Wall clock time and date at job start Tue Mar 31 2020 17:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35665 * 117.00242 * 2 1 4 4 C 1.39285 * 119.61428 * 179.97438 * 3 2 1 5 5 C 1.38327 * 119.30181 * 179.97438 * 4 3 2 6 6 C 1.38779 * 118.56478 * 359.97438 * 5 4 3 7 7 C 1.39131 * 119.18598 * 0.02562 * 6 5 4 8 8 C 1.48148 * 119.69143 * 179.97438 * 7 6 5 9 9 O 1.21512 * 119.99864 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99990 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00060 * 179.97438 * 10 8 7 12 12 C 1.53938 * 113.73272 * 253.76862 * 11 10 8 13 13 N 1.48183 * 86.10288 * 221.95760 * 12 11 10 14 14 C 1.46903 * 111.07177 * 137.52084 * 13 12 11 15 15 C 1.50701 * 109.46778 * 70.56958 * 14 13 12 16 16 O 1.21295 * 120.00243 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99720 * 179.97438 * 15 14 13 18 18 C 1.37096 * 119.99806 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99799 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99786 * 180.02562 * 18 17 15 21 21 N 1.31407 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99747 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47131 * 89.99936 * 22 20 18 24 24 H 1.48506 * 109.47095 * 209.99775 * 22 20 18 25 25 H 1.48503 * 109.47562 * 329.99705 * 22 20 18 26 26 C 1.47960 * 90.79904 * 24.60281 * 13 12 11 27 27 N 1.31899 * 119.61529 * 359.72959 * 3 2 1 28 28 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46864 * 300.00238 * 1 2 3 30 30 H 1.08999 * 109.46969 * 59.99619 * 1 2 3 31 31 H 1.08003 * 120.35046 * 359.96141 * 4 3 2 32 32 H 1.08004 * 120.71847 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.41021 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99868 * 0.02562 * 10 8 7 35 35 H 1.08996 * 112.94003 * 25.33412 * 11 10 8 36 36 H 1.08998 * 113.75952 * 336.23885 * 12 11 10 37 37 H 1.09003 * 113.75420 * 107.60511 * 12 11 10 38 38 H 1.08997 * 109.46865 * 190.56393 * 14 13 12 39 39 H 1.08993 * 109.47170 * 310.56852 * 14 13 12 40 40 H 0.97004 * 119.99816 * 359.97438 * 17 15 14 41 41 H 0.97004 * 119.99526 * 180.02562 * 21 20 18 42 42 H 1.09004 * 113.76067 * 221.08778 * 26 13 12 43 43 H 1.08997 * 113.86177 * 89.72870 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4364 1.2722 0.0005 5 6 4.0577 2.5081 0.0000 6 6 3.2668 3.6484 -0.0016 7 6 1.8820 3.5137 -0.0021 8 6 1.0270 4.7235 -0.0032 9 8 1.5357 5.8270 -0.0033 10 7 -0.3151 4.6001 -0.0042 11 6 -1.1607 5.7965 -0.0048 12 6 -1.8409 6.0750 1.3477 13 7 -3.0508 6.4024 0.5572 14 6 -4.2557 5.8332 1.1756 15 6 -4.5667 6.5780 2.4482 16 8 -3.8544 7.4926 2.8053 17 7 -5.6364 6.2278 3.1897 18 6 -5.9196 6.9057 4.3472 19 1 -5.2854 7.7200 4.6651 20 6 -7.0221 6.5443 5.1119 21 7 -7.7934 5.5531 4.7253 22 14 -7.4076 7.4674 6.6894 23 1 -8.3045 8.6116 6.3867 24 1 -8.0788 6.5522 7.6471 25 1 -6.1461 7.9723 7.2885 26 6 -2.5764 5.5543 -0.5586 27 7 1.3193 2.3101 -0.0054 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0240 0.3660 0.0016 32 1 5.1351 2.5840 0.0000 33 1 3.7206 4.6285 -0.0017 34 1 -0.7212 3.7192 -0.0038 35 1 -0.6647 6.6671 -0.4339 36 1 -1.9518 5.1899 1.9741 37 1 -1.4211 6.9266 1.8832 38 1 -5.0954 5.9247 0.4867 39 1 -4.0850 4.7810 1.4028 40 1 -6.2062 5.4966 2.9039 41 1 -8.5632 5.3011 5.2590 42 1 -2.7432 5.9906 -1.5435 43 1 -2.9021 4.5162 -0.4927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692249655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:38 Heat of formation + Delta-G solvation = -53.744129 kcal Electronic energy + Delta-G solvation = -27613.560636 eV Core-core repulsion = 23466.661949 eV Total energy + Delta-G solvation = -4146.898687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04601 -41.42465 -40.29509 -39.41649 -38.58900 -36.00445 -35.26713 -33.63314 -33.30418 -31.98644 -31.04048 -28.37046 -27.44876 -27.14792 -26.07670 -24.61496 -23.91072 -22.10364 -21.38291 -20.99623 -19.91930 -19.54006 -18.84989 -17.92801 -17.63842 -17.12030 -17.05475 -17.02738 -16.59465 -16.56231 -16.28761 -15.94845 -15.61708 -15.48956 -15.16428 -14.91656 -14.46209 -14.28930 -14.14951 -13.74912 -13.59812 -13.53529 -13.23807 -13.17296 -12.87837 -12.69995 -12.48295 -12.42036 -12.17986 -12.14970 -11.84549 -11.71956 -11.52347 -11.03842 -10.78726 -10.37436 -10.26397 -10.03818 -9.79072 -9.63499 -8.49042 -5.97550 -0.46218 0.20523 1.35865 1.39748 1.52285 1.58299 1.84401 2.02589 2.06569 2.27468 2.73117 2.76301 2.95118 3.16658 3.19668 3.51190 3.71930 3.79740 3.90727 4.01300 4.07055 4.23627 4.24867 4.32540 4.40484 4.44747 4.45146 4.46387 4.51643 4.65148 4.79374 4.80244 4.89548 4.93297 5.10510 5.27941 5.31357 5.32207 5.39070 5.82190 6.02479 6.08017 6.28261 6.58057 6.60269 7.00357 7.10710 7.53429 8.09875 8.68384 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.002204 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.435092 B =12700.727599 C =13386.094961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.314 6.314 3 C 0.302 3.698 4 C -0.158 4.158 5 C -0.035 4.035 6 C -0.150 4.150 7 C 0.094 3.906 8 C 0.569 3.431 9 O -0.561 6.561 10 N -0.689 5.689 11 C 0.126 3.874 12 C 0.005 3.995 13 N -0.476 5.476 14 C 0.026 3.974 15 C 0.438 3.562 16 O -0.621 6.621 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.275 1.275 26 C 0.011 3.989 27 N -0.528 5.528 28 H 0.121 0.879 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.175 0.825 32 H 0.190 0.810 33 H 0.152 0.848 34 H 0.418 0.582 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.119 0.881 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.492 -16.000 -14.256 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.221 6.221 3 C 0.120 3.880 4 C -0.178 4.178 5 C -0.060 4.060 6 C -0.172 4.172 7 C -0.041 4.041 8 C 0.355 3.645 9 O -0.439 6.439 10 N -0.340 5.340 11 C 0.020 3.980 12 C -0.125 4.125 13 N -0.200 5.200 14 C -0.106 4.106 15 C 0.225 3.775 16 O -0.507 6.507 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.196 1.196 24 H -0.193 1.193 25 H -0.200 1.200 26 C -0.118 4.118 27 N -0.255 5.255 28 H 0.139 0.861 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.193 0.807 32 H 0.207 0.793 33 H 0.170 0.830 34 H 0.256 0.744 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.137 0.863 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 19.090 -14.328 -14.055 27.699 hybrid contribution -0.415 -0.741 1.149 1.429 sum 18.674 -15.069 -12.906 27.246 Atomic orbital electron populations 1.23087 0.75892 1.04824 1.02364 1.86256 1.24233 1.23771 1.87818 1.20151 0.90499 0.84248 0.93095 1.21743 0.91306 1.01372 1.03411 1.21897 1.02685 0.89387 0.92041 1.22215 0.92513 1.02157 1.00320 1.20589 0.92753 0.89630 1.01157 1.18255 0.82783 0.87691 0.75744 1.90789 1.74513 1.27329 1.51313 1.45794 1.05194 1.10377 1.72649 1.22923 0.90239 0.89136 0.95661 1.24264 0.91494 1.00116 0.96602 1.68393 1.00459 1.44774 1.06326 1.22362 0.96806 0.97110 0.94296 1.20804 0.82624 0.86766 0.87296 1.90509 1.52069 1.34152 1.73946 1.41924 1.25133 1.32484 1.21511 1.19627 1.11050 1.15312 1.00330 0.90626 1.26012 0.95239 0.97482 1.02427 1.69662 1.16937 1.28492 1.40888 0.84955 0.78296 0.78040 0.77212 1.19598 1.19313 1.19997 1.24480 0.90939 0.98675 0.97659 1.66992 1.41688 0.98278 1.18553 0.86104 0.92727 0.91994 0.80748 0.79281 0.83001 0.74355 0.86822 0.91307 0.91813 0.86575 0.90001 0.76893 0.91237 0.86302 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.38 113.37 1.18 1.57 16 2 O -0.31 -5.02 10.48 -89.81 -0.94 -5.96 16 3 C 0.30 5.14 7.49 84.93 0.64 5.78 16 4 C -0.16 -1.81 10.05 22.54 0.23 -1.58 16 5 C -0.04 -0.35 10.16 22.42 0.23 -0.12 16 6 C -0.15 -2.51 9.63 22.61 0.22 -2.30 16 7 C 0.09 2.02 6.75 41.84 0.28 2.30 16 8 C 0.57 14.76 7.81 86.88 0.68 15.44 16 9 O -0.56 -18.12 15.94 -3.75 -0.06 -18.18 16 10 N -0.69 -15.56 5.36 -448.72 -2.41 -17.97 16 11 C 0.13 3.22 4.40 46.56 0.20 3.43 16 12 C 0.01 0.18 6.57 86.37 0.57 0.75 16 13 N -0.48 -15.46 5.95 -912.20 -5.42 -20.88 16 14 C 0.03 0.88 5.31 85.56 0.45 1.33 16 15 C 0.44 21.21 7.59 87.66 0.67 21.88 16 16 O -0.62 -35.53 15.13 -3.08 -0.05 -35.58 16 17 N -0.57 -29.69 5.29 -306.97 -1.62 -31.31 16 18 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 21 N -0.92 -49.61 13.05 21.66 0.28 -49.32 16 22 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 C 0.01 0.24 7.73 86.41 0.67 0.90 16 27 N -0.53 -10.37 8.39 -298.21 -2.50 -12.87 16 28 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.73 8.11 -2.39 -0.02 0.71 16 30 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.19 0.36 8.06 -2.91 -0.02 0.34 16 33 H 0.15 2.49 7.63 -2.91 -0.02 2.47 16 34 H 0.42 7.77 8.04 -92.70 -0.75 7.02 16 35 H 0.11 3.24 7.50 -2.39 -0.02 3.22 16 36 H 0.07 2.24 7.79 -2.39 -0.02 2.23 16 37 H 0.06 2.56 8.10 -2.39 -0.02 2.54 16 38 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.08 2.33 7.70 -2.39 -0.02 2.32 16 40 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 41 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.10 1.62 7.77 -2.39 -0.02 1.60 16 Total: -1.00 -77.71 374.12 -3.81 -81.52 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.41 Total: 34.28 kcal Atomic # 6 Polarization: 23.51 SS G_CDS: 7.29 Total: 30.79 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -11.67 Total: -132.35 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -1.05 Total: -59.72 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -77.71 -3.81 -81.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692249655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.775 kcal (2) G-P(sol) polarization free energy of solvation -77.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds