Wall clock time and date at job start Tue Mar 31 2020 17:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99724 * 2 1 4 4 C 1.53002 * 109.47174 * 180.02562 * 3 2 1 5 5 S 1.81394 * 109.47305 * 180.02562 * 4 3 2 6 6 O 1.42099 * 108.58299 * 65.51281 * 5 4 3 7 7 O 1.42099 * 108.57622 * 294.48251 * 5 4 3 8 8 C 1.81401 * 101.92242 * 180.02562 * 5 4 3 9 9 C 1.50696 * 109.47248 * 179.97438 * 8 5 4 10 10 O 1.21280 * 120.00124 * 359.97438 * 9 8 5 11 11 N 1.34783 * 120.00188 * 180.02562 * 9 8 5 12 12 C 1.46503 * 119.99973 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46758 * 179.97438 * 12 11 9 14 14 H 1.09003 * 112.84868 * 316.19372 * 13 12 11 15 15 C 1.53780 * 113.61485 * 87.50468 * 13 12 11 16 16 C 1.53778 * 87.08092 * 139.97987 * 15 13 12 17 17 H 1.08998 * 113.68905 * 220.01231 * 16 15 13 18 18 N 1.46499 * 113.61557 * 89.11527 * 16 15 13 19 19 C 1.36939 * 119.99933 * 107.77738 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47080 * 120.00466 * 23 21 19 26 26 H 1.48506 * 109.47018 * 240.00565 * 23 21 19 27 27 C 1.53783 * 113.61069 * 185.00291 * 13 12 11 28 28 H 1.08998 * 109.47849 * 60.00091 * 1 2 3 29 29 H 1.09009 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47372 * 299.99790 * 1 2 3 31 31 H 1.08999 * 109.46943 * 60.00741 * 3 2 1 32 32 H 1.08994 * 109.47562 * 299.99962 * 3 2 1 33 33 H 1.08999 * 109.47168 * 59.99831 * 4 3 2 34 34 H 1.09007 * 109.46935 * 300.00472 * 4 3 2 35 35 H 1.09003 * 109.47364 * 59.99618 * 8 5 4 36 36 H 1.09004 * 109.47273 * 299.99587 * 8 5 4 37 37 H 0.96995 * 119.99654 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.47210 * 59.99561 * 12 11 9 39 39 H 1.08991 * 109.46962 * 299.99561 * 12 11 9 40 40 H 1.08998 * 113.61038 * 25.43021 * 15 13 12 41 41 H 1.08998 * 113.61309 * 254.52603 * 15 13 12 42 42 H 0.97001 * 119.99790 * 287.49711 * 18 16 15 43 43 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.61551 * 105.47086 * 27 13 12 45 45 H 1.09004 * 113.69000 * 334.57222 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 16 4.2731 2.8419 0.0001 6 8 3.9477 3.4819 1.2264 7 8 3.9468 3.4833 -1.2252 8 6 6.0470 2.4624 -0.0016 9 6 6.8354 3.7466 -0.0018 10 8 6.2577 4.8130 -0.0014 11 7 8.1828 3.7102 -0.0035 12 6 8.9493 4.9588 -0.0043 13 6 10.4454 4.6386 -0.0056 14 1 10.7082 3.8412 0.6896 15 6 11.0337 4.4496 -1.4138 16 6 12.2687 5.2186 -0.9155 17 1 12.6758 5.9152 -1.6483 18 7 13.2931 4.3593 -0.3170 19 6 14.4646 4.1230 -0.9855 20 1 14.6315 4.5666 -1.9560 21 6 15.4377 3.3134 -0.4158 22 7 15.2341 2.7725 0.7667 23 14 17.0355 2.9905 -1.3281 24 1 17.0172 3.7085 -2.6278 25 1 18.1779 3.4741 -0.5119 26 1 17.1816 1.5325 -1.5696 27 6 11.3416 5.8824 0.1164 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8566 0.6440 -0.8908 34 1 3.8573 0.6436 0.8891 35 1 6.2941 1.8846 -0.8922 36 1 6.2955 1.8832 0.8878 37 1 8.6448 2.8574 -0.0042 38 1 8.7025 5.5372 0.8861 39 1 8.7004 5.5373 -0.8938 40 1 10.4786 4.9724 -2.1926 41 1 11.2394 3.4091 -1.6650 42 1 13.1432 3.9610 0.5547 43 1 15.9140 2.2065 1.1646 44 1 11.7958 5.9985 1.1005 45 1 10.8718 6.7977 -0.2437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707085715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:28 Heat of formation + Delta-G solvation = -149.242745 kcal Electronic energy + Delta-G solvation = -25940.089884 eV Core-core repulsion = 21892.201267 eV Total energy + Delta-G solvation = -4047.888617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.08522 -39.92153 -38.99158 -38.11768 -37.12472 -36.13501 -35.03899 -33.01290 -32.37361 -31.51728 -28.38128 -27.47977 -26.43416 -25.67515 -24.53555 -23.16716 -21.97659 -20.00945 -19.81934 -19.34513 -18.59206 -18.27372 -17.67737 -17.53022 -17.04723 -16.78670 -16.58514 -16.48846 -16.35825 -15.86417 -15.78926 -15.57368 -14.95147 -14.78513 -14.63694 -14.57466 -13.90739 -13.58447 -13.28290 -13.20949 -13.19203 -13.12309 -12.95057 -12.92032 -12.70558 -12.66342 -12.48420 -12.16320 -12.12582 -12.04559 -11.74000 -11.70592 -11.48490 -11.28830 -10.93664 -10.80292 -10.78213 -10.21404 -8.99345 -7.95511 -5.23352 -1.25867 1.32361 1.48393 1.49384 1.58957 1.68684 1.89696 2.50533 2.56003 2.99494 3.01191 3.37323 3.44035 3.58064 3.71123 3.72583 3.78092 3.87222 3.96885 4.14884 4.17533 4.28953 4.32504 4.39675 4.42326 4.46256 4.55238 4.71023 4.71175 4.74342 4.84387 4.93835 4.99888 5.10445 5.21393 5.34524 5.45084 5.53793 5.66271 6.00908 6.27843 6.28685 6.97048 7.33954 8.10879 8.33321 9.27835 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.001779 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.206873 B =15733.074147 C =16431.952463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.399 6.399 3 C 0.055 3.945 4 C -0.601 4.601 5 S 2.451 3.549 6 O -0.967 6.967 7 O -0.967 6.967 8 C -0.643 4.643 9 C 0.525 3.475 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.131 3.869 13 C -0.101 4.101 14 H 0.087 0.913 15 C -0.153 4.153 16 C 0.142 3.858 17 H 0.058 0.942 18 N -0.719 5.719 19 C -0.241 4.241 20 H 0.076 0.924 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.296 1.296 26 H -0.293 1.293 27 C -0.137 4.137 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.208 0.792 36 H 0.208 0.792 37 H 0.421 0.579 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.560 -7.028 -1.631 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.319 6.319 3 C -0.023 4.023 4 C -0.731 4.731 5 S 2.634 3.366 6 O -0.964 6.964 7 O -0.964 6.964 8 C -0.773 4.773 9 C 0.311 3.689 10 O -0.467 6.467 11 N -0.353 5.353 12 C 0.008 3.992 13 C -0.120 4.120 14 H 0.106 0.894 15 C -0.193 4.193 16 C 0.032 3.968 17 H 0.077 0.923 18 N -0.357 5.357 19 C -0.373 4.373 20 H 0.094 0.906 21 C -0.266 4.266 22 N -0.619 5.619 23 Si 0.801 3.199 24 H -0.191 1.191 25 H -0.223 1.223 26 H -0.221 1.221 27 C -0.176 4.176 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.225 0.775 36 H 0.225 0.775 37 H 0.258 0.742 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -28.083 -5.584 -1.778 28.688 hybrid contribution 1.483 -1.221 0.116 1.925 sum -26.600 -6.805 -1.662 27.507 Atomic orbital electron populations 1.23070 0.79084 1.04508 1.01323 1.87860 1.21713 1.26632 1.95678 1.22237 0.90669 0.86734 1.02624 1.30347 1.04532 1.22186 1.16061 1.06948 0.77859 0.77797 0.73983 1.93539 1.82530 1.73304 1.47070 1.93539 1.82513 1.73250 1.47118 1.30716 1.22736 1.05501 1.18319 1.19867 0.83698 0.89449 0.75879 1.90856 1.70438 1.33129 1.52283 1.45850 1.05137 1.11322 1.72960 1.21458 0.89565 0.85886 1.02314 1.22505 0.91717 0.99234 0.98523 0.89445 1.23712 0.98628 1.01051 0.95926 1.21393 0.88039 0.92267 0.95103 0.92345 1.42290 1.15714 1.56569 1.21138 1.19707 0.93882 1.23108 1.00627 0.90609 1.25511 1.02014 1.01091 0.97971 1.69810 1.35806 1.38245 1.18008 0.85106 0.79711 0.77102 0.78030 1.19136 1.22286 1.22071 1.23368 0.96831 0.97516 0.99916 0.92857 0.87734 0.92857 0.91214 0.91207 0.80903 0.80919 0.77489 0.77493 0.74180 0.91505 0.91051 0.89081 0.92877 0.79282 0.94044 0.92352 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 11.01 113.37 1.25 1.39 16 2 O -0.40 -5.44 10.70 -148.98 -1.59 -7.04 16 3 C 0.06 0.67 5.95 71.98 0.43 1.10 16 4 C -0.60 -4.22 6.17 71.98 0.44 -3.78 16 5 S 2.45 39.86 3.96 -56.49 -0.22 39.64 16 6 O -0.97 -24.48 17.95 -125.77 -2.26 -26.74 16 7 O -0.97 -24.43 17.94 -125.72 -2.26 -26.69 16 8 C -0.64 -6.10 6.29 71.23 0.45 -5.65 16 9 C 0.53 11.56 7.85 87.65 0.69 12.25 16 10 O -0.59 -19.03 15.62 -0.16 0.00 -19.03 16 11 N -0.70 -13.70 5.56 -463.05 -2.57 -16.28 16 12 C 0.13 3.08 5.51 86.38 0.48 3.55 16 13 C -0.10 -2.65 3.63 -10.27 -0.04 -2.69 16 14 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 15 C -0.15 -4.51 7.43 31.12 0.23 -4.28 16 16 C 0.14 5.20 4.56 45.52 0.21 5.41 16 17 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 18 N -0.72 -34.32 5.31 -320.45 -1.70 -36.03 16 19 C -0.24 -12.93 9.97 84.03 0.84 -12.10 16 20 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 22 N -0.97 -57.26 13.06 21.65 0.28 -56.97 16 23 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 27 C -0.14 -4.01 7.39 31.12 0.23 -3.78 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.17 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.17 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.21 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.21 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.42 5.84 8.47 -92.71 -0.79 5.06 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.72 7.84 -2.39 -0.02 1.71 16 40 H 0.09 2.32 7.90 -2.39 -0.02 2.30 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.37 19.11 7.90 -92.71 -0.73 18.38 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.10 2.53 8.10 -2.38 -0.02 2.51 16 Total: -1.00 -87.36 392.53 -3.15 -90.51 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.52 Total: 23.93 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 5.67 Total: -12.20 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -3.99 Total: -109.28 kcal Atomic # 8 Polarization: -73.39 SS G_CDS: -6.11 Total: -79.50 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 39.86 SS G_CDS: -0.22 Total: 39.64 kcal Total: -87.36 -3.15 -90.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707085715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.730 kcal (2) G-P(sol) polarization free energy of solvation -87.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds