Wall clock time and date at job start Tue Mar 31 2020 18:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48501 * 109.47019 * 306.18284 * 3 2 1 5 5 H 1.48499 * 109.47196 * 66.18380 * 3 2 1 6 6 H 1.48503 * 109.47046 * 186.18514 * 3 2 1 7 7 C 1.38815 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00117 * 20.16801 * 7 2 1 9 9 N 1.36940 * 119.99692 * 200.17034 * 7 2 1 10 10 C 1.46496 * 119.99807 * 193.74289 * 9 7 2 11 11 C 1.53004 * 109.47289 * 284.07071 * 10 9 7 12 12 H 1.08999 * 109.99972 * 65.30772 * 11 10 9 13 13 C 1.54311 * 109.77288 * 186.46128 * 11 10 9 14 14 C 1.55158 * 102.86297 * 141.88472 * 13 11 10 15 15 C 1.54907 * 101.58126 * 324.30160 * 14 13 11 16 16 N 1.47022 * 109.87888 * 304.20692 * 11 10 9 17 17 C 1.34773 * 125.64821 * 61.68611 * 16 11 10 18 18 O 1.21641 * 119.99935 * 7.96221 * 17 16 11 19 19 C 1.47195 * 120.00391 * 187.97353 * 17 16 11 20 20 C 1.35616 * 123.18726 * 37.83887 * 19 17 16 21 21 S 1.70267 * 110.84332 * 180.02562 * 20 19 17 22 22 C 1.75370 * 92.67632 * 0.08649 * 21 20 19 23 23 C 1.34232 * 110.61424 * 359.85238 * 22 21 20 24 24 C 1.52009 * 123.52701 * 180.02562 * 23 22 21 25 25 C 1.53048 * 108.76072 * 343.03874 * 24 23 22 26 26 C 1.53160 * 109.20603 * 50.63991 * 25 24 23 27 27 C 1.51607 * 125.19887 * 180.19056 * 22 21 20 28 28 H 0.96997 * 119.99549 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99524 * 13.74906 * 9 7 2 30 30 H 1.08998 * 109.47012 * 164.07126 * 10 9 7 31 31 H 1.09001 * 109.46984 * 44.06683 * 10 9 7 32 32 H 1.09003 * 110.92759 * 23.46951 * 13 11 10 33 33 H 1.09002 * 110.74563 * 260.21420 * 13 11 10 34 34 H 1.09002 * 111.00161 * 206.22948 * 14 13 11 35 35 H 1.08997 * 111.00452 * 82.37628 * 14 13 11 36 36 H 1.09006 * 110.36691 * 278.17108 * 15 14 13 37 37 H 1.09000 * 110.36978 * 155.84916 * 15 14 13 38 38 H 1.08012 * 124.58113 * 359.97438 * 20 19 17 39 39 H 1.08994 * 109.59653 * 223.25373 * 24 23 22 40 40 H 1.09005 * 109.70734 * 102.88767 * 24 23 22 41 41 H 1.08997 * 109.51783 * 290.71736 * 25 24 23 42 42 H 1.09001 * 109.51524 * 170.55547 * 25 24 23 43 43 H 1.09004 * 109.54214 * 169.74877 * 26 25 24 44 44 H 1.09005 * 109.61447 * 49.53111 * 26 25 24 45 45 H 1.09000 * 109.59463 * 43.39618 * 27 22 21 46 46 H 1.09001 * 109.59940 * 283.08689 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.7819 2.4596 -1.1301 5 1 2.0081 2.3291 1.2808 6 1 3.7032 1.3504 -0.1508 7 6 2.0102 -1.2022 -0.0005 8 1 1.5199 -2.1087 -0.3234 9 7 3.3166 -1.2387 0.4084 10 6 4.1381 -2.4196 0.1312 11 6 3.7543 -3.5453 1.0937 12 1 2.7304 -3.8664 0.9025 13 6 4.7216 -4.7347 0.9182 14 6 4.9168 -5.2388 2.3726 15 6 4.8888 -3.9101 3.1685 16 7 3.8815 -3.0805 2.4827 17 6 3.1877 -2.0676 3.0387 18 8 2.2743 -1.5478 2.4262 19 6 3.5353 -1.5901 4.3870 20 6 4.8116 -1.5019 4.8371 21 16 4.8513 -0.9141 6.4346 22 6 3.1046 -0.7800 6.5159 23 6 2.5463 -1.1706 5.3594 24 6 1.0469 -1.1722 5.1094 25 6 0.3233 -1.0861 6.4553 26 6 0.9032 0.0770 7.2656 27 6 2.3211 -0.2856 7.7160 28 1 -0.4849 0.8401 -0.0004 29 1 3.6980 -0.4827 0.8816 30 1 5.1905 -2.1697 0.2656 31 1 3.9703 -2.7462 -0.8951 32 1 5.6700 -4.4059 0.4934 33 1 4.2714 -5.5103 0.2985 34 1 5.8770 -5.7420 2.4860 35 1 4.0974 -5.8916 2.6731 36 1 5.8653 -3.4268 3.1344 37 1 4.5909 -4.0926 4.2010 38 1 5.6849 -1.7692 4.2604 39 1 0.7622 -2.0926 4.5997 40 1 0.7760 -0.3146 4.4934 41 1 0.4629 -2.0175 7.0040 42 1 -0.7404 -0.9178 6.2867 43 1 0.2783 0.2596 8.1399 44 1 0.9354 0.9739 6.6468 45 1 2.8088 0.5954 8.1333 46 1 2.2752 -1.0703 8.4712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715213811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:55 Heat of formation + Delta-G solvation = 27.269667 kcal Electronic energy + Delta-G solvation = -28152.432464 eV Core-core repulsion = 24555.340014 eV Total energy + Delta-G solvation = -3597.092451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.87749 -38.55654 -36.56947 -34.93215 -34.12868 -31.30244 -31.12560 -30.64278 -29.10736 -28.58687 -25.15179 -24.64179 -23.18498 -22.80504 -21.68350 -21.08509 -20.25080 -18.39473 -18.07734 -17.56156 -16.98595 -16.21582 -16.06564 -14.80559 -14.43071 -14.33479 -14.15852 -14.08575 -13.80727 -13.70888 -13.30216 -12.99291 -12.89807 -12.82168 -12.56401 -12.45851 -12.16506 -12.04741 -11.77644 -11.38088 -11.30831 -11.21483 -11.03994 -10.98232 -10.81735 -10.75054 -10.53126 -10.52380 -10.33907 -10.25682 -9.93109 -9.34593 -9.01144 -8.44092 -8.39130 -8.07291 -7.83874 -6.71296 -5.50770 -2.74807 1.06009 1.68101 2.09335 2.40687 3.57112 3.59637 3.65556 3.66371 3.93656 4.63293 4.75336 4.81815 4.89967 4.91170 4.93824 5.02377 5.08389 5.28157 5.31482 5.45320 5.48157 5.57365 5.61217 5.66725 5.72631 5.72811 5.77113 5.84952 5.85955 5.96582 6.03147 6.04912 6.08315 6.14181 6.17403 6.21301 6.30714 6.38103 6.41369 6.51319 6.58410 6.77237 6.83431 7.15273 8.26313 8.30388 8.69050 9.17097 9.49731 10.24667 10.44155 11.68868 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009363 B = 0.005973 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.836579 B = 4686.571300 C = 6468.718233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.017 3.983 3 Si 0.859 3.141 4 H -0.298 1.298 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.194 4.194 8 H 0.076 0.924 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.118 3.882 12 H 0.073 0.927 13 C -0.127 4.127 14 C -0.132 4.132 15 C 0.104 3.896 16 N -0.611 5.611 17 C 0.552 3.448 18 O -0.420 6.420 19 C -0.120 4.120 20 C -0.225 4.225 21 S 0.143 5.857 22 C -0.211 4.211 23 C -0.050 4.050 24 C -0.054 4.054 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.040 4.040 28 H 0.251 0.749 29 H 0.358 0.642 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.165 0.835 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.067 -7.960 15.855 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.178 4.178 3 Si 0.690 3.310 4 H -0.226 1.226 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.323 4.323 8 H 0.094 0.906 9 N -0.370 5.370 10 C 0.015 3.985 11 C 0.012 3.988 12 H 0.091 0.909 13 C -0.166 4.166 14 C -0.170 4.170 15 C -0.020 4.020 16 N -0.350 5.350 17 C 0.336 3.664 18 O -0.287 6.287 19 C -0.138 4.138 20 C -0.362 4.362 21 S 0.411 5.589 22 C -0.327 4.327 23 C -0.061 4.061 24 C -0.093 4.093 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.079 4.079 28 H 0.061 0.939 29 H 0.190 0.810 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.183 0.817 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.472 -7.308 16.423 21.324 hybrid contribution -0.194 0.868 -0.929 1.286 sum 11.278 -6.440 15.494 20.217 Atomic orbital electron populations 1.69867 1.05257 1.24945 1.57161 1.24569 0.94741 0.96475 1.02013 0.86732 0.80159 0.87301 0.76814 1.22619 1.22215 1.20424 1.18597 0.85175 0.94187 1.34381 0.90614 1.42532 1.10766 1.15881 1.67803 1.21037 0.93141 0.88387 0.95984 1.22375 0.99381 0.94454 0.82545 0.90865 1.22669 0.99928 0.97609 0.96387 1.22742 1.01978 0.96530 0.95796 1.22201 0.92189 0.90918 0.96657 1.48148 1.41218 1.33760 1.11838 1.17378 0.84198 0.80416 0.84446 1.91325 1.25093 1.53039 1.59266 1.20481 0.91957 1.04929 0.96395 1.25343 1.01021 1.08858 1.01002 1.82555 1.03587 1.63807 1.08933 1.24574 0.96187 1.11476 1.00489 1.20518 0.96441 0.98302 0.90862 1.20469 0.87732 1.04257 0.96852 1.21588 0.99786 0.98293 0.95960 1.21587 0.94690 0.99213 1.00064 1.20245 0.94447 1.00271 0.92938 0.93899 0.81037 0.94289 0.93480 0.90950 0.90641 0.90647 0.90968 0.92734 0.91548 0.81738 0.90208 0.89194 0.92017 0.91192 0.91369 0.91298 0.90885 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -30.40 13.97 55.49 0.78 -29.62 16 2 C 0.02 0.52 5.40 -17.43 -0.09 0.43 16 3 Si 0.86 23.79 27.90 -169.99 -4.74 19.05 16 4 H -0.30 -8.33 7.11 56.52 0.40 -7.93 16 5 H -0.29 -8.34 7.11 56.52 0.40 -7.94 16 6 H -0.28 -7.39 6.71 56.52 0.38 -7.01 16 7 C -0.19 -5.65 7.82 -15.06 -0.12 -5.76 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 N -0.73 -18.13 2.70 -59.91 -0.16 -18.29 16 10 C 0.14 2.84 5.93 -4.04 -0.02 2.81 16 11 C 0.12 2.05 3.15 -66.96 -0.21 1.84 16 12 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 13 C -0.13 -1.55 6.47 -24.90 -0.16 -1.71 16 14 C -0.13 -1.40 7.08 -24.58 -0.17 -1.58 16 15 C 0.10 1.31 5.40 -2.53 -0.01 1.29 16 16 N -0.61 -10.47 3.06 -164.36 -0.50 -10.98 16 17 C 0.55 11.18 6.67 -12.62 -0.08 11.10 16 18 O -0.42 -10.66 11.51 5.24 0.06 -10.60 16 19 C -0.12 -2.08 5.40 -104.56 -0.56 -2.64 16 20 C -0.23 -3.20 9.26 29.79 0.28 -2.92 16 21 S 0.14 1.72 22.98 -107.50 -2.47 -0.75 16 22 C -0.21 -2.90 6.33 -35.27 -0.22 -3.12 16 23 C -0.05 -0.83 5.94 -102.75 -0.61 -1.44 16 24 C -0.05 -0.91 5.12 -27.21 -0.14 -1.05 16 25 C -0.12 -1.52 5.90 -26.62 -0.16 -1.68 16 26 C -0.12 -1.31 5.93 -26.58 -0.16 -1.47 16 27 C -0.04 -0.43 6.25 -27.37 -0.17 -0.60 16 28 H 0.25 7.95 8.31 -40.82 -0.34 7.61 16 29 H 0.36 9.25 6.26 -40.82 -0.26 9.00 16 30 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 37 H 0.07 0.81 7.54 -51.93 -0.39 0.42 16 38 H 0.17 2.07 6.53 -52.48 -0.34 1.72 16 39 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 40 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -35.16 366.52 -11.40 -46.56 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.25 Total: 5.62 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.63 Total: -6.51 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.11 Total: -58.89 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.06 Total: -10.60 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.74 Total: 19.05 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.47 Total: -0.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.16 -11.40 -46.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715213811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.825 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds