Wall clock time and date at job start Tue Mar 31 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 119.99493 * 2 1 4 4 H 1.48503 * 109.47086 * 240.00057 * 3 2 1 5 5 H 1.48503 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47243 * 119.99995 * 3 2 1 7 7 C 1.38795 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99630 * 180.27659 * 7 2 1 9 9 S 1.76199 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47042 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99945 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99776 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99565 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.85104 * 25.33641 * 14 13 11 16 16 C 1.53782 * 113.61009 * 156.52420 * 14 13 11 17 17 C 1.53786 * 87.08006 * 139.98138 * 16 14 13 18 18 H 1.09002 * 113.61213 * 89.19700 * 17 16 14 19 19 N 1.46899 * 113.61768 * 220.01818 * 17 16 14 20 20 C 1.46901 * 110.99935 * 205.00033 * 19 17 16 21 21 C 1.53002 * 109.46978 * 180.02562 * 20 19 17 22 22 C 1.50692 * 109.47060 * 179.97438 * 21 20 19 23 23 C 1.38236 * 120.00291 * 269.72494 * 22 21 20 24 24 C 1.38232 * 120.00069 * 179.81121 * 23 22 21 25 25 C 1.38234 * 120.00086 * 0.42241 * 24 23 22 26 26 C 1.38229 * 120.00106 * 359.80915 * 25 24 23 27 27 C 1.38237 * 119.99858 * 89.99911 * 22 21 20 28 28 C 1.53778 * 113.61383 * 254.13155 * 14 13 11 29 29 H 0.96991 * 120.00676 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47385 * 299.99958 * 10 9 7 31 31 H 1.09005 * 109.47046 * 60.00120 * 10 9 7 32 32 H 0.96993 * 120.00370 * 359.97438 * 13 11 10 33 33 H 1.09004 * 113.62053 * 254.52658 * 16 14 13 34 34 H 1.09000 * 113.61695 * 25.44013 * 16 14 13 35 35 H 1.00905 * 110.99696 * 81.04577 * 19 17 16 36 36 H 1.09003 * 109.47061 * 300.00062 * 20 19 17 37 37 H 1.08997 * 109.47271 * 60.00383 * 20 19 17 38 38 H 1.09004 * 109.47066 * 300.00390 * 21 20 19 39 39 H 1.09005 * 109.47273 * 59.99460 * 21 20 19 40 40 H 1.08003 * 119.99692 * 359.97438 * 23 22 21 41 41 H 1.08004 * 119.99635 * 180.20516 * 24 23 22 42 42 H 1.08000 * 119.99867 * 179.79485 * 25 24 23 43 43 H 1.07998 * 120.00487 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00384 * 359.97438 * 27 22 21 45 45 H 1.08997 * 113.61614 * 334.57138 * 28 14 13 46 46 H 1.09000 * 113.61109 * 105.47779 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 0.0040 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3026 -0.0012 12 8 0.7915 -5.5023 -0.0011 13 7 2.8446 -6.3429 -0.0008 14 6 2.3309 -7.7150 -0.0008 15 1 1.3324 -7.7931 -0.4310 16 6 3.3256 -8.7450 -0.5617 17 6 2.8604 -9.6882 0.5604 18 1 2.0071 -10.3077 0.2842 19 7 3.9514 -10.4594 1.1711 20 6 3.4474 -11.7048 1.7651 21 6 4.6098 -12.4785 2.3904 22 6 4.0927 -13.7558 3.0003 23 6 3.6810 -13.7745 4.3198 24 6 3.2030 -14.9452 4.8782 25 6 3.1449 -16.0993 4.1197 26 6 3.5611 -16.0819 2.8016 27 6 4.0354 -14.9102 2.2420 28 6 2.4752 -8.4268 1.3546 29 1 -0.4851 0.8399 0.0004 30 1 3.1247 -3.7312 -0.8905 31 1 3.1247 -3.7311 0.8895 32 1 3.8013 -6.1833 -0.0004 33 1 3.0720 -9.0975 -1.5615 34 1 4.3680 -8.4397 -0.4711 35 1 4.4460 -9.9066 1.8552 36 1 2.7127 -11.4688 2.5350 37 1 2.9799 -12.3134 0.9911 38 1 5.3449 -12.7144 1.6208 39 1 5.0771 -11.8697 3.1644 40 1 3.7304 -12.8737 4.9137 41 1 2.8783 -14.9589 5.9082 42 1 2.7745 -17.0148 4.5569 43 1 3.5161 -16.9837 2.2091 44 1 4.3608 -14.8966 1.2123 45 1 3.2847 -8.0342 1.9700 46 1 1.5361 -8.5227 1.8996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713186453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:07 Heat of formation + Delta-G solvation = -2.425513 kcal Electronic energy + Delta-G solvation = -24022.788637 eV Core-core repulsion = 20424.408507 eV Total energy + Delta-G solvation = -3598.380130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11043 -39.66626 -38.30751 -35.74002 -33.43612 -32.42505 -32.02050 -31.29038 -29.20156 -27.98375 -25.87420 -25.49724 -23.93598 -22.98300 -22.72659 -21.35706 -20.36377 -19.92689 -17.78886 -17.22630 -16.62355 -16.30552 -16.15747 -15.70564 -15.52175 -15.06870 -14.80539 -14.72840 -14.39884 -14.21974 -13.80762 -13.77565 -13.29087 -13.17423 -13.03380 -12.92938 -12.66973 -12.57602 -12.26016 -11.88601 -11.71734 -11.52928 -11.38146 -11.28643 -11.04787 -11.03669 -10.92071 -10.88801 -10.73270 -9.81596 -9.36683 -9.32919 -9.10333 -9.05952 -8.91216 -8.63916 -8.23614 -6.49640 -6.21122 -3.91844 0.93736 0.99447 3.04411 3.08026 3.23737 3.27737 3.30909 3.35842 3.66111 3.88558 4.20984 4.32135 4.39678 4.46254 4.53491 4.62448 4.66933 4.72591 4.73790 4.78808 4.90810 5.11295 5.13878 5.14090 5.15712 5.20373 5.35348 5.48008 5.51251 5.55120 5.60765 5.65130 5.66381 5.71815 5.81459 5.81844 5.89916 6.05063 6.08022 6.11686 6.14734 6.23099 6.60046 6.68344 6.71608 7.00994 7.59526 7.74138 8.35338 8.62965 9.23995 10.86271 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.033953 B = 0.001416 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.479327 B =19774.163075 C =19917.210097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.727 5.727 14 C 0.127 3.873 15 H 0.113 0.887 16 C -0.133 4.133 17 C 0.069 3.931 18 H 0.099 0.901 19 N -0.678 5.678 20 C 0.064 3.936 21 C -0.080 4.080 22 C -0.080 4.080 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.116 4.116 28 C -0.180 4.180 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.343 0.657 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.086 0.914 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.185 -31.132 5.789 33.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.380 5.380 14 C 0.021 3.979 15 H 0.131 0.869 16 C -0.172 4.172 17 C -0.042 4.042 18 H 0.117 0.883 19 N -0.307 5.307 20 C -0.065 4.065 21 C -0.118 4.118 22 C -0.080 4.080 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.137 4.137 27 C -0.134 4.134 28 C -0.221 4.221 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.233 0.767 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.162 0.838 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.104 0.896 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.193 -31.650 5.191 33.364 hybrid contribution 1.960 1.661 0.897 2.721 sum 11.153 -29.989 6.087 32.570 Atomic orbital electron populations 1.70006 1.05954 1.27568 1.46790 1.24985 0.95017 0.99001 0.94514 0.86229 0.79242 0.81253 0.78800 1.19920 1.20800 1.19958 1.22834 0.94880 0.91697 1.59068 0.90986 1.85390 1.04968 0.96306 1.96722 1.23543 1.06556 0.95492 1.04897 1.20352 0.86610 0.86385 0.74799 1.90691 1.15427 1.85610 1.47544 1.45961 1.09710 1.05095 1.77233 1.22222 0.99289 0.80299 0.96085 0.86868 1.23449 0.99902 0.95034 0.98790 1.22857 0.93333 0.92105 0.95891 0.88296 1.60448 1.26115 1.06895 1.37287 1.21960 0.95704 0.91134 0.97682 1.20588 0.97973 0.93053 1.00186 1.19858 0.98962 0.95205 0.94021 1.21097 0.99307 0.98229 0.94916 1.21171 0.99565 0.93004 0.99948 1.21169 1.00360 0.98328 0.94550 1.21174 0.98994 0.98108 0.95446 1.21102 1.00001 0.92463 0.99836 1.24228 1.02608 0.97106 0.98165 0.92129 0.89207 0.89277 0.76746 0.90643 0.89187 0.83813 0.94904 0.90804 0.89988 0.91040 0.86143 0.86099 0.86195 0.86090 0.85955 0.89579 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 9.92 7.85 -10.98 -0.09 9.83 16 12 O -0.52 -11.80 15.48 5.56 0.09 -11.71 16 13 N -0.73 -9.57 5.36 -53.02 -0.28 -9.85 16 14 C 0.13 1.46 4.21 -67.12 -0.28 1.17 16 15 H 0.11 1.52 7.50 -51.93 -0.39 1.13 16 16 C -0.13 -1.14 7.63 -25.92 -0.20 -1.34 16 17 C 0.07 0.56 4.18 -66.80 -0.28 0.28 16 18 H 0.10 0.80 7.87 -51.93 -0.41 0.39 16 19 N -0.68 -4.86 6.62 -105.76 -0.70 -5.56 16 20 C 0.06 0.44 5.51 -3.82 -0.02 0.41 16 21 C -0.08 -0.49 5.61 -27.89 -0.16 -0.64 16 22 C -0.08 -0.55 5.13 -104.63 -0.54 -1.09 16 23 C -0.12 -0.81 9.70 -39.58 -0.38 -1.20 16 24 C -0.12 -0.78 10.05 -39.59 -0.40 -1.18 16 25 C -0.13 -0.80 10.05 -39.59 -0.40 -1.20 16 26 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 27 C -0.12 -0.78 9.70 -39.58 -0.38 -1.17 16 28 C -0.18 -1.74 7.51 -25.83 -0.19 -1.94 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 32 H 0.40 4.09 8.71 -40.82 -0.36 3.74 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.34 2.25 8.20 -39.29 -0.32 1.92 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 38 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 39 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.09 0.79 7.83 -51.93 -0.41 0.38 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -34.35 400.09 -12.00 -46.35 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.34 Total: 2.85 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.30 Total: -15.13 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.25 Total: -40.92 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.35 -12.00 -46.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713186453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.926 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds