Wall clock time and date at job start Tue Mar 31 2020 18:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48503 * 109.47199 * 270.00112 * 3 2 1 5 5 H 1.48499 * 109.47171 * 30.00545 * 3 2 1 6 6 H 1.48499 * 109.46947 * 150.00545 * 3 2 1 7 7 C 1.38806 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99717 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00137 * 179.97438 * 7 2 1 10 10 C 1.80998 * 99.99965 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47244 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99814 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00340 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99821 * 180.02562 * 13 11 10 15 15 H 1.08993 * 110.28246 * 327.08883 * 14 13 11 16 16 C 1.54591 * 110.39246 * 89.24118 * 14 13 11 17 17 C 1.54933 * 102.92615 * 140.91114 * 16 14 13 18 18 N 1.48534 * 103.22918 * 322.58639 * 17 16 14 19 19 C 1.46900 * 111.00336 * 159.72037 * 18 17 16 20 20 C 1.52993 * 109.47001 * 52.60323 * 19 18 17 21 21 C 1.50707 * 109.46900 * 180.02562 * 20 19 18 22 22 C 1.38233 * 119.99854 * 269.72589 * 21 20 19 23 23 C 1.38233 * 119.99865 * 179.76471 * 22 21 20 24 24 C 1.38230 * 119.99919 * 0.48676 * 23 22 21 25 25 C 1.38232 * 120.00161 * 359.78721 * 24 23 22 26 26 C 1.38228 * 120.00170 * 89.99760 * 21 20 19 27 27 C 1.47906 * 105.81681 * 39.20123 * 18 17 16 28 28 H 0.96996 * 119.99415 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46986 * 59.99992 * 10 9 7 30 30 H 1.09003 * 109.47060 * 300.00233 * 10 9 7 31 31 H 0.96995 * 119.99600 * 0.02562 * 13 11 10 32 32 H 1.09008 * 110.72317 * 259.27219 * 16 14 13 33 33 H 1.09006 * 110.72857 * 22.37446 * 16 14 13 34 34 H 1.09004 * 110.67035 * 204.14644 * 17 16 14 35 35 H 1.09002 * 110.66721 * 81.02111 * 17 16 14 36 36 H 1.08996 * 109.46735 * 172.60414 * 19 18 17 37 37 H 1.09001 * 109.46927 * 292.60299 * 19 18 17 38 38 H 1.09006 * 109.47346 * 299.99689 * 20 19 18 39 39 H 1.09001 * 109.47299 * 60.00204 * 20 19 18 40 40 H 1.08007 * 120.00230 * 359.97438 * 22 21 20 41 41 H 1.08003 * 119.99546 * 180.25104 * 23 22 21 42 42 H 1.08005 * 119.99776 * 179.77079 * 24 23 22 43 43 H 1.08002 * 120.00226 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00344 * 0.02562 * 26 21 20 45 45 H 1.09003 * 109.91125 * 94.02808 * 27 18 17 46 46 H 1.08997 * 109.91647 * 215.12246 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0021 12 8 6.3440 -2.2964 -0.0025 13 7 6.0457 -4.4948 -0.0016 14 6 7.4906 -4.7358 -0.0021 15 1 8.0042 -3.9517 -0.5583 16 6 8.0258 -4.8046 1.4465 17 6 9.0718 -5.9455 1.3758 18 7 8.4475 -6.9218 0.4467 19 6 9.4556 -7.8266 -0.1217 20 6 10.2701 -8.4575 1.0094 21 6 11.3047 -9.3853 0.4263 22 6 11.0006 -10.7180 0.2207 23 6 11.9481 -11.5678 -0.3187 24 6 13.2029 -11.0872 -0.6431 25 6 13.5088 -9.7558 -0.4323 26 6 12.5597 -8.9048 0.1022 27 6 7.8022 -6.1152 -0.6119 28 1 -0.4849 0.8401 0.0004 29 1 3.6433 -3.4318 -0.8906 30 1 3.6440 -3.4314 0.8893 31 1 5.4290 -5.2435 -0.0009 32 1 8.4994 -3.8640 1.7279 33 1 7.2248 -5.0547 2.1423 34 1 9.2217 -6.3916 2.3590 35 1 10.0149 -5.5781 0.9711 36 1 8.9590 -8.6108 -0.6931 37 1 10.1199 -7.2641 -0.7778 38 1 10.7667 -7.6733 1.5808 39 1 9.6058 -9.0200 1.6655 40 1 10.0217 -11.0945 0.4784 41 1 11.7091 -12.6082 -0.4830 42 1 13.9443 -11.7521 -1.0611 43 1 14.4894 -9.3804 -0.6854 44 1 12.7989 -7.8646 0.2672 45 1 8.4800 -6.0027 -1.4581 46 1 6.8803 -6.5978 -0.9364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713816841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:40 Heat of formation + Delta-G solvation = -34.266964 kcal Electronic energy + Delta-G solvation = -24647.159237 eV Core-core repulsion = 21047.398358 eV Total energy + Delta-G solvation = -3599.760879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.12641 -40.26042 -39.41632 -36.01360 -34.67074 -34.21409 -32.05278 -31.74565 -30.78744 -29.55027 -27.97642 -27.68268 -24.56369 -23.44228 -22.63037 -22.14073 -21.62694 -21.20599 -19.89154 -18.06163 -17.71707 -17.53471 -17.09158 -16.78376 -16.56381 -16.34009 -16.10670 -15.81516 -15.42460 -15.21161 -14.95456 -14.72482 -14.26116 -14.20568 -14.17190 -13.81283 -13.65924 -13.43372 -13.34558 -13.24414 -13.01139 -12.76753 -12.64096 -12.37292 -12.36354 -12.07276 -11.93871 -11.86229 -11.76496 -11.65835 -11.16849 -10.98879 -10.53448 -10.14440 -9.80332 -9.58663 -9.43556 -8.99156 -8.51287 -6.22035 0.45838 0.52079 0.99278 1.31560 1.46952 1.55782 1.56171 2.21339 2.26355 2.71762 2.83173 2.87055 2.99864 3.48030 3.71742 3.87820 3.93884 3.98709 4.10334 4.17656 4.23398 4.24708 4.26483 4.29600 4.32580 4.38529 4.48027 4.59895 4.66340 4.66970 4.69924 4.77706 4.88522 4.96480 5.01499 5.08190 5.14165 5.20827 5.23146 5.49935 5.59893 5.65616 5.70984 5.74285 5.81456 6.00514 6.11770 6.15581 6.47288 6.93954 7.19502 8.61139 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.045047 B = 0.001598 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.419508 B =17514.625841 C =17797.887917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.175 6.175 10 C -0.112 4.112 11 C 0.538 3.462 12 O -0.562 6.562 13 N -0.703 5.703 14 C 0.135 3.865 15 H 0.078 0.922 16 C -0.134 4.134 17 C 0.041 3.959 18 N -0.518 5.518 19 C 0.058 3.942 20 C -0.074 4.074 21 C -0.090 4.090 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.130 4.130 27 C 0.037 3.963 28 H 0.277 0.723 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.417 0.583 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.127 0.873 45 H 0.063 0.937 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.051 -24.726 0.360 36.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.051 5.949 10 C -0.263 4.263 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.357 5.357 14 C 0.030 3.970 15 H 0.096 0.904 16 C -0.173 4.173 17 C -0.086 4.086 18 N -0.243 5.243 19 C -0.070 4.070 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.153 4.153 25 C -0.147 4.147 26 C -0.148 4.148 27 C -0.091 4.091 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.255 0.745 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.145 0.855 45 H 0.081 0.919 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 27.775 -23.444 0.613 36.352 hybrid contribution -0.922 -0.075 -0.527 1.065 sum 26.853 -23.519 0.087 35.697 Atomic orbital electron populations 1.70018 1.07312 1.29009 1.49141 1.25560 0.95256 1.02230 0.92860 0.85866 0.80675 0.79611 0.80207 1.18702 1.18321 1.16089 1.22473 0.90310 0.96700 1.58286 0.91985 1.84690 1.06364 1.06214 1.97589 1.23273 0.95925 0.99587 1.07467 1.19948 0.89343 0.83400 0.74991 1.90684 1.59264 1.43813 1.50273 1.45837 1.07966 1.06841 1.75045 1.21821 0.80560 0.97484 0.97164 0.90424 1.22904 0.99349 0.98855 0.96239 1.23230 0.95573 0.91417 0.98427 1.64886 1.28065 1.16729 1.14602 1.22262 0.92500 0.96123 0.96155 1.20590 0.95455 0.97860 0.97233 1.19972 0.95064 0.94674 0.99327 1.21317 1.00190 0.93302 0.99701 1.21451 0.93777 1.00646 0.98759 1.21460 0.97397 0.96115 1.00355 1.21430 1.00059 0.94099 0.99158 1.21283 0.93450 1.00354 0.99739 1.23084 1.01211 0.91081 0.93724 0.91377 0.86830 0.86869 0.74531 0.91421 0.90527 0.88499 0.92779 0.90284 0.94505 0.90410 0.89965 0.85075 0.84552 0.84579 0.84728 0.85461 0.91907 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.88 13.97 21.65 0.30 -55.58 16 2 C 0.05 2.72 5.50 84.86 0.47 3.19 16 3 Si 0.91 45.03 27.74 68.60 1.90 46.93 16 4 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 7 C -0.53 -30.90 10.04 67.96 0.68 -30.21 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 9 S -0.18 -8.83 18.55 -56.49 -1.05 -9.88 16 10 C -0.11 -4.16 6.16 71.23 0.44 -3.72 16 11 C 0.54 18.12 7.85 87.66 0.69 18.81 16 12 O -0.56 -23.61 15.51 -3.04 -0.05 -23.66 16 13 N -0.70 -16.32 5.06 -438.40 -2.22 -18.54 16 14 C 0.14 2.80 3.34 45.87 0.15 2.95 16 15 H 0.08 1.93 7.56 -2.39 -0.02 1.92 16 16 C -0.13 -2.59 6.78 31.80 0.22 -2.37 16 17 C 0.04 0.59 5.10 86.65 0.44 1.03 16 18 N -0.52 -7.43 5.40 -883.02 -4.76 -12.19 16 19 C 0.06 0.70 5.01 86.30 0.43 1.14 16 20 C -0.07 -0.82 5.00 29.85 0.15 -0.67 16 21 C -0.09 -1.13 5.13 -19.87 -0.10 -1.23 16 22 C -0.13 -1.55 9.70 22.27 0.22 -1.33 16 23 C -0.13 -1.45 10.05 22.27 0.22 -1.23 16 24 C -0.14 -1.50 10.05 22.27 0.22 -1.27 16 25 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 26 C -0.13 -1.63 9.70 22.27 0.22 -1.41 16 27 C 0.04 0.57 6.46 86.45 0.56 1.13 16 28 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 30 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 31 H 0.42 7.25 8.36 -92.71 -0.77 6.48 16 32 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.08 1.57 8.06 -2.38 -0.02 1.55 16 34 H 0.10 1.20 7.66 -2.38 -0.02 1.18 16 35 H 0.05 0.72 8.00 -2.39 -0.02 0.70 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.04 0.47 7.81 -2.39 -0.02 0.46 16 38 H 0.08 0.81 6.74 -2.38 -0.02 0.79 16 39 H 0.08 0.92 8.08 -2.39 -0.02 0.91 16 40 H 0.13 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 42 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.13 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.06 0.90 7.57 -2.39 -0.02 0.88 16 46 H 0.10 1.33 7.66 -2.39 -0.02 1.31 16 Total: -1.00 -72.66 389.79 -0.49 -73.15 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.16 Total: 16.25 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 5.23 Total: -16.49 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -6.68 Total: -86.30 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.93 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -72.66 -0.49 -73.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713816841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.881 kcal (2) G-P(sol) polarization free energy of solvation -72.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds