Wall clock time and date at job start Tue Mar 31 2020 18:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86790 * 120.00114 * 2 1 4 4 H 1.48504 * 109.47325 * 270.00256 * 3 2 1 5 5 H 1.48501 * 109.47195 * 30.00155 * 3 2 1 6 6 H 1.48505 * 109.47104 * 150.00446 * 3 2 1 7 7 C 1.38797 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99880 * 179.97438 * 7 2 1 9 9 S 1.76207 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99811 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99678 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00206 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00263 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47227 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.47270 * 294.99992 * 15 14 13 17 17 N 1.46895 * 109.46837 * 55.00281 * 15 14 13 18 18 C 1.46906 * 110.99789 * 204.99698 * 17 15 14 19 19 C 1.53002 * 109.47053 * 179.97438 * 18 17 15 20 20 C 1.52996 * 117.49850 * 243.62094 * 19 18 17 21 21 C 1.52995 * 60.00244 * 252.51247 * 20 19 18 22 22 C 1.50697 * 109.46804 * 175.00046 * 15 14 13 23 23 C 1.38236 * 120.00050 * 279.72490 * 22 15 14 24 24 C 1.38241 * 120.00060 * 179.81416 * 23 22 15 25 25 C 1.38235 * 119.99623 * 0.39371 * 24 23 22 26 26 C 1.38229 * 120.00294 * 359.86517 * 25 24 23 27 27 C 1.38236 * 119.99883 * 100.00390 * 22 15 14 28 28 H 0.96999 * 119.99664 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47269 * 60.00352 * 10 9 7 30 30 H 1.08995 * 109.47643 * 299.99530 * 10 9 7 31 31 H 0.96996 * 120.00066 * 0.02562 * 13 11 10 32 32 H 1.09005 * 109.46643 * 60.00104 * 14 13 11 33 33 H 1.08997 * 109.47215 * 300.00262 * 14 13 11 34 34 H 1.00899 * 111.00672 * 81.04642 * 17 15 14 35 35 H 1.08992 * 109.47459 * 299.99826 * 18 17 15 36 36 H 1.09004 * 109.47040 * 59.99976 * 18 17 15 37 37 H 1.09002 * 115.55184 * 29.33261 * 19 18 17 38 38 H 1.08996 * 117.50168 * 0.02562 * 20 19 18 39 39 H 1.09011 * 117.49539 * 145.02089 * 20 19 18 40 40 H 1.08998 * 117.50225 * 252.51680 * 21 20 19 41 41 H 1.08997 * 117.49598 * 107.48717 * 21 20 19 42 42 H 1.08006 * 120.00042 * 0.02562 * 23 22 15 43 43 H 1.07994 * 120.00131 * 180.23740 * 24 23 22 44 44 H 1.08000 * 119.99975 * 179.83127 * 25 24 23 45 45 H 1.08006 * 120.00124 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.00108 * 359.97438 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9872 -5.3028 -0.0036 12 8 0.7909 -5.5023 -0.0038 13 7 2.8439 -6.3432 -0.0039 14 6 2.3301 -7.7152 -0.0050 15 6 3.5022 -8.6987 -0.0058 16 1 4.0597 -8.5988 -0.9371 17 7 4.3877 -8.4058 1.1290 18 6 5.7553 -8.8720 0.8635 19 6 6.6463 -8.5496 2.0648 20 6 7.8011 -7.5703 1.8452 21 6 8.0878 -9.0614 2.0328 22 6 2.9771 -10.1059 0.1168 23 6 2.6130 -10.6024 1.3545 24 6 2.1277 -11.8920 1.4664 25 6 2.0141 -12.6877 0.3418 26 6 2.3832 -12.1930 -0.8951 27 6 2.8648 -10.9021 -1.0076 28 1 -0.4849 0.8401 0.0004 29 1 3.1243 -3.7322 0.8872 30 1 3.1243 -3.7307 -0.8928 31 1 3.8006 -6.1836 -0.0033 32 1 1.7219 -7.8746 -0.8955 33 1 1.7211 -7.8759 0.8845 34 1 4.0279 -8.8078 1.9817 35 1 5.7461 -9.9490 0.6963 36 1 6.1447 -8.3701 -0.0223 37 1 6.1422 -8.5253 3.0310 38 1 7.9259 -7.1554 0.8451 39 1 8.0568 -6.9013 2.6671 40 1 8.5321 -9.3735 2.9779 41 1 8.4014 -9.6277 1.1559 42 1 2.7046 -9.9816 2.2336 43 1 1.8397 -12.2785 2.4328 44 1 1.6375 -13.6961 0.4296 45 1 2.2948 -12.8149 -1.7737 46 1 3.1531 -10.5156 -1.9739 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714837015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:24 Heat of formation + Delta-G solvation = 10.961601 kcal Electronic energy + Delta-G solvation = -25215.870156 eV Core-core repulsion = 21618.070534 eV Total energy + Delta-G solvation = -3597.799621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.19986 -38.86952 -38.07106 -36.33676 -33.69453 -32.37586 -31.67540 -31.19124 -29.77254 -27.78027 -25.55268 -25.27175 -23.53841 -22.80416 -22.63160 -21.13766 -20.58190 -20.14011 -17.80213 -17.51857 -16.50046 -16.15482 -16.06895 -15.65016 -15.38954 -15.04301 -14.94988 -14.75692 -14.53184 -14.03137 -13.89475 -13.72236 -13.49420 -13.33740 -13.02976 -12.87907 -12.54114 -12.45947 -11.94924 -11.82452 -11.60574 -11.56068 -11.46344 -11.22325 -11.02194 -10.96937 -10.71868 -10.62055 -10.39823 -9.76009 -9.32958 -9.27023 -9.07123 -9.01817 -8.81478 -8.66607 -8.15858 -6.43054 -6.16493 -3.86063 0.96415 1.05433 3.12479 3.24750 3.26155 3.31178 3.34487 3.41059 3.46234 3.76613 3.87378 4.25839 4.38632 4.47490 4.49973 4.62370 4.65165 4.74293 4.78634 4.84471 4.96242 5.05165 5.14698 5.18490 5.23762 5.25349 5.31393 5.34526 5.37992 5.61108 5.62853 5.64932 5.67642 5.72439 5.82176 5.91213 5.94397 6.00969 6.10740 6.13642 6.17580 6.25088 6.62935 6.64062 6.79300 7.01183 7.64857 7.94082 8.40677 8.78488 9.28807 10.90980 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.002446 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.469257 B =11445.548927 C =13344.909615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.151 4.151 11 C 0.530 3.470 12 O -0.524 6.524 13 N -0.724 5.724 14 C 0.141 3.859 15 C 0.116 3.884 16 H 0.093 0.907 17 N -0.674 5.674 18 C 0.090 3.910 19 C -0.149 4.149 20 C -0.172 4.172 21 C -0.183 4.183 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.108 4.108 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.403 0.597 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.345 0.655 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.798 -26.664 1.700 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.682 4.682 8 H 0.090 0.910 9 S 0.164 5.836 10 C -0.301 4.301 11 C 0.316 3.684 12 O -0.399 6.399 13 N -0.378 5.378 14 C 0.015 3.985 15 C 0.006 3.994 16 H 0.111 0.889 17 N -0.306 5.306 18 C -0.039 4.039 19 C -0.167 4.167 20 C -0.209 4.209 21 C -0.221 4.221 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.136 4.136 27 C -0.127 4.127 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.238 0.762 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.166 0.834 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.770 -26.225 1.512 28.785 hybrid contribution 2.288 0.290 0.154 2.311 sum 14.058 -25.935 1.665 29.547 Atomic orbital electron populations 1.70025 1.05936 1.27351 1.47065 1.24990 0.95022 0.98996 0.94652 0.86177 0.79424 0.81642 0.78303 1.20317 1.20799 1.19705 1.22878 0.94907 0.91723 1.58651 0.90969 1.85380 1.05192 0.96290 1.96697 1.23503 1.06318 0.95481 1.04831 1.20279 0.86505 0.86312 0.75305 1.90696 1.15472 1.85674 1.48080 1.45768 1.10257 1.04688 1.77134 1.21155 0.94109 0.80869 1.02317 1.20816 0.93759 0.89292 0.95541 0.88927 1.60641 1.01666 1.63380 1.04913 1.21561 0.87929 0.97681 0.96758 1.22206 0.89837 1.04844 0.99829 1.23005 1.02414 0.92254 1.03199 1.22969 0.98456 0.97557 1.03118 1.20497 1.00394 0.96484 0.93881 1.20962 0.99162 0.95940 0.97109 1.21138 0.99280 0.94142 0.98791 1.21191 0.99928 0.99910 0.92843 1.21174 0.98965 0.95792 0.97676 1.21082 0.99450 0.94068 0.98091 0.92256 0.89254 0.89425 0.76180 0.91320 0.91678 0.83375 0.94668 0.90715 0.87635 0.88646 0.88793 0.88883 0.88970 0.85940 0.85938 0.86097 0.85983 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.28 7.85 -10.99 -0.09 10.19 16 12 O -0.52 -12.32 15.86 5.55 0.09 -12.23 16 13 N -0.72 -10.16 5.39 -60.29 -0.32 -10.49 16 14 C 0.14 1.71 5.35 -4.04 -0.02 1.69 16 15 C 0.12 1.01 2.38 -68.87 -0.16 0.84 16 16 H 0.09 0.75 7.66 -51.93 -0.40 0.35 16 17 N -0.67 -5.48 5.67 -107.95 -0.61 -6.09 16 18 C 0.09 0.65 5.76 -3.82 -0.02 0.63 16 19 C -0.15 -1.08 5.95 -90.62 -0.54 -1.62 16 20 C -0.17 -1.26 10.18 -26.74 -0.27 -1.54 16 21 C -0.18 -1.20 10.25 -26.73 -0.27 -1.48 16 22 C -0.11 -0.94 4.71 -104.63 -0.49 -1.43 16 23 C -0.11 -0.94 9.12 -39.58 -0.36 -1.30 16 24 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 26 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 27 C -0.11 -0.88 9.67 -39.58 -0.38 -1.26 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.40 4.82 8.14 -40.82 -0.33 4.48 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.35 2.71 6.33 -39.29 -0.25 2.46 16 35 H 0.04 0.26 8.00 -51.93 -0.42 -0.15 16 36 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 37 H 0.11 0.79 8.13 -51.93 -0.42 0.37 16 38 H 0.10 0.69 8.03 -51.93 -0.42 0.28 16 39 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.12 0.90 6.50 -52.48 -0.34 0.56 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 46 H 0.12 0.84 8.04 -52.49 -0.42 0.41 16 LS Contribution 400.00 15.07 6.03 6.03 Total: -1.00 -34.59 400.00 -11.88 -46.47 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.17 Total: 4.60 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -3.39 Total: -15.21 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.20 Total: -42.40 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.59 -11.88 -46.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714837015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.436 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds