Wall clock time and date at job start Tue Mar 31 2020 18:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 119.99493 * 2 1 4 4 H 1.48503 * 109.47086 * 240.00057 * 3 2 1 5 5 H 1.48503 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47243 * 119.99995 * 3 2 1 7 7 C 1.38795 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99630 * 180.27659 * 7 2 1 9 9 S 1.76199 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47042 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99945 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99776 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99565 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.85104 * 25.33641 * 14 13 11 16 16 C 1.53782 * 113.61009 * 156.52420 * 14 13 11 17 17 C 1.53786 * 87.08006 * 139.98138 * 16 14 13 18 18 H 1.09002 * 113.61213 * 89.19700 * 17 16 14 19 19 N 1.46899 * 113.61768 * 220.01818 * 17 16 14 20 20 C 1.46901 * 110.99935 * 205.00033 * 19 17 16 21 21 C 1.53002 * 109.46978 * 180.02562 * 20 19 17 22 22 C 1.50692 * 109.47060 * 179.97438 * 21 20 19 23 23 C 1.38236 * 120.00291 * 269.72494 * 22 21 20 24 24 C 1.38232 * 120.00069 * 179.81121 * 23 22 21 25 25 C 1.38234 * 120.00086 * 0.42241 * 24 23 22 26 26 C 1.38229 * 120.00106 * 359.80915 * 25 24 23 27 27 C 1.38237 * 119.99858 * 89.99911 * 22 21 20 28 28 C 1.53778 * 113.61383 * 254.13155 * 14 13 11 29 29 H 0.96991 * 120.00676 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47385 * 299.99958 * 10 9 7 31 31 H 1.09005 * 109.47046 * 60.00120 * 10 9 7 32 32 H 0.96993 * 120.00370 * 359.97438 * 13 11 10 33 33 H 1.09004 * 113.62053 * 254.52658 * 16 14 13 34 34 H 1.09000 * 113.61695 * 25.44013 * 16 14 13 35 35 H 1.00905 * 110.99696 * 81.04577 * 19 17 16 36 36 H 1.09003 * 109.47061 * 300.00062 * 20 19 17 37 37 H 1.08997 * 109.47271 * 60.00383 * 20 19 17 38 38 H 1.09004 * 109.47066 * 300.00390 * 21 20 19 39 39 H 1.09005 * 109.47273 * 59.99460 * 21 20 19 40 40 H 1.08003 * 119.99692 * 359.97438 * 23 22 21 41 41 H 1.08004 * 119.99635 * 180.20516 * 24 23 22 42 42 H 1.08000 * 119.99867 * 179.79485 * 25 24 23 43 43 H 1.07998 * 120.00487 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00384 * 359.97438 * 27 22 21 45 45 H 1.08997 * 113.61614 * 334.57138 * 28 14 13 46 46 H 1.09000 * 113.61109 * 105.47779 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 0.0040 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3026 -0.0012 12 8 0.7915 -5.5023 -0.0011 13 7 2.8446 -6.3429 -0.0008 14 6 2.3309 -7.7150 -0.0008 15 1 1.3324 -7.7931 -0.4310 16 6 3.3256 -8.7450 -0.5617 17 6 2.8604 -9.6882 0.5604 18 1 2.0071 -10.3077 0.2842 19 7 3.9514 -10.4594 1.1711 20 6 3.4474 -11.7048 1.7651 21 6 4.6098 -12.4785 2.3904 22 6 4.0927 -13.7558 3.0003 23 6 3.6810 -13.7745 4.3198 24 6 3.2030 -14.9452 4.8782 25 6 3.1449 -16.0993 4.1197 26 6 3.5611 -16.0819 2.8016 27 6 4.0354 -14.9102 2.2420 28 6 2.4752 -8.4268 1.3546 29 1 -0.4851 0.8399 0.0004 30 1 3.1247 -3.7312 -0.8905 31 1 3.1247 -3.7311 0.8895 32 1 3.8013 -6.1833 -0.0004 33 1 3.0720 -9.0975 -1.5615 34 1 4.3680 -8.4397 -0.4711 35 1 4.4460 -9.9066 1.8552 36 1 2.7127 -11.4688 2.5350 37 1 2.9799 -12.3134 0.9911 38 1 5.3449 -12.7144 1.6208 39 1 5.0771 -11.8697 3.1644 40 1 3.7304 -12.8737 4.9137 41 1 2.8783 -14.9589 5.9082 42 1 2.7745 -17.0148 4.5569 43 1 3.5161 -16.9837 2.2091 44 1 4.3608 -14.8966 1.2123 45 1 3.2847 -8.0342 1.9700 46 1 1.5361 -8.5227 1.8996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713186453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:06 Heat of formation + Delta-G solvation = -24.574640 kcal Electronic energy + Delta-G solvation = -24023.749096 eV Core-core repulsion = 20424.408507 eV Total energy + Delta-G solvation = -3599.340588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13812 -40.19425 -39.47444 -36.44006 -34.59519 -34.47822 -32.77270 -31.74810 -30.64419 -28.61511 -27.66421 -26.64143 -24.69885 -23.47757 -23.42032 -21.86812 -21.68619 -20.78503 -19.74761 -17.93343 -17.69232 -17.42312 -16.87616 -16.80658 -16.50036 -16.30794 -16.11326 -15.93982 -15.42335 -15.13326 -14.75386 -14.61431 -14.32727 -14.24917 -13.98027 -13.70519 -13.62867 -13.40734 -13.36717 -13.16894 -12.86560 -12.71409 -12.64813 -12.27810 -12.16577 -12.08842 -11.84430 -11.75618 -11.62209 -11.57214 -11.12651 -10.88270 -10.27919 -10.03811 -9.80771 -9.58756 -9.31306 -8.66867 -8.34266 -6.12773 0.45815 0.51563 1.27469 1.44248 1.47404 1.57257 1.60634 2.26933 2.32037 2.86613 2.99799 3.19337 3.33143 3.54909 3.69162 3.88826 3.93001 3.96956 4.01284 4.07438 4.19029 4.25846 4.31271 4.32197 4.39044 4.50871 4.56286 4.65660 4.67043 4.71216 4.78068 4.81598 4.96063 5.02431 5.05906 5.09607 5.18004 5.20873 5.26337 5.41579 5.58876 5.60334 5.65122 5.74964 6.07143 6.14901 6.19707 6.45898 6.55030 7.06811 7.27102 8.74752 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.033953 B = 0.001416 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.479327 B =19774.163075 C =19917.210097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.700 5.700 14 C 0.112 3.888 15 H 0.089 0.911 16 C -0.116 4.116 17 C 0.080 3.920 18 H 0.099 0.901 19 N -0.674 5.674 20 C 0.069 3.931 21 C -0.072 4.072 22 C -0.090 4.090 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.175 4.175 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.417 0.583 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.349 0.651 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.097 0.903 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.976 -31.865 5.919 35.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.353 5.353 14 C 0.006 3.994 15 H 0.107 0.893 16 C -0.155 4.155 17 C -0.031 4.031 18 H 0.117 0.883 19 N -0.304 5.304 20 C -0.060 4.060 21 C -0.109 4.109 22 C -0.091 4.091 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.215 4.215 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.254 0.746 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.169 0.831 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.150 0.850 45 H 0.115 0.885 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.047 -32.430 5.325 35.002 hybrid contribution 1.128 1.721 0.874 2.236 sum 13.175 -30.709 6.199 33.986 Atomic orbital electron populations 1.70177 1.08003 1.28682 1.47947 1.26126 0.95944 1.03313 0.93673 0.85007 0.77809 0.75675 0.79518 1.18614 1.20399 1.18647 1.23184 0.95367 0.92018 1.59018 0.89879 1.85582 1.10690 0.99290 1.97062 1.23387 1.03502 0.94446 1.06785 1.20121 0.86334 0.86808 0.74810 1.90680 1.17549 1.86118 1.50338 1.45726 1.10033 1.04672 1.74859 1.22424 0.99288 0.79562 0.98085 0.89272 1.23377 0.99680 0.93342 0.99093 1.22721 0.93600 0.91579 0.95201 0.88272 1.60439 1.25456 1.06886 1.37608 1.21904 0.95856 0.90918 0.97317 1.20506 0.97534 0.92674 1.00236 1.20006 0.99218 0.95649 0.94197 1.21306 0.99628 0.98793 0.95235 1.21437 0.99539 0.93085 1.00786 1.21458 1.00240 0.98994 0.94723 1.21456 0.98711 0.98711 0.95785 1.21328 1.00197 0.92660 1.00440 1.24213 1.02385 0.97694 0.97236 0.91995 0.87186 0.87227 0.74575 0.90101 0.87678 0.83086 0.95546 0.91251 0.89855 0.90452 0.85424 0.84797 0.84600 0.84523 0.85010 0.88492 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.55 -31.38 9.50 67.95 0.65 -30.74 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 11 C 0.53 19.67 7.85 87.66 0.69 20.36 16 12 O -0.57 -26.60 15.48 -3.01 -0.05 -26.65 16 13 N -0.70 -17.25 5.36 -440.04 -2.36 -19.61 16 14 C 0.11 2.44 4.21 45.52 0.19 2.63 16 15 H 0.09 2.44 7.50 -2.39 -0.02 2.42 16 16 C -0.12 -1.70 7.63 31.12 0.24 -1.46 16 17 C 0.08 1.14 4.18 45.50 0.19 1.33 16 18 H 0.10 1.46 7.87 -2.39 -0.02 1.44 16 19 N -0.67 -8.10 6.62 -488.52 -3.23 -11.33 16 20 C 0.07 0.83 5.51 86.30 0.48 1.31 16 21 C -0.07 -0.76 5.61 29.85 0.17 -0.59 16 22 C -0.09 -1.16 5.13 -19.87 -0.10 -1.27 16 23 C -0.13 -1.72 9.70 22.27 0.22 -1.51 16 24 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 25 C -0.14 -1.59 10.05 22.27 0.22 -1.37 16 26 C -0.13 -1.51 10.05 22.27 0.22 -1.29 16 27 C -0.13 -1.61 9.70 22.27 0.22 -1.39 16 28 C -0.17 -3.14 7.51 31.18 0.23 -2.91 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 30 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 31 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 32 H 0.42 7.28 8.71 -92.71 -0.81 6.47 16 33 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.10 1.28 8.11 -2.39 -0.02 1.26 16 35 H 0.35 3.61 8.20 -89.69 -0.74 2.88 16 36 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 38 H 0.08 0.87 8.09 -2.38 -0.02 0.85 16 39 H 0.08 0.72 8.08 -2.38 -0.02 0.70 16 40 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 41 H 0.13 1.18 8.06 -2.91 -0.02 1.15 16 42 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 43 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 44 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.10 1.55 7.83 -2.39 -0.02 1.53 16 46 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -76.66 400.09 -0.32 -76.98 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.56 Total: 22.46 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 4.74 Total: -21.71 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -5.31 Total: -86.89 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.05 Total: -26.65 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -76.66 -0.32 -76.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713186453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.404 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds