Wall clock time and date at job start Tue Mar 31 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00187 * 2 1 4 4 H 1.48497 * 109.47249 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47357 * 300.00666 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00209 * 3 2 1 7 7 C 1.38814 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99532 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00060 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47119 * 179.97438 * 10 9 7 12 12 C 1.31004 * 120.00004 * 127.00526 * 11 10 9 13 13 C 1.50709 * 119.99580 * 7.56209 * 12 11 10 14 14 N 1.46504 * 109.47039 * 127.15609 * 13 12 11 15 15 C 1.34772 * 119.99841 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99936 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00025 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.69539 * 60.55662 * 17 15 14 19 19 C 1.53408 * 109.69880 * 299.99753 * 17 15 14 20 20 O 1.42818 * 108.37707 * 175.53525 * 19 17 15 21 21 C 1.35894 * 117.86370 * 49.16694 * 20 19 17 22 22 C 1.39131 * 118.47031 * 163.00836 * 21 20 19 23 23 C 1.37966 * 120.25196 * 179.76103 * 22 21 20 24 24 C 1.38485 * 119.93188 * 359.92865 * 23 22 21 25 25 F 1.35103 * 120.03541 * 179.79834 * 24 23 22 26 26 C 1.38285 * 119.92775 * 0.08157 * 24 23 22 27 27 C 1.38354 * 121.79570 * 342.80938 * 21 20 19 28 28 C 1.50770 * 121.40643 * 0.46567 * 27 21 20 29 29 H 0.96996 * 119.99738 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00011 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46713 * 59.99897 * 10 9 7 32 32 H 1.08999 * 109.47032 * 300.00282 * 10 9 7 33 33 H 1.08003 * 120.00169 * 307.00779 * 11 10 9 34 34 H 1.07991 * 120.00556 * 187.55727 * 12 11 10 35 35 H 1.09002 * 109.47364 * 7.15476 * 13 12 11 36 36 H 1.09002 * 109.46984 * 247.15508 * 13 12 11 37 37 H 0.96997 * 120.00046 * 0.02562 * 14 13 12 38 38 H 1.09006 * 109.68282 * 55.81202 * 19 17 15 39 39 H 1.08999 * 109.71355 * 295.27621 * 19 17 15 40 40 H 1.07994 * 119.87434 * 359.72806 * 22 21 20 41 41 H 1.08007 * 120.03603 * 179.91784 * 23 22 21 42 42 H 1.08004 * 119.85287 * 180.02562 * 26 24 23 43 43 H 1.09004 * 109.44073 * 222.10550 * 28 27 21 44 44 H 1.08999 * 109.43492 * 102.23709 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0005 11 6 1.0788 -4.8022 0.0001 12 6 1.1718 -5.7441 -0.9057 13 6 2.3535 -5.7763 -1.8405 14 7 2.9751 -7.1022 -1.7962 15 6 4.0570 -7.3649 -2.5557 16 8 4.5156 -6.5038 -3.2763 17 6 4.6961 -8.7289 -2.5106 18 1 3.9754 -9.4830 -2.8270 19 6 5.1682 -9.0317 -1.0827 20 8 5.6728 -10.3674 -1.0491 21 6 6.5640 -10.7339 -2.0072 22 6 7.3301 -11.8764 -1.7983 23 6 8.2426 -12.2848 -2.7490 24 6 8.3965 -11.5566 -3.9169 25 9 9.2924 -11.9525 -4.8475 26 6 7.6365 -10.4207 -4.1268 27 6 6.7209 -10.0063 -3.1735 28 6 5.9149 -8.7596 -3.4362 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 2.6847 -3.7146 0.8895 32 1 2.6847 -3.7146 -0.8905 33 1 0.3002 -4.8467 0.7473 34 1 0.4018 -6.4973 -0.9826 35 1 3.0801 -5.0239 -1.5338 36 1 2.0190 -5.5656 -2.8563 37 1 2.6081 -7.7909 -1.2201 38 1 4.3305 -8.9382 -0.3915 39 1 5.9566 -8.3341 -0.8004 40 1 7.2104 -12.4453 -0.8882 41 1 8.8365 -13.1715 -2.5826 42 1 7.7572 -9.8539 -5.0383 43 1 5.5822 -8.7546 -4.4742 44 1 6.5337 -7.8817 -3.2501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699287353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:43 Heat of formation + Delta-G solvation = -84.954255 kcal Electronic energy + Delta-G solvation = -26984.040944 eV Core-core repulsion = 22815.868923 eV Total energy + Delta-G solvation = -4168.172021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.85836 -42.06862 -40.60396 -38.34963 -38.00604 -36.15600 -35.35169 -34.43691 -32.50444 -31.79794 -30.96357 -28.27261 -26.92859 -26.53947 -25.12329 -24.39217 -23.85447 -22.21807 -21.01830 -20.07280 -19.11551 -19.00904 -18.48200 -18.10743 -17.65865 -17.47188 -16.72364 -16.57001 -16.52377 -16.14311 -15.98207 -15.57333 -15.39284 -15.23937 -15.06956 -14.74766 -14.54339 -14.31451 -14.27153 -14.18493 -13.99005 -13.74799 -13.60742 -13.23552 -12.94884 -12.74593 -12.37977 -12.19398 -12.13933 -11.92533 -11.87610 -11.75563 -11.64393 -11.08428 -11.01139 -10.36217 -10.00596 -9.93880 -9.13852 -8.99870 -7.98826 -5.27978 0.08636 0.13744 1.04458 1.46162 1.46824 1.47302 1.57144 2.07166 2.26055 2.51697 2.55176 3.18915 3.34873 3.36540 3.48018 3.57341 3.72227 3.78617 3.87277 4.06897 4.08464 4.14926 4.17833 4.29034 4.35179 4.39546 4.45601 4.56069 4.63603 4.80398 4.82234 4.86767 4.91999 4.95973 5.07734 5.08884 5.13199 5.23220 5.33393 5.45447 5.60021 5.65328 5.86626 6.24285 6.27633 6.48467 7.16230 7.30271 8.04519 8.28540 9.24682 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.001771 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.519069 B =15806.828069 C =16395.992343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.742 5.742 10 C 0.160 3.840 11 C -0.135 4.135 12 C -0.158 4.158 13 C 0.140 3.860 14 N -0.704 5.704 15 C 0.520 3.480 16 O -0.578 6.578 17 C -0.134 4.134 18 H 0.136 0.864 19 C 0.071 3.929 20 O -0.307 6.307 21 C 0.109 3.891 22 C -0.117 4.117 23 C -0.117 4.117 24 C 0.050 3.950 25 F -0.149 7.149 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.061 4.061 29 H 0.252 0.748 30 H 0.376 0.624 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.419 0.581 38 H 0.143 0.857 39 H 0.070 0.930 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.144 0.856 43 H 0.092 0.908 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.188 -31.086 -3.605 33.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.385 5.385 10 C 0.034 3.966 11 C -0.154 4.154 12 C -0.177 4.177 13 C 0.017 3.983 14 N -0.357 5.357 15 C 0.307 3.693 16 O -0.457 6.457 17 C -0.155 4.155 18 H 0.154 0.846 19 C -0.005 4.005 20 O -0.221 6.221 21 C 0.063 3.937 22 C -0.135 4.135 23 C -0.135 4.135 24 C 0.031 3.969 25 F -0.128 7.128 26 C -0.143 4.143 27 C -0.134 4.134 28 C -0.099 4.099 29 H 0.061 0.939 30 H 0.208 0.792 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.257 0.743 38 H 0.161 0.839 39 H 0.088 0.912 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.162 0.838 43 H 0.110 0.890 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.633 -30.491 -3.985 33.244 hybrid contribution -0.102 1.260 -0.288 1.297 sum 12.531 -29.231 -4.273 32.089 Atomic orbital electron populations 1.69816 1.06536 1.26134 1.59266 1.25589 0.96491 1.01135 1.03485 0.85064 0.78161 0.79660 0.76821 1.19208 1.21939 1.21660 1.19666 0.91484 0.85358 1.41524 0.90814 1.42491 1.05712 1.00825 1.89432 1.20103 0.93803 0.84377 0.98272 1.23038 0.99448 0.94591 0.98301 1.22789 0.98296 1.01351 0.95301 1.20394 0.93974 0.84752 0.99215 1.45839 1.29937 1.14846 1.45057 1.20592 0.80115 0.89451 0.79177 1.90752 1.63991 1.49217 1.41741 1.21948 0.99270 0.95286 0.98982 0.84635 1.23127 1.00837 0.81516 0.94972 1.86060 1.56389 1.31201 1.48412 1.18939 0.91366 0.95422 0.87947 1.20712 0.95067 0.96420 1.01318 1.21206 0.99517 1.01095 0.91703 1.17729 0.92959 0.97044 0.89153 1.91479 1.65969 1.90611 1.64733 1.21007 0.96223 0.96271 1.00816 1.19661 1.00359 0.99061 0.94296 1.20292 0.94264 0.94535 1.00783 0.93872 0.79242 0.95703 0.94899 0.85836 0.83106 0.91782 0.91915 0.74274 0.83904 0.91210 0.81936 0.81804 0.83807 0.88958 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -38.05 5.59 -347.17 -1.94 -39.99 16 10 C 0.16 6.30 6.35 85.63 0.54 6.84 16 11 C -0.13 -3.91 9.63 25.64 0.25 -3.66 16 12 C -0.16 -3.49 9.63 25.65 0.25 -3.24 16 13 C 0.14 3.41 5.76 85.64 0.49 3.90 16 14 N -0.70 -11.94 5.43 -466.76 -2.53 -14.47 16 15 C 0.52 10.58 7.16 87.66 0.63 11.21 16 16 O -0.58 -17.75 15.81 -3.05 -0.05 -17.80 16 17 C -0.13 -1.81 2.76 -11.38 -0.03 -1.84 16 18 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 19 C 0.07 0.80 6.25 72.12 0.45 1.25 16 20 O -0.31 -4.22 10.27 -92.36 -0.95 -5.16 16 21 C 0.11 1.62 6.47 22.51 0.15 1.76 16 22 C -0.12 -1.40 9.93 22.42 0.22 -1.18 16 23 C -0.12 -1.41 10.02 22.26 0.22 -1.19 16 24 C 0.05 0.81 7.30 22.34 0.16 0.97 16 25 F -0.15 -2.71 17.27 44.97 0.78 -1.93 16 26 C -0.12 -1.99 9.64 22.35 0.22 -1.78 16 27 C -0.13 -2.11 5.75 -19.75 -0.11 -2.22 16 28 C -0.06 -1.01 4.66 29.89 0.14 -0.87 16 29 H 0.25 14.94 8.31 -92.71 -0.77 14.16 16 30 H 0.38 20.28 7.66 -92.71 -0.71 19.57 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.03 1.33 5.30 -2.39 -0.01 1.32 16 33 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.15 2.29 8.06 -2.92 -0.02 2.27 16 35 H 0.06 1.95 5.30 -2.39 -0.01 1.94 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 37 H 0.42 3.83 7.86 -92.71 -0.73 3.10 16 38 H 0.14 0.81 7.49 -2.38 -0.02 0.80 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 42 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.58 7.71 -2.39 -0.02 1.56 16 Total: -1.00 -74.02 373.55 2.11 -71.91 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.39 Total: 25.08 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 4.88 Total: -7.19 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -4.19 Total: -113.56 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -1.00 Total: -22.97 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -74.02 2.11 -71.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699287353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.041 kcal (2) G-P(sol) polarization free energy of solvation -74.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds