Wall clock time and date at job start Tue Mar 31 2020 17:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 117.00216 * 2 1 4 4 C 1.38180 * 120.21351 * 359.72542 * 3 2 1 5 5 C 1.38831 * 120.67690 * 179.69921 * 4 3 2 6 6 C 1.36712 * 120.58537 * 0.61504 * 5 4 3 7 7 C 1.39244 * 119.75535 * 359.67821 * 6 5 4 8 8 C 1.46906 * 135.44080 * 180.02562 * 7 6 5 9 9 C 1.47370 * 126.81323 * 359.96140 * 8 7 6 10 10 O 1.21616 * 120.00161 * 359.97125 * 9 8 7 11 11 N 1.34777 * 119.99929 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00294 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47249 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47178 * 305.00421 * 13 12 11 15 15 O 1.42903 * 109.47087 * 65.00245 * 13 12 11 16 16 C 1.52995 * 109.46961 * 185.00447 * 13 12 11 17 17 N 1.46500 * 109.47095 * 180.02562 * 16 13 12 18 18 C 1.36943 * 119.99857 * 179.97438 * 17 16 13 19 19 H 1.07991 * 120.00231 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99639 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00196 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99797 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47421 * 60.00063 * 22 20 18 24 24 H 1.48495 * 109.46996 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46933 * 300.00305 * 22 20 18 26 26 N 1.31597 * 106.37241 * 179.97438 * 8 7 6 27 27 N 1.28386 * 111.93634 * 359.97438 * 26 8 7 28 28 H 0.97000 * 124.38292 * 179.97438 * 27 26 8 29 29 C 1.37099 * 111.23289 * 0.02562 * 27 26 8 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99696 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99817 * 1 2 3 33 33 H 1.08001 * 119.65970 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.70392 * 180.27002 * 5 4 3 35 35 H 1.07999 * 120.12137 * 179.66328 * 6 5 4 36 36 H 0.97010 * 119.99811 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.46875 * 300.00269 * 12 11 9 38 38 H 1.09006 * 109.46671 * 60.00129 * 12 11 9 39 39 H 0.96701 * 113.99886 * 60.00122 * 15 13 12 40 40 H 1.09003 * 109.47153 * 299.99989 * 16 13 12 41 41 H 1.09000 * 109.47483 * 59.99733 * 16 13 12 42 42 H 0.96997 * 120.00173 * 0.02562 * 17 16 13 43 43 H 0.96999 * 120.00249 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3727 -0.0057 5 6 1.9182 3.6148 0.0005 6 6 3.2819 3.7113 -0.0002 7 6 4.0566 2.5542 -0.0005 8 6 5.4955 2.2579 -0.0007 9 6 6.5983 3.2354 -0.0016 10 8 6.3549 4.4269 -0.0027 11 7 7.8768 2.8088 -0.0012 12 6 8.9733 3.7805 -0.0026 13 6 10.3117 3.0392 -0.0025 14 1 10.3442 2.3482 0.8400 15 8 10.4520 2.3091 -1.2229 16 6 11.4540 4.0492 0.1219 17 7 12.7356 3.3395 0.1214 18 6 13.9071 4.0414 0.2230 19 1 13.8862 5.1181 0.3040 20 6 15.1214 3.3688 0.2231 21 7 15.1469 2.0566 0.1250 22 14 16.7193 4.3262 0.3625 23 1 16.7308 5.0874 1.6375 24 1 17.8655 3.3824 0.3386 25 1 16.8320 5.2700 -0.7785 26 7 5.6041 0.9464 -0.0003 27 7 4.4569 0.3701 0.0007 28 1 4.3267 -0.5911 0.0008 29 6 3.4395 1.2892 0.0005 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 0.2195 2.3139 -0.0098 34 1 1.3181 4.5126 0.0003 35 1 3.7566 4.6814 -0.0009 36 1 8.0710 1.8584 -0.0007 37 1 8.9042 4.4049 -0.8934 38 1 8.9045 4.4071 0.8866 39 1 10.4319 2.8617 -2.0163 40 1 11.4215 4.7402 -0.7206 41 1 11.3470 4.6061 1.0528 42 1 12.7545 2.3725 0.0484 43 1 15.9954 1.5866 0.1247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716088489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:48 Heat of formation + Delta-G solvation = -50.993488 kcal Electronic energy + Delta-G solvation = -27200.940398 eV Core-core repulsion = 23054.160988 eV Total energy + Delta-G solvation = -4146.779410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.62920 -40.72884 -40.35885 -38.88521 -37.79661 -36.05695 -35.33519 -33.38772 -33.09928 -31.52461 -30.86702 -30.10939 -28.20772 -27.33405 -25.36311 -24.18405 -23.78547 -23.17420 -22.74102 -21.20772 -19.89054 -19.22337 -18.84643 -18.32100 -17.73748 -17.35499 -17.06802 -17.00274 -16.48950 -16.43326 -16.31412 -16.22925 -15.76503 -15.55925 -15.42309 -14.95960 -14.70494 -14.46382 -14.15563 -13.83214 -13.40106 -13.28479 -13.22041 -12.94197 -12.70441 -12.69182 -12.28619 -12.19313 -12.16205 -12.13938 -11.97019 -11.78792 -11.44446 -10.97228 -10.91786 -10.88885 -10.19603 -9.94993 -8.99263 -8.75415 -7.93025 -5.22588 -0.28600 0.20761 0.76346 1.48553 1.51962 1.56476 1.58192 1.93501 2.13401 2.23430 2.57599 2.67794 3.13194 3.37834 3.38889 3.49018 3.60537 3.75003 3.92232 4.05274 4.11816 4.21680 4.26429 4.38257 4.42768 4.44398 4.46588 4.64114 4.69877 4.74115 4.79300 4.96087 5.01253 5.21195 5.28453 5.30950 5.49539 5.49891 5.62536 5.83782 6.25301 6.27642 6.34993 6.67944 6.82054 7.05046 7.34939 8.10862 8.33973 9.29997 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.036028 B = 0.001771 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.996966 B =15803.189512 C =16445.496910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.131 3.869 4 C -0.178 4.178 5 C -0.085 4.085 6 C -0.108 4.108 7 C -0.092 4.092 8 C -0.031 4.031 9 C 0.606 3.394 10 O -0.560 6.560 11 N -0.700 5.700 12 C 0.102 3.898 13 C 0.107 3.893 14 H 0.100 0.900 15 O -0.564 6.564 16 C 0.123 3.877 17 N -0.740 5.740 18 C -0.250 4.250 19 H 0.078 0.922 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.976 3.024 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.277 1.277 26 N -0.195 5.195 27 N -0.387 5.387 28 H 0.463 0.537 29 C 0.028 3.972 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.131 0.869 36 H 0.415 0.585 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.385 0.615 40 H 0.033 0.967 41 H 0.036 0.964 42 H 0.376 0.624 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.867 -2.898 -0.783 36.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.082 3.918 4 C -0.199 4.199 5 C -0.104 4.104 6 C -0.128 4.128 7 C -0.100 4.100 8 C -0.200 4.200 9 C 0.391 3.609 10 O -0.437 6.437 11 N -0.351 5.351 12 C -0.022 4.022 13 C 0.047 3.953 14 H 0.117 0.883 15 O -0.370 6.370 16 C -0.005 4.005 17 N -0.383 5.383 18 C -0.382 4.382 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.805 3.195 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.203 1.203 26 N -0.028 5.028 27 N -0.111 5.111 28 H 0.311 0.689 29 C -0.086 4.086 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.189 0.811 34 H 0.181 0.819 35 H 0.149 0.851 36 H 0.251 0.749 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.234 0.766 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.209 0.791 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -36.019 -3.425 -0.360 36.184 hybrid contribution 0.580 0.122 -0.273 0.653 sum -35.439 -3.304 -0.633 35.598 Atomic orbital electron populations 1.23434 0.75432 1.05902 1.02903 1.86011 1.24266 1.25756 1.88769 1.17891 0.87053 0.86561 1.00274 1.21438 1.01605 0.90429 1.06460 1.20977 0.93257 0.98646 0.97474 1.20400 0.94043 0.96878 1.01481 1.19438 0.90900 0.93788 1.05855 1.22555 0.93146 0.89818 1.14457 1.16727 0.81631 0.86296 0.76250 1.90774 1.84353 1.16538 1.52071 1.45674 1.04373 1.11577 1.73476 1.21986 0.84805 0.91461 1.03950 1.22109 0.91195 0.93787 0.88217 0.88257 1.86568 1.96016 1.38416 1.16032 1.21396 0.85453 0.94271 0.99342 1.42406 1.00854 1.06290 1.88738 1.19636 0.85569 0.91762 1.41186 0.90454 1.25610 1.01123 0.96532 1.03569 1.69835 1.25526 1.07538 1.58972 0.85180 0.78925 0.77207 0.78231 1.20318 1.22220 1.20323 1.72882 1.09230 1.08738 1.11912 1.43037 0.99898 1.10226 1.57907 0.68896 1.18540 0.89489 0.89781 1.10757 0.86332 0.91037 0.91039 0.81103 0.81858 0.85116 0.74851 0.90068 0.89755 0.76598 0.94867 0.94612 0.79128 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.18 16 2 O -0.33 -4.12 10.51 -92.65 -0.97 -5.09 16 3 C 0.13 2.02 6.70 22.57 0.15 2.17 16 4 C -0.18 -2.03 9.03 22.40 0.20 -1.83 16 5 C -0.08 -1.13 9.97 22.05 0.22 -0.91 16 6 C -0.11 -2.23 9.86 22.15 0.22 -2.01 16 7 C -0.09 -2.24 6.33 -20.15 -0.13 -2.37 16 8 C -0.03 -0.82 7.32 43.86 0.32 -0.50 16 9 C 0.61 17.61 7.81 86.65 0.68 18.29 16 10 O -0.56 -18.86 16.38 -4.08 -0.07 -18.93 16 11 N -0.70 -18.29 5.50 -466.41 -2.56 -20.85 16 12 C 0.10 2.69 5.31 86.38 0.46 3.15 16 13 C 0.11 3.30 3.09 30.59 0.09 3.39 16 14 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 15 O -0.56 -18.22 13.03 -148.98 -1.94 -20.16 16 16 C 0.12 4.70 5.92 86.38 0.51 5.21 16 17 N -0.74 -37.81 5.49 -343.45 -1.89 -39.70 16 18 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 19 H 0.08 4.14 7.83 -2.92 -0.02 4.12 16 20 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 21 N -0.97 -60.38 13.06 21.65 0.28 -60.09 16 22 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 N -0.19 -4.56 11.80 -44.87 -0.53 -5.09 16 27 N -0.39 -7.31 6.85 -51.37 -0.35 -7.66 16 28 H 0.46 5.71 8.96 -220.03 -1.97 3.73 16 29 C 0.03 0.56 7.32 39.25 0.29 0.85 16 30 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.07 0.10 7.65 -2.39 -0.02 0.08 16 32 H 0.07 0.10 7.68 -2.38 -0.02 0.08 16 33 H 0.17 0.69 6.27 -2.91 -0.02 0.67 16 34 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.13 2.90 7.63 -2.91 -0.02 2.87 16 36 H 0.41 10.29 8.21 -92.70 -0.76 9.53 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.39 10.28 9.05 -74.06 -0.67 9.61 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.38 20.92 7.54 -92.71 -0.70 20.23 16 43 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -77.09 373.50 -3.56 -80.65 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -2.99 Total: 38.92 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.43 Total: 9.40 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -5.05 Total: -133.40 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -2.98 Total: -44.18 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -77.09 -3.56 -80.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716088489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.659 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds