Wall clock time and date at job start Tue Mar 31 2020 17:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35665 * 117.00242 * 2 1 4 4 C 1.39285 * 119.61428 * 179.97438 * 3 2 1 5 5 C 1.38327 * 119.30181 * 179.97438 * 4 3 2 6 6 C 1.38779 * 118.56478 * 359.97438 * 5 4 3 7 7 C 1.39131 * 119.18598 * 0.02562 * 6 5 4 8 8 C 1.48148 * 119.69143 * 179.97438 * 7 6 5 9 9 O 1.21512 * 119.99864 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99990 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00060 * 179.97438 * 10 8 7 12 12 C 1.53938 * 113.73272 * 253.76862 * 11 10 8 13 13 N 1.48183 * 86.10288 * 221.95760 * 12 11 10 14 14 C 1.46903 * 111.07177 * 137.52084 * 13 12 11 15 15 C 1.50701 * 109.46778 * 70.56958 * 14 13 12 16 16 O 1.21295 * 120.00243 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99720 * 179.97438 * 15 14 13 18 18 C 1.37096 * 119.99806 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99799 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99786 * 180.02562 * 18 17 15 21 21 N 1.31407 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99747 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47131 * 89.99936 * 22 20 18 24 24 H 1.48506 * 109.47095 * 209.99775 * 22 20 18 25 25 H 1.48503 * 109.47562 * 329.99705 * 22 20 18 26 26 C 1.47960 * 90.79904 * 24.60281 * 13 12 11 27 27 N 1.31899 * 119.61529 * 359.72959 * 3 2 1 28 28 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46864 * 300.00238 * 1 2 3 30 30 H 1.08999 * 109.46969 * 59.99619 * 1 2 3 31 31 H 1.08003 * 120.35046 * 359.96141 * 4 3 2 32 32 H 1.08004 * 120.71847 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.41021 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99868 * 0.02562 * 10 8 7 35 35 H 1.08996 * 112.94003 * 25.33412 * 11 10 8 36 36 H 1.08998 * 113.75952 * 336.23885 * 12 11 10 37 37 H 1.09003 * 113.75420 * 107.60511 * 12 11 10 38 38 H 1.08997 * 109.46865 * 190.56393 * 14 13 12 39 39 H 1.08993 * 109.47170 * 310.56852 * 14 13 12 40 40 H 0.97004 * 119.99816 * 359.97438 * 17 15 14 41 41 H 0.97004 * 119.99526 * 180.02562 * 21 20 18 42 42 H 1.09004 * 113.76067 * 221.08778 * 26 13 12 43 43 H 1.08997 * 113.86177 * 89.72870 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4364 1.2722 0.0005 5 6 4.0577 2.5081 0.0000 6 6 3.2668 3.6484 -0.0016 7 6 1.8820 3.5137 -0.0021 8 6 1.0270 4.7235 -0.0032 9 8 1.5357 5.8270 -0.0033 10 7 -0.3151 4.6001 -0.0042 11 6 -1.1607 5.7965 -0.0048 12 6 -1.8409 6.0750 1.3477 13 7 -3.0508 6.4024 0.5572 14 6 -4.2557 5.8332 1.1756 15 6 -4.5667 6.5780 2.4482 16 8 -3.8544 7.4926 2.8053 17 7 -5.6364 6.2278 3.1897 18 6 -5.9196 6.9057 4.3472 19 1 -5.2854 7.7200 4.6651 20 6 -7.0221 6.5443 5.1119 21 7 -7.7934 5.5531 4.7253 22 14 -7.4076 7.4674 6.6894 23 1 -8.3045 8.6116 6.3867 24 1 -8.0788 6.5522 7.6471 25 1 -6.1461 7.9723 7.2885 26 6 -2.5764 5.5543 -0.5586 27 7 1.3193 2.3101 -0.0054 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0240 0.3660 0.0016 32 1 5.1351 2.5840 0.0000 33 1 3.7206 4.6285 -0.0017 34 1 -0.7212 3.7192 -0.0038 35 1 -0.6647 6.6671 -0.4339 36 1 -1.9518 5.1899 1.9741 37 1 -1.4211 6.9266 1.8832 38 1 -5.0954 5.9247 0.4867 39 1 -4.0850 4.7810 1.4028 40 1 -6.2062 5.4966 2.9039 41 1 -8.5632 5.3011 5.2590 42 1 -2.7432 5.9906 -1.5435 43 1 -2.9021 4.5162 -0.4927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692249655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:40 Heat of formation + Delta-G solvation = -23.592946 kcal Electronic energy + Delta-G solvation = -27612.253182 eV Core-core repulsion = 23466.661949 eV Total energy + Delta-G solvation = -4145.591233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27182 -40.34829 -39.16470 -38.01511 -37.56553 -34.33455 -33.85319 -32.92332 -31.33281 -31.22933 -29.70923 -27.77946 -26.04354 -25.88145 -24.83568 -23.46058 -23.17308 -21.15055 -20.26030 -19.22156 -18.77613 -18.10147 -17.90035 -16.57357 -16.48064 -16.44626 -16.27567 -16.12770 -15.30441 -15.24613 -14.84658 -14.57889 -14.56758 -14.14432 -13.93213 -13.72869 -13.57364 -13.28081 -12.89741 -12.67130 -12.54416 -12.17729 -12.09775 -11.74454 -11.61107 -11.52716 -11.27096 -11.07570 -10.79542 -10.60854 -10.44447 -10.39737 -10.22318 -9.99761 -9.51395 -9.22206 -8.96776 -8.72124 -8.26069 -7.97245 -6.42671 -3.83304 0.23811 0.80896 2.44937 2.61009 2.80515 3.17530 3.26147 3.32231 3.46165 3.62479 3.87979 4.00580 4.19307 4.41554 4.48954 4.53837 4.56075 4.81271 4.87135 4.90773 4.96110 4.96449 5.02021 5.19630 5.27959 5.28539 5.43109 5.47589 5.63269 5.66073 5.68512 5.76953 5.85958 5.93607 6.16811 6.26189 6.33873 6.57001 6.72348 7.08176 7.13372 7.38075 7.54600 7.94258 8.04826 8.60413 9.17240 9.52909 10.04739 10.75155 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.002204 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.435092 B =12700.727599 C =13386.094961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.307 6.307 3 C 0.321 3.679 4 C -0.167 4.167 5 C -0.047 4.047 6 C -0.147 4.147 7 C 0.120 3.880 8 C 0.572 3.428 9 O -0.525 6.525 10 N -0.700 5.700 11 C 0.112 3.888 12 C 0.011 3.989 13 N -0.448 5.448 14 C 0.013 3.987 15 C 0.443 3.557 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.007 4.007 27 N -0.518 5.518 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.409 0.591 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.097 0.903 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.947 -13.780 -13.309 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.213 6.213 3 C 0.139 3.861 4 C -0.188 4.188 5 C -0.072 4.072 6 C -0.168 4.168 7 C -0.016 4.016 8 C 0.356 3.644 9 O -0.400 6.400 10 N -0.351 5.351 11 C 0.007 3.993 12 C -0.119 4.119 13 N -0.171 5.171 14 C -0.119 4.119 15 C 0.228 3.772 16 O -0.461 6.461 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.137 4.137 27 N -0.246 5.246 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.245 0.755 35 H 0.144 0.856 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.571 -12.060 -13.082 25.719 hybrid contribution -0.319 -1.376 0.878 1.663 sum 18.253 -13.436 -12.204 25.742 Atomic orbital electron populations 1.22941 0.76705 1.03442 1.02740 1.86257 1.23310 1.23998 1.87747 1.19763 0.89445 0.84400 0.92454 1.21322 0.91992 0.99997 1.05484 1.21478 1.01046 0.90756 0.93945 1.22030 0.93004 1.01024 1.00764 1.20817 0.92281 0.90137 0.98398 1.17878 0.82453 0.87355 0.76713 1.90817 1.73871 1.25798 1.49495 1.45921 1.05506 1.10414 1.73211 1.23244 0.89357 0.88825 0.97898 1.24344 0.90550 1.01670 0.95291 1.68426 1.00970 1.42739 1.04982 1.22451 0.95370 0.96833 0.97264 1.19669 0.84133 0.87368 0.86028 1.90536 1.50947 1.32114 1.72473 1.41865 1.24319 1.32289 1.21672 1.19702 1.10133 1.14598 0.98332 0.87923 1.25259 0.95991 0.96872 0.99847 1.69611 1.16810 1.28091 1.39898 0.85856 0.78757 0.78879 0.80803 1.20357 1.20937 1.19418 1.24420 0.93151 0.97619 0.98524 1.67129 1.41106 0.98249 1.18071 0.88299 0.91934 0.92070 0.83497 0.83160 0.82968 0.75522 0.85617 0.91238 0.88061 0.88933 0.92811 0.77519 0.91887 0.88425 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.38 101.05 1.05 1.29 16 2 O -0.31 -2.70 10.48 -18.70 -0.20 -2.89 16 3 C 0.32 2.99 7.49 -17.13 -0.13 2.86 16 4 C -0.17 -1.19 10.05 -39.16 -0.39 -1.58 16 5 C -0.05 -0.30 10.16 -39.35 -0.40 -0.70 16 6 C -0.15 -1.30 9.63 -39.05 -0.38 -1.68 16 7 C 0.12 1.31 6.75 -83.02 -0.56 0.75 16 8 C 0.57 7.29 7.81 -12.19 -0.10 7.20 16 9 O -0.52 -8.15 15.94 5.36 0.09 -8.07 16 10 N -0.70 -8.01 5.36 -55.79 -0.30 -8.31 16 11 C 0.11 1.44 4.40 -69.62 -0.31 1.13 16 12 C 0.01 0.18 6.57 -2.63 -0.02 0.16 16 13 N -0.45 -7.42 5.95 -239.68 -1.43 -8.85 16 14 C 0.01 0.23 5.31 -4.97 -0.03 0.20 16 15 C 0.44 10.54 7.59 -10.98 -0.08 10.46 16 16 O -0.58 -15.86 15.13 5.54 0.08 -15.77 16 17 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 22 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.01 -0.09 7.73 -2.76 -0.02 -0.11 16 27 N -0.52 -5.30 8.39 -9.87 -0.08 -5.39 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 32 H 0.15 0.46 8.06 -52.48 -0.42 0.04 16 33 H 0.15 1.28 7.63 -52.48 -0.40 0.87 16 34 H 0.41 4.01 8.04 -40.82 -0.33 3.68 16 35 H 0.13 1.75 7.50 -51.93 -0.39 1.36 16 36 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 37 H 0.10 1.88 8.10 -51.93 -0.42 1.46 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.05 0.83 7.70 -51.93 -0.40 0.43 16 40 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.72 7.77 -51.93 -0.40 0.31 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -34.34 374.12 -7.69 -42.03 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.53 Total: 11.76 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -1.60 Total: 11.96 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -1.14 Total: -60.83 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.03 Total: -26.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.34 -7.69 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692249655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.435 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds