Wall clock time and date at job start Tue Mar 31 2020 17:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99724 * 2 1 4 4 C 1.53002 * 109.47174 * 180.02562 * 3 2 1 5 5 S 1.81394 * 109.47305 * 180.02562 * 4 3 2 6 6 O 1.42099 * 108.58299 * 65.51281 * 5 4 3 7 7 O 1.42099 * 108.57622 * 294.48251 * 5 4 3 8 8 C 1.81401 * 101.92242 * 180.02562 * 5 4 3 9 9 C 1.50696 * 109.47248 * 179.97438 * 8 5 4 10 10 O 1.21280 * 120.00124 * 359.97438 * 9 8 5 11 11 N 1.34783 * 120.00188 * 180.02562 * 9 8 5 12 12 C 1.46503 * 119.99973 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46758 * 179.97438 * 12 11 9 14 14 H 1.09003 * 112.84868 * 316.19372 * 13 12 11 15 15 C 1.53780 * 113.61485 * 87.50468 * 13 12 11 16 16 C 1.53778 * 87.08092 * 139.97987 * 15 13 12 17 17 H 1.08998 * 113.68905 * 220.01231 * 16 15 13 18 18 N 1.46499 * 113.61557 * 89.11527 * 16 15 13 19 19 C 1.36939 * 119.99933 * 107.77738 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47080 * 120.00466 * 23 21 19 26 26 H 1.48506 * 109.47018 * 240.00565 * 23 21 19 27 27 C 1.53783 * 113.61069 * 185.00291 * 13 12 11 28 28 H 1.08998 * 109.47849 * 60.00091 * 1 2 3 29 29 H 1.09009 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47372 * 299.99790 * 1 2 3 31 31 H 1.08999 * 109.46943 * 60.00741 * 3 2 1 32 32 H 1.08994 * 109.47562 * 299.99962 * 3 2 1 33 33 H 1.08999 * 109.47168 * 59.99831 * 4 3 2 34 34 H 1.09007 * 109.46935 * 300.00472 * 4 3 2 35 35 H 1.09003 * 109.47364 * 59.99618 * 8 5 4 36 36 H 1.09004 * 109.47273 * 299.99587 * 8 5 4 37 37 H 0.96995 * 119.99654 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.47210 * 59.99561 * 12 11 9 39 39 H 1.08991 * 109.46962 * 299.99561 * 12 11 9 40 40 H 1.08998 * 113.61038 * 25.43021 * 15 13 12 41 41 H 1.08998 * 113.61309 * 254.52603 * 15 13 12 42 42 H 0.97001 * 119.99790 * 287.49711 * 18 16 15 43 43 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.61551 * 105.47086 * 27 13 12 45 45 H 1.09004 * 113.69000 * 334.57222 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 16 4.2731 2.8419 0.0001 6 8 3.9477 3.4819 1.2264 7 8 3.9468 3.4833 -1.2252 8 6 6.0470 2.4624 -0.0016 9 6 6.8354 3.7466 -0.0018 10 8 6.2577 4.8130 -0.0014 11 7 8.1828 3.7102 -0.0035 12 6 8.9493 4.9588 -0.0043 13 6 10.4454 4.6386 -0.0056 14 1 10.7082 3.8412 0.6896 15 6 11.0337 4.4496 -1.4138 16 6 12.2687 5.2186 -0.9155 17 1 12.6758 5.9152 -1.6483 18 7 13.2931 4.3593 -0.3170 19 6 14.4646 4.1230 -0.9855 20 1 14.6315 4.5666 -1.9560 21 6 15.4377 3.3134 -0.4158 22 7 15.2341 2.7725 0.7667 23 14 17.0355 2.9905 -1.3281 24 1 17.0172 3.7085 -2.6278 25 1 18.1779 3.4741 -0.5119 26 1 17.1816 1.5325 -1.5696 27 6 11.3416 5.8824 0.1164 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8566 0.6440 -0.8908 34 1 3.8573 0.6436 0.8891 35 1 6.2941 1.8846 -0.8922 36 1 6.2955 1.8832 0.8878 37 1 8.6448 2.8574 -0.0042 38 1 8.7025 5.5372 0.8861 39 1 8.7004 5.5373 -0.8938 40 1 10.4786 4.9724 -2.1926 41 1 11.2394 3.4091 -1.6650 42 1 13.1432 3.9610 0.5547 43 1 15.9140 2.2065 1.1646 44 1 11.7958 5.9985 1.1005 45 1 10.8718 6.7977 -0.2437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707085715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:30 Heat of formation + Delta-G solvation = -116.684007 kcal Electronic energy + Delta-G solvation = -25938.678032 eV Core-core repulsion = 21892.201267 eV Total energy + Delta-G solvation = -4046.476765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.08822 -38.62177 -38.51706 -37.35573 -36.36908 -34.91683 -33.32122 -32.55372 -31.29219 -30.03561 -27.23889 -27.02338 -25.12665 -24.09190 -23.70870 -21.86762 -21.06278 -19.27856 -18.55590 -17.90152 -17.68793 -17.18079 -17.12971 -16.78431 -16.41499 -15.96888 -15.75027 -15.54553 -15.26992 -14.95295 -14.36546 -14.23389 -14.17171 -13.75597 -13.62482 -12.96714 -12.91695 -12.82354 -12.40953 -12.37948 -12.33288 -12.30083 -12.00812 -11.98810 -11.53888 -11.47735 -11.20019 -11.09831 -10.91135 -10.63501 -10.50738 -10.32355 -10.17792 -9.96344 -9.75297 -9.57514 -9.21797 -8.94865 -7.05972 -5.86470 -3.15602 -0.64306 2.18143 2.25400 2.65740 3.04489 3.37592 3.43975 3.45860 3.54927 3.56369 4.03349 4.07089 4.16891 4.42183 4.50917 4.60584 4.68046 4.78104 4.79191 4.94023 4.95932 4.96930 5.05104 5.15097 5.15166 5.39592 5.52812 5.61987 5.77696 5.86786 6.00884 6.15146 6.19195 6.31090 6.45483 6.51494 6.67045 6.81779 6.97204 7.14002 7.64591 7.80081 8.32754 9.43667 10.00676 10.34846 11.35985 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.001779 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.206873 B =15733.074147 C =16431.952463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.073 3.927 4 C -0.629 4.629 5 S 2.460 3.540 6 O -0.914 6.914 7 O -0.914 6.914 8 C -0.658 4.658 9 C 0.538 3.462 10 O -0.534 6.534 11 N -0.709 5.709 12 C 0.126 3.874 13 C -0.121 4.121 14 H 0.094 0.906 15 C -0.169 4.169 16 C 0.167 3.833 17 H 0.063 0.937 18 N -0.706 5.706 19 C -0.243 4.243 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.148 4.148 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.407 0.593 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.069 0.931 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.004 -5.406 -0.827 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.302 6.302 3 C -0.004 4.004 4 C -0.755 4.755 5 S 2.636 3.364 6 O -0.912 6.912 7 O -0.911 6.911 8 C -0.786 4.786 9 C 0.321 3.679 10 O -0.412 6.412 11 N -0.359 5.359 12 C 0.003 3.997 13 C -0.139 4.139 14 H 0.112 0.888 15 C -0.210 4.210 16 C 0.055 3.945 17 H 0.081 0.919 18 N -0.344 5.344 19 C -0.374 4.374 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.187 4.187 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.242 0.758 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.492 -4.011 -0.938 27.799 hybrid contribution 1.373 -1.726 -0.104 2.208 sum -26.119 -5.738 -1.042 26.762 Atomic orbital electron populations 1.22855 0.80197 1.03355 1.00632 1.87907 1.20347 1.26445 1.95550 1.22034 0.89402 0.86687 1.02314 1.30645 1.06074 1.25806 1.13009 1.07193 0.76844 0.76444 0.75933 1.93601 1.81246 1.70550 1.45753 1.93601 1.81230 1.70498 1.45817 1.30823 1.26440 1.07461 1.13903 1.19052 0.83495 0.88229 0.77093 1.90867 1.69518 1.30658 1.50143 1.45933 1.05185 1.11264 1.73525 1.21661 0.90608 0.85009 1.02435 1.22737 0.90940 1.00298 0.99971 0.88759 1.23906 1.00417 1.02287 0.94408 1.21058 0.87776 0.91925 0.93788 0.91855 1.42177 1.15202 1.55613 1.21429 1.19346 0.93002 1.24352 1.00663 0.90898 1.24766 0.98825 1.00314 0.96963 1.69672 1.34974 1.36968 1.16450 0.86094 0.83581 0.77572 0.78794 1.20468 1.21802 1.21855 1.23456 0.97681 0.96038 1.01568 0.93501 0.89070 0.93494 0.91271 0.91275 0.83890 0.83899 0.81916 0.81928 0.75803 0.91190 0.90941 0.91272 0.91466 0.78132 0.93479 0.91225 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.38 -2.99 10.70 -35.23 -0.38 -3.37 16 3 C 0.07 0.50 5.95 37.16 0.22 0.73 16 4 C -0.63 -3.19 6.17 37.16 0.23 -2.96 16 5 S 2.46 21.41 3.96 -107.50 -0.43 20.98 16 6 O -0.91 -11.40 17.95 -59.50 -1.07 -12.47 16 7 O -0.91 -11.42 17.94 -59.55 -1.07 -12.49 16 8 C -0.66 -4.27 6.29 36.00 0.23 -4.04 16 9 C 0.54 6.42 7.85 -10.98 -0.09 6.34 16 10 O -0.53 -8.68 15.62 2.55 0.04 -8.64 16 11 N -0.71 -7.76 5.56 -60.29 -0.33 -8.10 16 12 C 0.13 1.58 5.51 -4.04 -0.02 1.56 16 13 C -0.12 -1.68 3.63 -89.80 -0.33 -2.01 16 14 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 15 C -0.17 -2.65 7.43 -25.92 -0.19 -2.84 16 16 C 0.17 3.13 4.56 -67.12 -0.31 2.82 16 17 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 18 N -0.71 -16.83 5.31 -52.64 -0.28 -17.11 16 19 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 23 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C -0.15 -2.26 7.39 -25.91 -0.19 -2.45 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.14 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.14 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.16 0.47 8.14 -51.92 -0.42 0.04 16 36 H 0.16 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.41 3.47 8.47 -40.82 -0.35 3.13 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16 40 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.38 9.69 7.90 -40.82 -0.32 9.37 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -38.51 392.53 -8.85 -47.36 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.37 Total: 6.43 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 0.42 Total: -8.73 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.11 Total: -51.74 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -2.47 Total: -36.97 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 21.41 SS G_CDS: -0.43 Total: 20.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.51 -8.85 -47.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707085715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.327 kcal (2) G-P(sol) polarization free energy of solvation -38.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds