Wall clock time and date at job start Tue Mar 31 2020 18:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86790 * 120.00114 * 2 1 4 4 H 1.48504 * 109.47325 * 270.00256 * 3 2 1 5 5 H 1.48501 * 109.47195 * 30.00155 * 3 2 1 6 6 H 1.48505 * 109.47104 * 150.00446 * 3 2 1 7 7 C 1.38797 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99880 * 179.97438 * 7 2 1 9 9 S 1.76207 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99811 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99678 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00206 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00263 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47227 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.47270 * 294.99992 * 15 14 13 17 17 N 1.46895 * 109.46837 * 55.00281 * 15 14 13 18 18 C 1.46906 * 110.99789 * 204.99698 * 17 15 14 19 19 C 1.53002 * 109.47053 * 179.97438 * 18 17 15 20 20 C 1.52996 * 117.49850 * 243.62094 * 19 18 17 21 21 C 1.52995 * 60.00244 * 252.51247 * 20 19 18 22 22 C 1.50697 * 109.46804 * 175.00046 * 15 14 13 23 23 C 1.38236 * 120.00050 * 279.72490 * 22 15 14 24 24 C 1.38241 * 120.00060 * 179.81416 * 23 22 15 25 25 C 1.38235 * 119.99623 * 0.39371 * 24 23 22 26 26 C 1.38229 * 120.00294 * 359.86517 * 25 24 23 27 27 C 1.38236 * 119.99883 * 100.00390 * 22 15 14 28 28 H 0.96999 * 119.99664 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47269 * 60.00352 * 10 9 7 30 30 H 1.08995 * 109.47643 * 299.99530 * 10 9 7 31 31 H 0.96996 * 120.00066 * 0.02562 * 13 11 10 32 32 H 1.09005 * 109.46643 * 60.00104 * 14 13 11 33 33 H 1.08997 * 109.47215 * 300.00262 * 14 13 11 34 34 H 1.00899 * 111.00672 * 81.04642 * 17 15 14 35 35 H 1.08992 * 109.47459 * 299.99826 * 18 17 15 36 36 H 1.09004 * 109.47040 * 59.99976 * 18 17 15 37 37 H 1.09002 * 115.55184 * 29.33261 * 19 18 17 38 38 H 1.08996 * 117.50168 * 0.02562 * 20 19 18 39 39 H 1.09011 * 117.49539 * 145.02089 * 20 19 18 40 40 H 1.08998 * 117.50225 * 252.51680 * 21 20 19 41 41 H 1.08997 * 117.49598 * 107.48717 * 21 20 19 42 42 H 1.08006 * 120.00042 * 0.02562 * 23 22 15 43 43 H 1.07994 * 120.00131 * 180.23740 * 24 23 22 44 44 H 1.08000 * 119.99975 * 179.83127 * 25 24 23 45 45 H 1.08006 * 120.00124 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.00108 * 359.97438 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9872 -5.3028 -0.0036 12 8 0.7909 -5.5023 -0.0038 13 7 2.8439 -6.3432 -0.0039 14 6 2.3301 -7.7152 -0.0050 15 6 3.5022 -8.6987 -0.0058 16 1 4.0597 -8.5988 -0.9371 17 7 4.3877 -8.4058 1.1290 18 6 5.7553 -8.8720 0.8635 19 6 6.6463 -8.5496 2.0648 20 6 7.8011 -7.5703 1.8452 21 6 8.0878 -9.0614 2.0328 22 6 2.9771 -10.1059 0.1168 23 6 2.6130 -10.6024 1.3545 24 6 2.1277 -11.8920 1.4664 25 6 2.0141 -12.6877 0.3418 26 6 2.3832 -12.1930 -0.8951 27 6 2.8648 -10.9021 -1.0076 28 1 -0.4849 0.8401 0.0004 29 1 3.1243 -3.7322 0.8872 30 1 3.1243 -3.7307 -0.8928 31 1 3.8006 -6.1836 -0.0033 32 1 1.7219 -7.8746 -0.8955 33 1 1.7211 -7.8759 0.8845 34 1 4.0279 -8.8078 1.9817 35 1 5.7461 -9.9490 0.6963 36 1 6.1447 -8.3701 -0.0223 37 1 6.1422 -8.5253 3.0310 38 1 7.9259 -7.1554 0.8451 39 1 8.0568 -6.9013 2.6671 40 1 8.5321 -9.3735 2.9779 41 1 8.4014 -9.6277 1.1559 42 1 2.7046 -9.9816 2.2336 43 1 1.8397 -12.2785 2.4328 44 1 1.6375 -13.6961 0.4296 45 1 2.2948 -12.8149 -1.7737 46 1 3.1531 -10.5156 -1.9739 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714837015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:23 Heat of formation + Delta-G solvation = -10.744408 kcal Electronic energy + Delta-G solvation = -25216.811399 eV Core-core repulsion = 21618.070534 eV Total energy + Delta-G solvation = -3598.740865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98767 -40.19840 -38.66393 -37.14356 -34.90564 -34.56226 -32.37027 -31.77110 -31.17063 -28.80234 -27.63240 -26.13776 -24.31170 -23.40000 -23.16356 -21.82758 -21.55876 -21.23648 -19.79088 -18.22749 -17.68839 -17.26565 -17.06490 -16.86193 -16.48852 -16.32225 -16.07184 -15.68781 -15.61955 -15.21460 -14.90125 -14.66276 -14.46052 -14.27772 -14.15944 -13.92542 -13.64686 -13.55035 -13.14276 -13.07886 -12.87044 -12.60369 -12.54249 -12.34984 -12.18154 -12.06941 -11.84192 -11.71097 -11.17730 -11.12534 -10.99769 -10.88523 -10.24844 -10.02536 -9.84859 -9.73176 -9.43710 -8.64154 -8.32770 -6.10472 0.36117 0.47357 1.29497 1.43622 1.49057 1.59888 1.68876 2.28508 2.36634 2.81112 2.86035 3.01132 3.15590 3.35705 3.69327 3.87493 3.91537 4.00919 4.07481 4.10848 4.15309 4.21778 4.22268 4.27916 4.34739 4.47572 4.55197 4.58164 4.61948 4.66627 4.76410 4.80886 4.83895 4.88389 5.04301 5.08912 5.12065 5.29786 5.34311 5.43666 5.48821 5.54170 5.55239 5.60780 6.00434 6.07564 6.21889 6.34416 6.62996 7.08379 7.33768 8.76554 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.002446 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.469257 B =11445.548927 C =13344.909615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.082 0.918 9 S -0.152 6.152 10 C -0.126 4.126 11 C 0.531 3.469 12 O -0.572 6.572 13 N -0.696 5.696 14 C 0.141 3.859 15 C 0.132 3.868 16 H 0.104 0.896 17 N -0.679 5.679 18 C 0.097 3.903 19 C -0.154 4.154 20 C -0.180 4.180 21 C -0.176 4.176 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.119 4.119 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.417 0.583 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.347 0.653 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.241 -27.480 1.524 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.075 5.925 10 C -0.278 4.278 11 C 0.317 3.683 12 O -0.451 6.451 13 N -0.349 5.349 14 C 0.017 3.983 15 C 0.022 3.978 16 H 0.122 0.878 17 N -0.311 5.311 18 C -0.032 4.032 19 C -0.172 4.172 20 C -0.217 4.217 21 C -0.213 4.213 22 C -0.123 4.123 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.137 4.137 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.255 0.745 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.168 0.832 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.155 0.845 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.270 -27.083 1.338 30.642 hybrid contribution 1.558 0.376 0.226 1.619 sum 15.829 -26.706 1.564 31.084 Atomic orbital electron populations 1.70191 1.07977 1.28564 1.48116 1.26141 0.95985 1.03342 0.93798 0.84946 0.78190 0.75984 0.78806 1.19262 1.20298 1.18202 1.23204 0.95324 0.92014 1.58713 0.89973 1.85563 1.10691 0.99216 1.97029 1.23339 1.03373 0.94460 1.06582 1.20055 0.86206 0.86720 0.75336 1.90685 1.17477 1.86159 1.50759 1.45514 1.10334 1.04460 1.74601 1.21261 0.95569 0.80173 1.01324 1.20580 0.92508 0.88439 0.96289 0.87797 1.60616 1.02077 1.63606 1.04815 1.21501 0.87185 0.97677 0.96820 1.22199 0.90142 1.05230 0.99642 1.23045 1.02720 0.92747 1.03186 1.23024 0.97675 0.96951 1.03695 1.20474 1.01235 0.96284 0.94285 1.21122 0.99405 0.96458 0.97295 1.21403 0.99147 0.94060 0.99768 1.21503 0.99420 1.00800 0.92707 1.21463 0.98567 0.95865 0.98513 1.21309 0.99493 0.94463 0.98450 0.92025 0.87520 0.87373 0.74503 0.92108 0.92988 0.83185 0.94593 0.90456 0.88033 0.88550 0.89065 0.88341 0.88310 0.85572 0.84517 0.84245 0.84232 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.78 13.22 21.65 0.29 -56.49 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.54 -31.62 9.50 67.95 0.65 -30.97 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.81 16 10 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 11 C 0.53 20.46 7.85 87.66 0.69 21.15 16 12 O -0.57 -27.49 15.86 -3.05 -0.05 -27.54 16 13 N -0.70 -18.68 5.39 -463.04 -2.50 -21.18 16 14 C 0.14 3.34 5.35 86.38 0.46 3.81 16 15 C 0.13 2.11 2.38 44.17 0.11 2.21 16 16 H 0.10 1.45 7.66 -2.39 -0.02 1.43 16 17 N -0.68 -9.99 5.67 -495.45 -2.81 -12.80 16 18 C 0.10 1.23 5.76 86.30 0.50 1.73 16 19 C -0.15 -2.00 5.95 -10.79 -0.06 -2.06 16 20 C -0.18 -2.38 10.18 30.59 0.31 -2.07 16 21 C -0.18 -2.00 10.25 30.59 0.31 -1.69 16 22 C -0.12 -1.91 4.71 -19.87 -0.09 -2.00 16 23 C -0.12 -1.94 9.12 22.27 0.20 -1.73 16 24 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 25 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 26 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 27 C -0.12 -1.75 9.67 22.27 0.22 -1.53 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 30 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 31 H 0.42 9.03 8.14 -92.71 -0.75 8.27 16 32 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.35 5.03 6.33 -89.69 -0.57 4.47 16 35 H 0.04 0.47 8.00 -2.39 -0.02 0.45 16 36 H 0.08 0.96 7.79 -2.38 -0.02 0.94 16 37 H 0.10 1.41 8.13 -2.39 -0.02 1.39 16 38 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 39 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.13 1.77 6.50 -2.91 -0.02 1.75 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 44 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 45 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 46 H 0.13 1.59 8.04 -2.91 -0.02 1.56 16 Total: -1.00 -76.31 400.00 0.32 -75.99 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.34 Total: 26.89 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 4.86 Total: -21.22 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -5.02 Total: -90.47 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal Total: -76.31 0.32 -75.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714837015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.246 kcal (2) G-P(sol) polarization free energy of solvation -76.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds