Wall clock time and date at job start Tue Mar 31 2020 18:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48503 * 109.47199 * 270.00112 * 3 2 1 5 5 H 1.48499 * 109.47171 * 30.00545 * 3 2 1 6 6 H 1.48499 * 109.46947 * 150.00545 * 3 2 1 7 7 C 1.38806 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99717 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00137 * 179.97438 * 7 2 1 10 10 C 1.80998 * 99.99965 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47244 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99814 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00340 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99821 * 180.02562 * 13 11 10 15 15 H 1.08993 * 110.28246 * 327.08883 * 14 13 11 16 16 C 1.54591 * 110.39246 * 89.24118 * 14 13 11 17 17 C 1.54933 * 102.92615 * 140.91114 * 16 14 13 18 18 N 1.48534 * 103.22918 * 322.58639 * 17 16 14 19 19 C 1.46900 * 111.00336 * 159.72037 * 18 17 16 20 20 C 1.52993 * 109.47001 * 52.60323 * 19 18 17 21 21 C 1.50707 * 109.46900 * 180.02562 * 20 19 18 22 22 C 1.38233 * 119.99854 * 269.72589 * 21 20 19 23 23 C 1.38233 * 119.99865 * 179.76471 * 22 21 20 24 24 C 1.38230 * 119.99919 * 0.48676 * 23 22 21 25 25 C 1.38232 * 120.00161 * 359.78721 * 24 23 22 26 26 C 1.38228 * 120.00170 * 89.99760 * 21 20 19 27 27 C 1.47906 * 105.81681 * 39.20123 * 18 17 16 28 28 H 0.96996 * 119.99415 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46986 * 59.99992 * 10 9 7 30 30 H 1.09003 * 109.47060 * 300.00233 * 10 9 7 31 31 H 0.96995 * 119.99600 * 0.02562 * 13 11 10 32 32 H 1.09008 * 110.72317 * 259.27219 * 16 14 13 33 33 H 1.09006 * 110.72857 * 22.37446 * 16 14 13 34 34 H 1.09004 * 110.67035 * 204.14644 * 17 16 14 35 35 H 1.09002 * 110.66721 * 81.02111 * 17 16 14 36 36 H 1.08996 * 109.46735 * 172.60414 * 19 18 17 37 37 H 1.09001 * 109.46927 * 292.60299 * 19 18 17 38 38 H 1.09006 * 109.47346 * 299.99689 * 20 19 18 39 39 H 1.09001 * 109.47299 * 60.00204 * 20 19 18 40 40 H 1.08007 * 120.00230 * 359.97438 * 22 21 20 41 41 H 1.08003 * 119.99546 * 180.25104 * 23 22 21 42 42 H 1.08005 * 119.99776 * 179.77079 * 24 23 22 43 43 H 1.08002 * 120.00226 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00344 * 0.02562 * 26 21 20 45 45 H 1.09003 * 109.91125 * 94.02808 * 27 18 17 46 46 H 1.08997 * 109.91647 * 215.12246 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0021 12 8 6.3440 -2.2964 -0.0025 13 7 6.0457 -4.4948 -0.0016 14 6 7.4906 -4.7358 -0.0021 15 1 8.0042 -3.9517 -0.5583 16 6 8.0258 -4.8046 1.4465 17 6 9.0718 -5.9455 1.3758 18 7 8.4475 -6.9218 0.4467 19 6 9.4556 -7.8266 -0.1217 20 6 10.2701 -8.4575 1.0094 21 6 11.3047 -9.3853 0.4263 22 6 11.0006 -10.7180 0.2207 23 6 11.9481 -11.5678 -0.3187 24 6 13.2029 -11.0872 -0.6431 25 6 13.5088 -9.7558 -0.4323 26 6 12.5597 -8.9048 0.1022 27 6 7.8022 -6.1152 -0.6119 28 1 -0.4849 0.8401 0.0004 29 1 3.6433 -3.4318 -0.8906 30 1 3.6440 -3.4314 0.8893 31 1 5.4290 -5.2435 -0.0009 32 1 8.4994 -3.8640 1.7279 33 1 7.2248 -5.0547 2.1423 34 1 9.2217 -6.3916 2.3590 35 1 10.0149 -5.5781 0.9711 36 1 8.9590 -8.6108 -0.6931 37 1 10.1199 -7.2641 -0.7778 38 1 10.7667 -7.6733 1.5808 39 1 9.6058 -9.0200 1.6655 40 1 10.0217 -11.0945 0.4784 41 1 11.7091 -12.6082 -0.4830 42 1 13.9443 -11.7521 -1.0611 43 1 14.4894 -9.3804 -0.6854 44 1 12.7989 -7.8646 0.2672 45 1 8.4800 -6.0027 -1.4581 46 1 6.8803 -6.5978 -0.9364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713816841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:41 Heat of formation + Delta-G solvation = -12.565910 kcal Electronic energy + Delta-G solvation = -24646.218208 eV Core-core repulsion = 21047.398358 eV Total energy + Delta-G solvation = -3598.819851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.17778 -39.60266 -38.44862 -35.11260 -33.37746 -32.43388 -31.30038 -31.17065 -29.64342 -28.75904 -27.02007 -25.59597 -23.95839 -22.98950 -21.90823 -21.23588 -20.67999 -20.40336 -17.88450 -17.23095 -16.73557 -16.57525 -15.97434 -15.83713 -15.44257 -15.13823 -14.97374 -14.79480 -14.58653 -13.95366 -13.80466 -13.62068 -13.51291 -13.37127 -13.01294 -12.87099 -12.78551 -12.65969 -12.24887 -11.86126 -11.72350 -11.67330 -11.51701 -11.37735 -11.25938 -11.18675 -11.01668 -10.98807 -10.59342 -9.85480 -9.51943 -9.33821 -9.12128 -9.02684 -8.97625 -8.77199 -8.49797 -6.91381 -6.28548 -4.00214 0.92727 0.98577 2.76443 2.95813 3.28584 3.33156 3.35530 3.50648 3.59282 3.68452 4.24522 4.33463 4.40197 4.47831 4.48129 4.60708 4.71965 4.72515 4.74836 4.83829 4.96122 4.97608 5.09796 5.10573 5.12385 5.13913 5.18977 5.29428 5.36063 5.44415 5.56194 5.57903 5.62338 5.66241 5.70682 5.77685 5.85590 5.97543 6.03091 6.05092 6.10724 6.22134 6.47577 6.59082 6.59984 6.64715 7.62459 7.94569 8.42246 8.49308 9.17679 10.80708 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.045047 B = 0.001598 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.419508 B =17514.625841 C =17797.887917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.727 5.727 14 C 0.139 3.861 15 H 0.095 0.905 16 C -0.135 4.135 17 C 0.034 3.966 18 N -0.515 5.515 19 C 0.053 3.947 20 C -0.082 4.082 21 C -0.080 4.080 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.117 4.117 27 C 0.030 3.970 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.401 0.599 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.055 0.945 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.418 -23.389 0.409 34.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.395 6.395 13 N -0.382 5.382 14 C 0.033 3.967 15 H 0.113 0.887 16 C -0.175 4.175 17 C -0.094 4.094 18 N -0.239 5.239 19 C -0.075 4.075 20 C -0.119 4.119 21 C -0.081 4.081 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.098 4.098 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.236 0.764 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.073 0.927 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 26.144 -22.047 0.661 34.205 hybrid contribution -0.463 -0.296 -0.533 0.765 sum 25.681 -22.343 0.127 34.040 Atomic orbital electron populations 1.69940 1.05915 1.27747 1.48088 1.24712 0.94442 0.98943 0.93178 0.86735 0.81897 0.83298 0.79916 1.19228 1.19939 1.15940 1.22324 0.88288 0.97546 1.58766 0.89382 1.84774 1.09271 1.00121 1.97431 1.23280 0.94012 1.04332 1.05851 1.20306 0.90585 0.82355 0.74960 1.90692 1.58766 1.42240 1.47811 1.46050 1.06717 1.08119 1.77282 1.21695 0.82144 0.96495 0.96412 0.88718 1.22961 0.98930 0.98394 0.97178 1.23262 0.96136 0.92270 0.97733 1.64851 1.27532 1.16822 1.14737 1.22286 0.92791 0.96450 0.95962 1.20671 0.95704 0.97939 0.97601 1.19868 0.94832 0.94401 0.98966 1.21108 0.99563 0.93151 0.99500 1.21176 0.93728 0.99787 0.99005 1.21169 0.96936 0.95792 1.00505 1.21163 0.99385 0.93866 0.99287 1.21082 0.93238 0.99754 0.99465 1.23148 1.00496 0.92610 0.93585 0.91952 0.88496 0.88408 0.76370 0.90316 0.90003 0.89627 0.93465 0.90357 0.94382 0.90725 0.89921 0.85915 0.86072 0.86199 0.86118 0.86195 0.92653 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.80 27.74 -169.99 -4.71 17.09 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 10 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 11 C 0.53 9.27 7.85 -10.99 -0.09 9.19 16 12 O -0.52 -11.03 15.51 5.56 0.09 -10.94 16 13 N -0.73 -9.10 5.06 -52.50 -0.27 -9.37 16 14 C 0.14 1.54 3.34 -66.58 -0.22 1.32 16 15 H 0.09 1.21 7.56 -51.93 -0.39 0.82 16 16 C -0.14 -1.40 6.78 -24.88 -0.17 -1.56 16 17 C 0.03 0.28 5.10 -1.90 -0.01 0.27 16 18 N -0.52 -4.29 5.40 -230.45 -1.24 -5.53 16 19 C 0.05 0.38 5.01 -3.83 -0.02 0.36 16 20 C -0.08 -0.53 5.00 -27.88 -0.14 -0.66 16 21 C -0.08 -0.56 5.13 -104.62 -0.54 -1.10 16 22 C -0.12 -0.78 9.70 -39.58 -0.38 -1.16 16 23 C -0.12 -0.75 10.05 -39.59 -0.40 -1.15 16 24 C -0.13 -0.79 10.05 -39.59 -0.40 -1.18 16 25 C -0.12 -0.77 10.05 -39.59 -0.40 -1.17 16 26 C -0.12 -0.81 9.70 -39.59 -0.38 -1.19 16 27 C 0.03 0.26 6.46 -2.75 -0.02 0.25 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 30 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 31 H 0.40 4.02 8.36 -40.82 -0.34 3.68 16 32 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 34 H 0.09 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.05 0.36 8.00 -51.93 -0.42 -0.05 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.28 7.81 -51.93 -0.41 -0.12 16 38 H 0.07 0.46 6.74 -51.93 -0.35 0.11 16 39 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.12 0.55 8.06 -52.48 -0.42 0.12 16 42 H 0.12 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 45 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 46 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -33.72 389.79 -11.52 -45.24 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.31 Total: 1.03 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.72 Total: -11.99 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: -0.73 Total: -40.71 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.72 -11.52 -45.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713816841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.675 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds