Wall clock time and date at job start Tue Mar 31 2020 18:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48501 * 109.47019 * 306.18284 * 3 2 1 5 5 H 1.48499 * 109.47196 * 66.18380 * 3 2 1 6 6 H 1.48503 * 109.47046 * 186.18514 * 3 2 1 7 7 C 1.38815 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00117 * 20.16801 * 7 2 1 9 9 N 1.36940 * 119.99692 * 200.17034 * 7 2 1 10 10 C 1.46496 * 119.99807 * 193.74289 * 9 7 2 11 11 C 1.53004 * 109.47289 * 284.07071 * 10 9 7 12 12 H 1.08999 * 109.99972 * 65.30772 * 11 10 9 13 13 C 1.54311 * 109.77288 * 186.46128 * 11 10 9 14 14 C 1.55158 * 102.86297 * 141.88472 * 13 11 10 15 15 C 1.54907 * 101.58126 * 324.30160 * 14 13 11 16 16 N 1.47022 * 109.87888 * 304.20692 * 11 10 9 17 17 C 1.34773 * 125.64821 * 61.68611 * 16 11 10 18 18 O 1.21641 * 119.99935 * 7.96221 * 17 16 11 19 19 C 1.47195 * 120.00391 * 187.97353 * 17 16 11 20 20 C 1.35616 * 123.18726 * 37.83887 * 19 17 16 21 21 S 1.70267 * 110.84332 * 180.02562 * 20 19 17 22 22 C 1.75370 * 92.67632 * 0.08649 * 21 20 19 23 23 C 1.34232 * 110.61424 * 359.85238 * 22 21 20 24 24 C 1.52009 * 123.52701 * 180.02562 * 23 22 21 25 25 C 1.53048 * 108.76072 * 343.03874 * 24 23 22 26 26 C 1.53160 * 109.20603 * 50.63991 * 25 24 23 27 27 C 1.51607 * 125.19887 * 180.19056 * 22 21 20 28 28 H 0.96997 * 119.99549 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99524 * 13.74906 * 9 7 2 30 30 H 1.08998 * 109.47012 * 164.07126 * 10 9 7 31 31 H 1.09001 * 109.46984 * 44.06683 * 10 9 7 32 32 H 1.09003 * 110.92759 * 23.46951 * 13 11 10 33 33 H 1.09002 * 110.74563 * 260.21420 * 13 11 10 34 34 H 1.09002 * 111.00161 * 206.22948 * 14 13 11 35 35 H 1.08997 * 111.00452 * 82.37628 * 14 13 11 36 36 H 1.09006 * 110.36691 * 278.17108 * 15 14 13 37 37 H 1.09000 * 110.36978 * 155.84916 * 15 14 13 38 38 H 1.08012 * 124.58113 * 359.97438 * 20 19 17 39 39 H 1.08994 * 109.59653 * 223.25373 * 24 23 22 40 40 H 1.09005 * 109.70734 * 102.88767 * 24 23 22 41 41 H 1.08997 * 109.51783 * 290.71736 * 25 24 23 42 42 H 1.09001 * 109.51524 * 170.55547 * 25 24 23 43 43 H 1.09004 * 109.54214 * 169.74877 * 26 25 24 44 44 H 1.09005 * 109.61447 * 49.53111 * 26 25 24 45 45 H 1.09000 * 109.59463 * 43.39618 * 27 22 21 46 46 H 1.09001 * 109.59940 * 283.08689 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.7819 2.4596 -1.1301 5 1 2.0081 2.3291 1.2808 6 1 3.7032 1.3504 -0.1508 7 6 2.0102 -1.2022 -0.0005 8 1 1.5199 -2.1087 -0.3234 9 7 3.3166 -1.2387 0.4084 10 6 4.1381 -2.4196 0.1312 11 6 3.7543 -3.5453 1.0937 12 1 2.7304 -3.8664 0.9025 13 6 4.7216 -4.7347 0.9182 14 6 4.9168 -5.2388 2.3726 15 6 4.8888 -3.9101 3.1685 16 7 3.8815 -3.0805 2.4827 17 6 3.1877 -2.0676 3.0387 18 8 2.2743 -1.5478 2.4262 19 6 3.5353 -1.5901 4.3870 20 6 4.8116 -1.5019 4.8371 21 16 4.8513 -0.9141 6.4346 22 6 3.1046 -0.7800 6.5159 23 6 2.5463 -1.1706 5.3594 24 6 1.0469 -1.1722 5.1094 25 6 0.3233 -1.0861 6.4553 26 6 0.9032 0.0770 7.2656 27 6 2.3211 -0.2856 7.7160 28 1 -0.4849 0.8401 -0.0004 29 1 3.6980 -0.4827 0.8816 30 1 5.1905 -2.1697 0.2656 31 1 3.9703 -2.7462 -0.8951 32 1 5.6700 -4.4059 0.4934 33 1 4.2714 -5.5103 0.2985 34 1 5.8770 -5.7420 2.4860 35 1 4.0974 -5.8916 2.6731 36 1 5.8653 -3.4268 3.1344 37 1 4.5909 -4.0926 4.2010 38 1 5.6849 -1.7692 4.2604 39 1 0.7622 -2.0926 4.5997 40 1 0.7760 -0.3146 4.4934 41 1 0.4629 -2.0175 7.0040 42 1 -0.7404 -0.9178 6.2867 43 1 0.2783 0.2596 8.1399 44 1 0.9354 0.9739 6.6468 45 1 2.8088 0.5954 8.1333 46 1 2.2752 -1.0703 8.4712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715213811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:54 Heat of formation + Delta-G solvation = 4.760135 kcal Electronic energy + Delta-G solvation = -28153.408551 eV Core-core repulsion = 24555.340014 eV Total energy + Delta-G solvation = -3598.068537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.21864 -39.70736 -37.96236 -36.50724 -35.69011 -33.39301 -32.40581 -31.73747 -30.58625 -29.79446 -26.76790 -26.02812 -24.36608 -24.17245 -23.16759 -22.24294 -21.50102 -19.99296 -19.50025 -19.18319 -18.13344 -17.57681 -17.30889 -16.48613 -16.14370 -15.84027 -15.53401 -15.30689 -15.08349 -14.84665 -14.77725 -14.43638 -14.24934 -14.06396 -13.95753 -13.76266 -13.52194 -13.33675 -13.21651 -12.95536 -12.88724 -12.51484 -12.45387 -12.33770 -12.20605 -12.04546 -11.86457 -11.79729 -11.73118 -11.58592 -11.51143 -11.29733 -10.81587 -10.27210 -9.58107 -9.51691 -9.13741 -8.69840 -7.89957 -5.09199 -0.07605 0.63988 0.96894 1.14157 1.33355 1.34003 1.43971 2.26151 2.50688 2.60089 3.35777 3.60283 3.67474 3.76100 3.83632 3.94963 4.00401 4.05592 4.13410 4.19411 4.24017 4.31601 4.41379 4.50721 4.56399 4.65002 4.68359 4.72017 4.73531 4.82248 4.90731 4.96476 4.99444 5.00780 5.04578 5.06560 5.15393 5.17194 5.22924 5.31671 5.39337 5.43177 5.57823 5.80167 5.90629 6.33691 6.89358 7.24981 7.70296 8.01918 8.18425 9.34435 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009363 B = 0.005973 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.836579 B = 4686.571300 C = 6468.718233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.054 4.054 3 Si 0.928 3.072 4 H -0.300 1.300 5 H -0.308 1.308 6 H -0.255 1.255 7 C -0.154 4.154 8 H 0.035 0.965 9 N -0.731 5.731 10 C 0.139 3.861 11 C 0.118 3.882 12 H 0.022 0.978 13 C -0.114 4.114 14 C -0.121 4.121 15 C 0.098 3.902 16 N -0.612 5.612 17 C 0.548 3.452 18 O -0.497 6.497 19 C -0.158 4.158 20 C -0.221 4.221 21 S 0.236 5.764 22 C -0.209 4.209 23 C -0.090 4.090 24 C -0.048 4.048 25 C -0.112 4.112 26 C -0.114 4.114 27 C -0.041 4.041 28 H 0.245 0.755 29 H 0.354 0.646 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.185 0.815 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.048 0.952 45 H 0.096 0.904 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.022 -8.695 18.991 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.244 4.244 3 Si 0.759 3.241 4 H -0.228 1.228 5 H -0.236 1.236 6 H -0.179 1.179 7 C -0.286 4.286 8 H 0.053 0.947 9 N -0.370 5.370 10 C 0.010 3.990 11 C 0.011 3.989 12 H 0.040 0.960 13 C -0.153 4.153 14 C -0.158 4.158 15 C -0.024 4.024 16 N -0.349 5.349 17 C 0.334 3.666 18 O -0.370 6.370 19 C -0.176 4.176 20 C -0.358 4.358 21 S 0.506 5.494 22 C -0.326 4.326 23 C -0.101 4.101 24 C -0.087 4.087 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.080 4.080 28 H 0.054 0.946 29 H 0.185 0.815 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.202 0.798 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.067 0.933 45 H 0.114 0.886 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.539 -8.115 19.570 26.877 hybrid contribution -1.631 0.919 -1.782 2.585 sum 14.908 -7.196 17.788 24.299 Atomic orbital electron populations 1.70032 1.07105 1.25194 1.60837 1.25164 0.95403 0.99907 1.03925 0.85623 0.79969 0.82766 0.75731 1.22774 1.23644 1.17920 1.18394 0.86845 0.92204 1.31114 0.94719 1.42448 1.09543 1.17502 1.67520 1.21359 0.94049 0.86994 0.96548 1.22220 0.98304 0.95707 0.82637 0.95975 1.22629 0.99269 0.95244 0.98150 1.22764 1.03986 0.95491 0.93596 1.22535 0.91761 0.91279 0.96805 1.48285 1.41403 1.33218 1.11995 1.17956 0.83103 0.80256 0.85321 1.91270 1.28336 1.55773 1.61613 1.20298 0.93705 1.08162 0.95468 1.25629 1.00148 1.07246 1.02779 1.82236 1.00531 1.60947 1.05729 1.25097 0.98334 1.08992 1.00209 1.20466 0.95680 1.01465 0.92502 1.20241 0.90059 1.00242 0.98193 1.21564 0.99310 1.00129 0.93975 1.21587 0.95975 0.97242 1.00453 1.20443 0.93445 1.01958 0.92125 0.94580 0.81493 0.90840 0.93544 0.88431 0.89677 0.86533 0.91590 0.90029 0.91074 0.79791 0.93858 0.94063 0.90442 0.91306 0.88176 0.93315 0.88596 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -69.29 13.97 21.65 0.30 -68.98 16 2 C -0.05 -3.52 5.40 84.86 0.46 -3.06 16 3 Si 0.93 51.95 27.90 68.60 1.91 53.86 16 4 H -0.30 -16.63 7.11 99.48 0.71 -15.92 16 5 H -0.31 -17.74 7.11 99.48 0.71 -17.03 16 6 H -0.26 -13.05 6.71 99.48 0.67 -12.38 16 7 C -0.15 -9.58 7.82 84.03 0.66 -8.92 16 8 H 0.03 2.40 8.06 -2.91 -0.02 2.37 16 9 N -0.73 -37.44 2.70 -343.45 -0.93 -38.36 16 10 C 0.14 5.41 5.93 86.38 0.51 5.92 16 11 C 0.12 4.13 3.15 45.34 0.14 4.27 16 12 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 13 C -0.11 -2.48 6.47 31.78 0.21 -2.27 16 14 C -0.12 -2.10 7.08 31.99 0.23 -1.87 16 15 C 0.10 2.16 5.40 86.85 0.47 2.63 16 16 N -0.61 -21.03 3.06 -792.16 -2.43 -23.46 16 17 C 0.55 23.32 6.67 86.60 0.58 23.89 16 18 O -0.50 -27.53 11.51 -4.16 -0.05 -27.58 16 19 C -0.16 -5.56 5.40 -19.82 -0.11 -5.66 16 20 C -0.22 -5.66 9.26 67.21 0.62 -5.04 16 21 S 0.24 4.69 22.98 -56.49 -1.30 3.39 16 22 C -0.21 -5.31 6.33 25.06 0.16 -5.15 16 23 C -0.09 -3.08 5.94 -18.65 -0.11 -3.19 16 24 C -0.05 -1.80 5.12 30.28 0.16 -1.65 16 25 C -0.11 -2.99 5.90 30.66 0.18 -2.81 16 26 C -0.11 -2.41 5.93 30.69 0.18 -2.23 16 27 C -0.04 -0.75 6.25 30.18 0.19 -0.56 16 28 H 0.25 16.72 8.31 -92.71 -0.77 15.95 16 29 H 0.35 18.60 6.26 -92.71 -0.58 18.02 16 30 H 0.07 2.37 8.04 -2.39 -0.02 2.36 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.10 1.70 7.79 -2.39 -0.02 1.68 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.42 7.15 -2.38 -0.02 1.40 16 37 H 0.07 1.53 7.54 -2.39 -0.02 1.51 16 38 H 0.18 3.84 6.53 -2.90 -0.02 3.82 16 39 H 0.04 1.85 8.11 -2.39 -0.02 1.83 16 40 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 43 H 0.10 1.51 8.14 -2.38 -0.02 1.50 16 44 H 0.05 1.23 8.11 -2.38 -0.02 1.21 16 45 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -87.87 366.52 2.40 -85.48 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.36 Total: 21.36 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 4.52 Total: -5.70 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -3.05 Total: -130.81 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 1.91 Total: 53.86 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.30 Total: 3.39 kcal Total: -87.87 2.40 -85.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715213811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.236 kcal (2) G-P(sol) polarization free energy of solvation -87.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds