 N -0.89 -26.86 13.97 55.49 0.78 -26.08 16 10 Si 0.87 21.38 25.07 -169.99 -4.26 17.11 16 11 H -0.29 -6.92 6.66 56.52 0.38 -6.54 16 12 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.14 2.30 5.83 -4.04 -0.02 2.28 16 15 C 0.09 1.48 5.99 -4.04 -0.02 1.46 16 16 N -0.71 -8.36 5.50 -61.27 -0.34 -8.69 16 17 C 0.55 7.09 7.75 -12.35 -0.10 7.00 16 18 O -0.53 -9.06 16.21 5.31 0.09 -8.97 16 19 C -0.09 -0.92 5.86 -105.05 -0.62 -1.53 16 20 C -0.07 -0.46 9.39 -39.49 -0.37 -0.83 16 21 C -0.06 -0.40 10.28 -37.79 -0.39 -0.79 16 22 C 0.02 0.22 7.94 -81.25 -0.65 -0.43 16 23 N -0.34 -3.41 12.28 32.76 0.40 -3.01 16 24 O 0.38 3.70 11.67 26.93 0.31 4.01 16 25 N -0.33 -3.57 12.29 31.88 0.39 -3.17 16 26 C 0.01 0.13 7.75 -83.07 -0.64 -0.51 16 27 C 0.00 0.00 9.60 -38.85 -0.37 -0.37 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.68 6.30 -51.93 -0.33 0.35 16 33 H 0.06 1.49 3.28 -51.93 -0.17 1.32 16 34 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 37 H 0.04 0.60 7.86 -51.93 -0.41 0.19 16 38 H 0.06 1.09 6.30 -51.93 -0.33 0.76 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.40 3.16 6.36 -40.82 -0.26 2.90 16 41 H 0.15 0.55 6.23 -52.48 -0.33 0.22 16 42 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.16 1.70 7.52 -52.49 -0.39 1.30 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -33.92 362.39 -5.13 -39.06 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.16 Total: -0.36 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -2.09 Total: 5.77 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.88 Total: -54.09 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.04 Total: -12.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.26 Total: 17.11 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.92 -5.13 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677317238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.569 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds