Wall clock time and date at job start Tue Mar 31 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00187 * 2 1 4 4 H 1.48497 * 109.47249 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47357 * 300.00666 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00209 * 3 2 1 7 7 C 1.38814 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99532 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00060 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47119 * 179.97438 * 10 9 7 12 12 C 1.31004 * 120.00004 * 127.00526 * 11 10 9 13 13 C 1.50709 * 119.99580 * 7.56209 * 12 11 10 14 14 N 1.46504 * 109.47039 * 127.15609 * 13 12 11 15 15 C 1.34772 * 119.99841 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99936 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00025 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.69539 * 60.55662 * 17 15 14 19 19 C 1.53408 * 109.69880 * 299.99753 * 17 15 14 20 20 O 1.42818 * 108.37707 * 175.53525 * 19 17 15 21 21 C 1.35894 * 117.86370 * 49.16694 * 20 19 17 22 22 C 1.39131 * 118.47031 * 163.00836 * 21 20 19 23 23 C 1.37966 * 120.25196 * 179.76103 * 22 21 20 24 24 C 1.38485 * 119.93188 * 359.92865 * 23 22 21 25 25 F 1.35103 * 120.03541 * 179.79834 * 24 23 22 26 26 C 1.38285 * 119.92775 * 0.08157 * 24 23 22 27 27 C 1.38354 * 121.79570 * 342.80938 * 21 20 19 28 28 C 1.50770 * 121.40643 * 0.46567 * 27 21 20 29 29 H 0.96996 * 119.99738 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00011 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46713 * 59.99897 * 10 9 7 32 32 H 1.08999 * 109.47032 * 300.00282 * 10 9 7 33 33 H 1.08003 * 120.00169 * 307.00779 * 11 10 9 34 34 H 1.07991 * 120.00556 * 187.55727 * 12 11 10 35 35 H 1.09002 * 109.47364 * 7.15476 * 13 12 11 36 36 H 1.09002 * 109.46984 * 247.15508 * 13 12 11 37 37 H 0.96997 * 120.00046 * 0.02562 * 14 13 12 38 38 H 1.09006 * 109.68282 * 55.81202 * 19 17 15 39 39 H 1.08999 * 109.71355 * 295.27621 * 19 17 15 40 40 H 1.07994 * 119.87434 * 359.72806 * 22 21 20 41 41 H 1.08007 * 120.03603 * 179.91784 * 23 22 21 42 42 H 1.08004 * 119.85287 * 180.02562 * 26 24 23 43 43 H 1.09004 * 109.44073 * 222.10550 * 28 27 21 44 44 H 1.08999 * 109.43492 * 102.23709 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0005 11 6 1.0788 -4.8022 0.0001 12 6 1.1718 -5.7441 -0.9057 13 6 2.3535 -5.7763 -1.8405 14 7 2.9751 -7.1022 -1.7962 15 6 4.0570 -7.3649 -2.5557 16 8 4.5156 -6.5038 -3.2763 17 6 4.6961 -8.7289 -2.5106 18 1 3.9754 -9.4830 -2.8270 19 6 5.1682 -9.0317 -1.0827 20 8 5.6728 -10.3674 -1.0491 21 6 6.5640 -10.7339 -2.0072 22 6 7.3301 -11.8764 -1.7983 23 6 8.2426 -12.2848 -2.7490 24 6 8.3965 -11.5566 -3.9169 25 9 9.2924 -11.9525 -4.8475 26 6 7.6365 -10.4207 -4.1268 27 6 6.7209 -10.0063 -3.1735 28 6 5.9149 -8.7596 -3.4362 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 2.6847 -3.7146 0.8895 32 1 2.6847 -3.7146 -0.8905 33 1 0.3002 -4.8467 0.7473 34 1 0.4018 -6.4973 -0.9826 35 1 3.0801 -5.0239 -1.5338 36 1 2.0190 -5.5656 -2.8563 37 1 2.6081 -7.7909 -1.2201 38 1 4.3305 -8.9382 -0.3915 39 1 5.9566 -8.3341 -0.8004 40 1 7.2104 -12.4453 -0.8882 41 1 8.8365 -13.1715 -2.5826 42 1 7.7572 -9.8539 -5.0383 43 1 5.5822 -8.7546 -4.4742 44 1 6.5337 -7.8817 -3.2501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699287353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:44 Heat of formation + Delta-G solvation = -62.878181 kcal Electronic energy + Delta-G solvation = -26983.083653 eV Core-core repulsion = 22815.868923 eV Total energy + Delta-G solvation = -4167.214731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.19321 -41.41329 -39.74018 -37.74917 -36.72359 -34.70129 -34.60810 -32.96461 -31.39676 -30.42077 -30.35461 -27.03207 -26.13176 -25.23876 -24.27068 -23.26757 -22.53479 -21.44669 -20.20936 -18.88187 -18.42330 -17.90999 -17.48074 -17.13872 -16.71726 -16.34782 -16.00867 -15.74232 -15.46698 -15.21569 -14.76107 -14.73722 -14.47646 -13.93359 -13.83725 -13.69133 -13.65104 -13.54769 -13.34831 -13.23535 -12.92600 -12.69821 -12.44557 -11.83330 -11.73209 -11.58677 -11.30847 -11.11804 -10.99680 -10.83984 -10.49033 -10.12538 -10.04312 -9.82121 -9.43305 -9.29785 -9.09265 -8.68147 -8.52511 -6.96146 -5.80471 -3.09890 0.66365 0.74340 2.15032 2.33547 2.69124 3.04942 3.15764 3.42095 3.48084 3.50218 3.81038 4.01162 4.09031 4.17521 4.30655 4.46333 4.58538 4.62558 4.68392 4.85022 4.93555 4.94991 5.01956 5.15598 5.21896 5.36486 5.42095 5.52545 5.59053 5.60821 5.66083 5.70065 5.79741 5.83569 5.89888 6.14605 6.21315 6.23377 6.46638 6.50588 6.80116 6.86671 7.06564 7.28734 7.67372 7.98159 8.37848 9.49439 10.04752 10.39939 11.42283 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.001771 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.519069 B =15806.828069 C =16395.992343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.106 4.106 12 C -0.202 4.202 13 C 0.139 3.861 14 N -0.721 5.721 15 C 0.518 3.482 16 O -0.529 6.529 17 C -0.147 4.147 18 H 0.114 0.886 19 C 0.071 3.929 20 O -0.306 6.306 21 C 0.119 3.881 22 C -0.117 4.117 23 C -0.122 4.122 24 C 0.067 3.933 25 F -0.141 7.141 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.062 4.062 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.094 0.906 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.046 -28.866 -4.232 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.372 5.372 10 C 0.034 3.966 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.018 3.982 14 N -0.372 5.372 15 C 0.303 3.697 16 O -0.405 6.405 17 C -0.168 4.168 18 H 0.132 0.868 19 C -0.004 4.004 20 O -0.220 6.220 21 C 0.074 3.926 22 C -0.136 4.136 23 C -0.141 4.141 24 C 0.048 3.952 25 F -0.119 7.119 26 C -0.136 4.136 27 C -0.127 4.127 28 C -0.099 4.099 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.112 0.888 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.473 -28.206 -4.641 31.188 hybrid contribution -0.126 0.694 -0.045 0.707 sum 12.347 -27.512 -4.686 30.518 Atomic orbital electron populations 1.69675 1.05141 1.25650 1.57601 1.24768 0.95577 0.97795 1.02817 0.86086 0.78826 0.83891 0.77214 1.20466 1.21776 1.21803 1.19287 0.91127 0.83954 1.42883 0.90994 1.42273 1.05910 0.99492 1.89522 1.20015 0.92993 0.84803 0.98741 1.23319 0.98995 0.94639 0.95638 1.22577 0.98877 1.02307 0.98374 1.20615 0.94183 0.83688 0.99754 1.46077 1.30419 1.15621 1.45090 1.20095 0.80513 0.88874 0.80240 1.90764 1.62622 1.47444 1.39634 1.22021 0.99452 0.97065 0.98288 0.86818 1.22998 1.00138 0.81995 0.95301 1.86052 1.56477 1.30859 1.48575 1.18719 0.90999 0.94954 0.87958 1.20439 0.95699 0.96789 1.00652 1.20935 0.99771 1.00817 0.92598 1.17503 0.92652 0.96480 0.88569 1.91503 1.65629 1.90506 1.64298 1.20888 0.96141 0.96051 1.00473 1.19688 1.00032 0.99021 0.93914 1.20354 0.94054 0.95003 1.00537 0.93496 0.78150 0.95406 0.94697 0.86819 0.86993 0.89113 0.90922 0.76645 0.86568 0.90531 0.84008 0.84047 0.84230 0.88799 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -18.40 5.59 -61.08 -0.34 -18.74 16 10 C 0.16 3.16 6.35 -5.19 -0.03 3.13 16 11 C -0.11 -1.62 9.63 -36.03 -0.35 -1.97 16 12 C -0.20 -2.50 9.63 -36.02 -0.35 -2.85 16 13 C 0.14 1.79 5.76 -5.19 -0.03 1.76 16 14 N -0.72 -6.92 5.43 -61.46 -0.33 -7.25 16 15 C 0.52 5.57 7.16 -10.99 -0.08 5.49 16 16 O -0.53 -8.03 15.81 5.55 0.09 -7.94 16 17 C -0.15 -1.12 2.76 -91.53 -0.25 -1.37 16 18 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 19 C 0.07 0.48 6.25 37.37 0.23 0.72 16 20 O -0.31 -2.48 10.27 -19.41 -0.20 -2.68 16 21 C 0.12 0.99 6.47 -39.21 -0.25 0.74 16 22 C -0.12 -0.83 9.93 -39.35 -0.39 -1.23 16 23 C -0.12 -0.85 10.02 -39.59 -0.40 -1.25 16 24 C 0.07 0.57 7.30 -39.47 -0.29 0.28 16 25 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 26 C -0.12 -0.95 9.64 -39.46 -0.38 -1.33 16 27 C -0.13 -1.05 5.75 -104.44 -0.60 -1.65 16 28 C -0.06 -0.52 4.66 -27.81 -0.13 -0.65 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.38 10.19 7.66 -40.82 -0.31 9.88 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.70 5.30 -51.93 -0.28 0.42 16 33 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.09 1.38 5.30 -51.93 -0.28 1.10 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.40 2.57 7.86 -40.82 -0.32 2.25 16 38 H 0.12 0.54 7.49 -51.93 -0.39 0.15 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.92 7.71 -51.93 -0.40 0.52 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -33.58 373.55 -8.70 -42.29 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.75 Total: 7.58 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.54 Total: -7.61 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.05 Total: -53.46 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.11 Total: -10.62 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.58 -8.70 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699287353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.593 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds