Wall clock time and date at job start Tue Mar 31 2020 17:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99879 * 2 1 4 4 C 1.52993 * 109.47115 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47765 * 64.99762 * 4 3 2 6 6 C 1.36944 * 120.00047 * 270.00376 * 5 4 3 7 7 H 1.07996 * 120.00270 * 142.63982 * 6 5 4 8 8 C 1.38809 * 119.99692 * 322.63665 * 6 5 4 9 9 N 1.31615 * 120.00068 * 157.14293 * 8 6 5 10 10 Si 1.86804 * 120.00322 * 337.14735 * 8 6 5 11 11 H 1.48504 * 109.47191 * 95.36230 * 10 8 6 12 12 H 1.48491 * 109.47311 * 215.36626 * 10 8 6 13 13 H 1.48504 * 109.46656 * 335.36607 * 10 8 6 14 14 C 1.46495 * 120.00334 * 89.99462 * 5 4 3 15 15 C 1.52999 * 109.47389 * 266.85480 * 14 5 4 16 16 N 1.46502 * 109.47015 * 179.04976 * 15 14 5 17 17 C 1.34773 * 119.99983 * 179.97438 * 16 15 14 18 18 O 1.21563 * 120.00221 * 0.02562 * 17 16 15 19 19 C 1.47801 * 120.00319 * 180.02562 * 17 16 15 20 20 C 1.41153 * 118.94841 * 0.02562 * 19 17 16 21 21 C 1.35400 * 121.76670 * 180.27626 * 20 19 17 22 22 C 1.45292 * 119.09066 * 359.47563 * 21 20 19 23 23 N 1.30890 * 138.53307 * 180.16176 * 22 21 20 24 24 O 1.21491 * 109.07021 * 180.33457 * 23 22 21 25 25 N 1.21478 * 116.30418 * 359.97438 * 24 23 22 26 26 C 1.31070 * 109.07817 * 0.02562 * 25 24 23 27 27 C 1.37770 * 118.95397 * 180.02562 * 19 17 16 28 28 H 1.09001 * 109.46997 * 60.00387 * 1 2 3 29 29 H 1.09001 * 109.46762 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46999 * 300.00069 * 1 2 3 31 31 H 1.09000 * 109.47209 * 59.99362 * 3 2 1 32 32 H 1.09001 * 109.46787 * 299.99986 * 3 2 1 33 33 H 1.09006 * 109.47453 * 304.99323 * 4 3 2 34 34 H 1.09004 * 109.47108 * 185.00294 * 4 3 2 35 35 H 0.97005 * 120.00223 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47358 * 146.85181 * 14 5 4 37 37 H 1.09006 * 109.46616 * 26.85561 * 14 5 4 38 38 H 1.08994 * 109.46991 * 59.05455 * 15 14 5 39 39 H 1.08994 * 109.46818 * 299.04802 * 15 14 5 40 40 H 0.96997 * 120.00087 * 0.02562 * 16 15 14 41 41 H 1.08010 * 119.12003 * 0.02562 * 20 19 17 42 42 H 1.07992 * 120.45032 * 179.72314 * 21 20 19 43 43 H 1.08001 * 120.14101 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 4.0969 -0.7970 -1.3368 7 1 3.8249 -1.3080 -2.2484 8 6 4.5692 -1.5202 -0.2501 9 7 4.2799 -2.7989 -0.1347 10 14 5.6155 -0.6784 1.0485 11 1 4.7512 -0.2432 2.1749 12 1 6.6411 -1.6281 1.5498 13 1 6.2860 0.5053 0.4529 14 6 4.2864 1.4006 -2.4148 15 6 3.0425 1.5317 -3.2959 16 7 3.3468 2.3864 -4.4462 17 6 2.3947 2.6445 -5.3645 18 8 1.2833 2.1685 -5.2381 19 6 2.7018 3.5063 -6.5253 20 6 3.9996 4.0469 -6.6505 21 6 4.3413 4.8476 -7.6876 22 6 3.3483 5.1489 -8.7045 23 7 3.2585 5.8368 -9.8144 24 8 2.1333 5.7275 -10.2592 25 7 1.3652 5.0392 -9.6174 26 6 1.9868 4.5743 -8.5613 27 6 1.7122 3.7563 -7.4507 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5684 0.8410 34 1 3.9784 2.1766 0.0890 35 1 4.6097 -3.3042 0.6248 36 1 5.0912 0.9409 -2.9885 37 1 4.5990 2.3891 -2.0780 38 1 2.2326 1.9761 -2.7173 39 1 2.7399 0.5450 -3.6463 40 1 4.2337 2.7659 -4.5473 41 1 4.7389 3.8191 -5.8967 42 1 5.3395 5.2533 -7.7600 43 1 0.7299 3.3258 -7.3239 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677317238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:55 Heat of formation + Delta-G solvation = 74.838330 kcal Electronic energy + Delta-G solvation = -28058.453371 eV Core-core repulsion = 23917.130438 eV Total energy + Delta-G solvation = -4141.322933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -47.81398 -41.29880 -39.21473 -38.88123 -37.51079 -36.00703 -35.82852 -34.45388 -33.61565 -32.20524 -31.28145 -29.64999 -27.40216 -27.15208 -26.09641 -25.41878 -23.67235 -22.54744 -22.41758 -22.23628 -20.11870 -20.09967 -19.12232 -18.77632 -18.46532 -17.72167 -17.05551 -17.01971 -16.51194 -16.30883 -15.92940 -15.71860 -15.51183 -15.45810 -15.16814 -15.01509 -14.62121 -14.38870 -14.24456 -13.99385 -13.78754 -13.56463 -13.17442 -13.00359 -12.99214 -12.88883 -12.54421 -12.39895 -12.36713 -12.27739 -11.84508 -11.65224 -11.37974 -11.31824 -11.08517 -10.52947 -10.38216 -10.11350 -9.73866 -8.74404 -8.04733 -5.43920 -1.30283 -0.22758 0.65936 1.40219 1.48589 1.48907 1.59686 1.72068 2.05173 2.29849 2.38176 2.54463 2.54880 3.12440 3.14864 3.39445 3.43943 3.60280 3.69737 3.88635 4.03953 4.22115 4.24164 4.37204 4.41122 4.44099 4.53599 4.58860 4.63817 4.65902 4.68204 4.79229 4.86011 4.87602 4.93375 5.04242 5.15453 5.19319 5.23009 5.44038 6.04713 6.30086 6.45760 6.57828 7.07357 7.12839 7.25004 7.74917 8.11620 9.15468 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.002383 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.289214 B =11745.899418 C =12486.678100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.042 3.958 4 C 0.122 3.878 5 N -0.603 5.603 6 C -0.236 4.236 7 H 0.029 0.971 8 C -0.017 4.017 9 N -0.951 5.951 10 Si 0.944 3.056 11 H -0.283 1.283 12 H -0.318 1.318 13 H -0.241 1.241 14 C 0.140 3.860 15 C 0.112 3.888 16 N -0.695 5.695 17 C 0.551 3.449 18 O -0.578 6.578 19 C -0.084 4.084 20 C -0.065 4.065 21 C -0.044 4.044 22 C 0.020 3.980 23 N -0.350 5.350 24 O 0.379 5.621 25 N -0.348 5.348 26 C -0.001 4.001 27 C -0.015 4.015 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.257 0.743 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.420 0.580 41 H 0.189 0.811 42 H 0.194 0.806 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 21.245 -11.633 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C -0.037 4.037 4 C -0.003 4.003 5 N -0.325 5.325 6 C -0.366 4.366 7 H 0.047 0.953 8 C -0.213 4.213 9 N -0.595 5.595 10 Si 0.773 3.227 11 H -0.211 1.211 12 H -0.247 1.247 13 H -0.165 1.165 14 C 0.013 3.987 15 C -0.014 4.014 16 N -0.348 5.348 17 C 0.338 3.662 18 O -0.459 6.459 19 C -0.092 4.092 20 C -0.086 4.086 21 C -0.064 4.064 22 C -0.134 4.134 23 N -0.073 5.073 24 O 0.141 5.859 25 N -0.067 5.067 26 C -0.153 4.153 27 C -0.036 4.036 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.259 0.741 41 H 0.206 0.794 42 H 0.211 0.789 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.663 21.117 -12.419 24.507 hybrid contribution 0.008 -0.714 1.248 1.438 sum 0.671 20.403 -11.171 23.271 Atomic orbital electron populations 1.22759 0.81675 1.02326 0.99934 1.88222 1.19505 1.28668 1.95196 1.23389 0.96361 0.84402 0.99504 1.21600 0.91671 0.98039 0.88960 1.43968 1.76649 1.02516 1.09328 1.18318 1.36355 0.82026 0.99921 0.95299 1.25974 0.99518 0.95301 1.00490 1.70057 1.47045 1.10596 1.31831 0.85866 0.78770 0.78583 0.79477 1.21111 1.24736 1.16461 1.21186 0.93530 0.95979 0.87956 1.22017 1.00616 0.92521 0.86231 1.45692 1.15157 1.50237 1.23680 1.18432 0.84442 0.80569 0.82783 1.90819 1.24100 1.53552 1.77387 1.19761 0.95409 0.99273 0.94729 1.21333 0.94345 0.94271 0.98688 1.21329 0.98298 0.97808 0.88943 1.24640 0.96659 0.97063 0.95083 1.75188 1.00868 1.19799 1.11440 1.85412 1.12662 1.46631 1.41204 1.75264 1.17305 1.08038 1.06050 1.22759 0.92319 1.03226 0.97013 1.20185 1.00965 0.93684 0.88815 0.94397 0.90705 0.92897 0.92526 0.93367 0.94484 0.88020 0.93447 0.91614 0.89029 0.92737 0.95175 0.74061 0.79405 0.78920 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 11.01 113.37 1.25 2.26 16 2 O -0.40 -17.46 10.18 -148.98 -1.52 -18.98 16 3 C 0.04 1.48 6.28 71.98 0.45 1.93 16 4 C 0.12 4.56 4.98 86.38 0.43 4.99 16 5 N -0.60 -25.01 2.06 -702.01 -1.45 -26.46 16 6 C -0.24 -12.75 9.42 84.03 0.79 -11.96 16 7 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 8 C -0.02 -0.97 5.30 84.86 0.45 -0.52 16 9 N -0.95 -59.80 13.97 21.65 0.30 -59.49 16 10 Si 0.94 44.21 25.07 68.60 1.72 45.93 16 11 H -0.28 -12.98 6.66 99.48 0.66 -12.31 16 12 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 13 H -0.24 -9.98 7.11 99.48 0.71 -9.28 16 14 C 0.14 4.17 5.83 86.38 0.50 4.67 16 15 C 0.11 3.41 5.99 86.38 0.52 3.93 16 16 N -0.69 -14.45 5.50 -466.03 -2.56 -17.01 16 17 C 0.55 13.54 7.75 86.77 0.67 14.21 16 18 O -0.58 -20.23 16.21 -3.92 -0.06 -20.29 16 19 C -0.08 -1.48 5.86 -20.14 -0.12 -1.60 16 20 C -0.06 -0.58 9.39 22.33 0.21 -0.37 16 21 C -0.04 -0.39 10.28 23.43 0.24 -0.15 16 22 C 0.02 0.33 7.94 43.83 0.35 0.68 16 23 N -0.35 -6.38 12.28 -54.89 -0.67 -7.05 16 24 O 0.38 7.21 11.67 139.31 1.63 8.84 16 25 N -0.35 -7.43 12.29 -57.38 -0.71 -8.14 16 26 C 0.00 -0.02 7.75 42.57 0.33 0.31 16 27 C -0.02 -0.31 9.60 22.74 0.22 -0.09 16 28 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.59 6.30 -2.39 -0.02 1.57 16 33 H 0.04 1.61 3.28 -2.38 -0.01 1.60 16 34 H 0.10 2.83 7.87 -2.38 -0.02 2.82 16 35 H 0.26 15.44 8.31 -92.70 -0.77 14.66 16 36 H 0.07 1.95 8.07 -2.38 -0.02 1.93 16 37 H 0.09 1.95 7.86 -2.38 -0.02 1.93 16 38 H 0.05 1.78 6.30 -2.39 -0.02 1.76 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.42 4.72 6.36 -92.71 -0.59 4.13 16 41 H 0.19 0.21 6.23 -2.91 -0.02 0.19 16 42 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.15 3.33 7.52 -2.91 -0.02 3.31 16 Total: -1.00 -80.24 362.39 3.41 -76.83 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.44 Total: 7.54 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.29 Total: 18.29 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -5.09 Total: -118.15 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: 0.05 Total: -30.43 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.72 Total: 45.93 kcal Total: -80.24 3.41 -76.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677317238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.664 kcal (2) G-P(sol) polarization free energy of solvation -80.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds