Wall clock time and date at job start Tue Mar 31 2020 18:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99797 * 2 1 4 4 H 1.48506 * 109.46989 * 269.99796 * 3 2 1 5 5 H 1.48503 * 109.47369 * 29.99395 * 3 2 1 6 6 H 1.48493 * 109.47537 * 149.99976 * 3 2 1 7 7 C 1.38805 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00137 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00153 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00392 * 173.74828 * 9 7 2 11 11 C 1.53003 * 115.54806 * 295.37475 * 10 9 7 12 12 N 1.46497 * 109.46760 * 279.54872 * 11 10 9 13 13 C 1.34779 * 119.99762 * 178.33536 * 12 11 10 14 14 O 1.21709 * 119.99746 * 0.02562 * 13 12 11 15 15 C 1.46580 * 120.00196 * 180.02562 * 13 12 11 16 16 C 1.36271 * 125.49370 * 180.08709 * 15 13 12 17 17 C 1.38454 * 113.82860 * 180.02562 * 16 15 13 18 18 C 1.33804 * 114.14056 * 0.21808 * 17 16 15 19 19 S 1.70741 * 111.48519 * 359.61012 * 18 17 16 20 20 C 1.52642 * 124.22703 * 179.48303 * 18 17 16 21 21 C 1.53108 * 107.60555 * 66.39207 * 20 18 17 22 22 C 1.51044 * 111.18288 * 279.24834 * 21 20 18 23 23 C 1.50984 * 115.79553 * 71.86628 * 22 21 20 24 24 C 1.52937 * 111.54047 * 287.69674 * 23 22 21 25 25 C 1.53004 * 117.49915 * 81.04019 * 10 9 7 26 26 C 1.53000 * 117.50349 * 149.70046 * 10 9 7 27 27 H 0.96998 * 120.00436 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00150 * 353.74592 * 9 7 2 29 29 H 1.09003 * 109.46901 * 159.54862 * 11 10 9 30 30 H 1.08997 * 109.47200 * 39.55473 * 11 10 9 31 31 H 0.97001 * 120.00468 * 358.34401 * 12 11 10 32 32 H 1.08004 * 123.08125 * 359.93218 * 16 15 13 33 33 H 1.08999 * 109.83398 * 185.91430 * 20 18 17 34 34 H 1.08998 * 109.83337 * 306.80349 * 20 18 17 35 35 H 1.08989 * 109.13924 * 39.68948 * 21 20 18 36 36 H 1.09006 * 109.13384 * 158.81273 * 21 20 18 37 37 H 1.08999 * 108.21911 * 193.51158 * 22 21 20 38 38 H 1.09000 * 108.21701 * 310.23040 * 22 21 20 39 39 H 1.09001 * 109.06473 * 48.22280 * 23 22 21 40 40 H 1.08994 * 109.06751 * 167.23470 * 23 22 21 41 41 H 1.09003 * 109.82017 * 321.63102 * 24 23 22 42 42 H 1.08999 * 109.82002 * 200.70325 * 24 23 22 43 43 H 1.09003 * 117.49775 * 215.00662 * 25 10 9 44 44 H 1.09001 * 117.49670 * 0.02562 * 25 10 9 45 45 H 1.09005 * 117.49497 * 359.97438 * 26 10 9 46 46 H 1.08996 * 117.49826 * 144.97585 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4631 0.1398 11 6 3.9293 -3.1891 1.4742 12 7 4.7965 -2.5786 2.4849 13 6 4.7785 -3.0353 3.7528 14 8 4.0422 -3.9552 4.0579 15 6 5.6456 -2.4243 4.7644 16 6 5.7189 -2.7967 6.0731 17 6 6.6202 -2.0539 6.8165 18 6 7.2525 -1.1031 6.1190 19 16 6.7588 -1.0939 4.4845 20 6 8.2830 -0.1455 6.7114 21 6 9.5051 -0.9737 7.1174 22 6 9.2889 -1.6473 8.4519 23 6 8.3110 -2.7977 8.4564 24 6 6.8695 -2.3098 8.3051 25 6 4.2829 -3.3226 -1.1145 26 6 5.4804 -2.5636 -0.5374 27 1 -0.4851 0.8400 -0.0004 28 1 3.8646 -0.3670 -0.0904 29 1 4.1937 -4.2399 1.3553 30 1 2.8896 -3.1097 1.7915 31 1 5.3834 -1.8457 2.2417 32 1 5.1269 -3.5969 6.4923 33 1 8.5701 0.5962 5.9660 34 1 7.8652 0.3524 7.5864 35 1 9.6894 -1.7343 6.3589 36 1 10.3742 -0.3191 7.1842 37 1 10.2510 -2.0165 8.8071 38 1 8.9355 -0.8970 9.1591 39 1 8.5479 -3.4696 7.6315 40 1 8.4050 -3.3413 9.3965 41 1 6.7309 -1.3863 8.8674 42 1 6.1811 -3.0723 8.6695 43 1 4.2650 -4.4052 -0.9889 44 1 3.8505 -2.9495 -2.0429 45 1 5.8354 -1.6914 -1.0866 46 1 6.2504 -3.1465 -0.0322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716700122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:37 Heat of formation + Delta-G solvation = 16.609650 kcal Electronic energy + Delta-G solvation = -26046.976273 eV Core-core repulsion = 22449.421570 eV Total energy + Delta-G solvation = -3597.554704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.80854 -39.13020 -37.63385 -35.73541 -33.84903 -33.03591 -32.58104 -30.58770 -30.37155 -27.29316 -25.54562 -25.00685 -23.61210 -22.56157 -21.89961 -20.88958 -20.25156 -19.38194 -18.46447 -17.90337 -17.63951 -16.50786 -15.75833 -15.60605 -15.20798 -14.89371 -14.74188 -14.28705 -14.23213 -14.09887 -13.84693 -13.61382 -13.55300 -13.09650 -12.72408 -12.60885 -12.40643 -12.22815 -12.09287 -11.72995 -11.43807 -11.21198 -11.13196 -11.09081 -11.02249 -11.01098 -10.89607 -10.71569 -10.43819 -10.29832 -9.90394 -9.63980 -9.46810 -8.92418 -8.83179 -8.63611 -8.44308 -7.38368 -5.82718 -3.21286 0.50986 1.39463 1.80918 2.30054 3.29995 3.32586 3.33954 3.40501 3.42375 4.24952 4.33597 4.43479 4.52548 4.54338 4.66970 4.72897 4.94684 4.95083 5.03619 5.10103 5.15301 5.21827 5.32030 5.35638 5.36574 5.46760 5.49092 5.61226 5.70420 5.71634 5.77068 5.79429 5.84177 5.86510 5.95679 6.00694 6.13675 6.21872 6.28007 6.35115 6.36481 6.59718 6.65195 6.72739 7.72834 7.93838 8.35767 8.39698 9.12248 9.83764 10.01699 11.34926 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.002976 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.010100 B = 9405.344335 C = 9909.724910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.881 3.119 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.093 0.907 9 N -0.713 5.713 10 C 0.132 3.868 11 C 0.148 3.852 12 N -0.708 5.708 13 C 0.586 3.414 14 O -0.535 6.535 15 C -0.255 4.255 16 C -0.054 4.054 17 C -0.117 4.117 18 C -0.197 4.197 19 S 0.192 5.808 20 C -0.046 4.046 21 C -0.112 4.112 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.053 4.053 25 C -0.179 4.179 26 C -0.190 4.190 27 H 0.261 0.739 28 H 0.364 0.636 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.395 0.605 32 H 0.150 0.850 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.328 -2.683 14.929 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.111 0.889 9 N -0.354 5.354 10 C 0.038 3.962 11 C 0.023 3.977 12 N -0.358 5.358 13 C 0.371 3.629 14 O -0.414 6.414 15 C -0.375 4.375 16 C -0.087 4.087 17 C -0.130 4.130 18 C -0.316 4.316 19 S 0.462 5.538 20 C -0.085 4.085 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.092 4.092 25 C -0.220 4.220 26 C -0.228 4.228 27 H 0.071 0.929 28 H 0.198 0.802 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.229 0.771 32 H 0.168 0.832 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.885 -2.487 13.818 26.002 hybrid contribution 0.306 0.841 0.985 1.331 sum 22.191 -1.646 14.803 26.726 Atomic orbital electron populations 1.69691 1.05093 1.25939 1.56727 1.24683 0.95206 0.97151 1.01619 0.86611 0.79384 0.85182 0.77756 1.21045 1.21624 1.20181 1.18980 0.79969 0.94849 1.43606 0.88897 1.42114 1.03843 1.01372 1.88086 1.20058 0.94511 0.90852 0.90758 1.21305 0.95547 0.94803 0.86080 1.45796 1.43649 1.37564 1.08760 1.16923 0.81716 0.82786 0.81477 1.90817 1.40849 1.29399 1.80333 1.24445 1.07937 1.05974 0.99187 1.20738 0.97241 0.99531 0.91212 1.19322 0.98685 0.97270 0.97721 1.24445 1.04970 1.03466 0.98730 1.83082 1.33925 1.30424 1.06372 1.20626 0.92496 0.94888 1.00468 1.21177 0.96781 0.99295 0.97820 1.20802 0.99406 0.97982 0.97331 1.21127 0.94037 0.97973 1.02104 1.20741 0.96787 1.01668 0.90037 1.23361 1.01200 0.97703 0.99694 1.23148 0.91392 1.03302 1.04989 0.92916 0.80178 0.91831 0.89516 0.77082 0.83249 0.90680 0.89752 0.91614 0.91312 0.92330 0.92296 0.91747 0.91600 0.90736 0.90624 0.89459 0.88322 0.89020 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.62 27.68 -169.99 -4.70 16.92 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.31 6.61 56.52 0.37 -5.94 16 7 C -0.24 -6.72 10.01 -15.06 -0.15 -6.87 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.71 -16.19 5.29 -47.23 -0.25 -16.43 16 10 C 0.13 2.44 2.16 -131.81 -0.28 2.15 16 11 C 0.15 2.73 5.72 -4.04 -0.02 2.71 16 12 N -0.71 -11.98 5.51 -61.65 -0.34 -12.32 16 13 C 0.59 10.37 7.78 -12.90 -0.10 10.27 16 14 O -0.53 -11.17 16.84 5.18 0.09 -11.08 16 15 C -0.26 -3.73 6.44 -36.93 -0.24 -3.97 16 16 C -0.05 -0.71 9.78 -40.21 -0.39 -1.10 16 17 C -0.12 -1.26 5.06 -104.90 -0.53 -1.79 16 18 C -0.20 -2.03 5.46 -34.90 -0.19 -2.22 16 19 S 0.19 2.24 22.11 -107.50 -2.38 -0.14 16 20 C -0.05 -0.35 5.87 -26.86 -0.16 -0.50 16 21 C -0.11 -0.73 5.60 -27.66 -0.15 -0.89 16 22 C -0.12 -0.72 5.14 -28.73 -0.15 -0.86 16 23 C -0.11 -0.79 5.56 -27.78 -0.15 -0.95 16 24 C -0.05 -0.43 5.81 -26.72 -0.16 -0.58 16 25 C -0.18 -2.94 10.11 -26.69 -0.27 -3.21 16 26 C -0.19 -2.81 10.10 -26.69 -0.27 -3.08 16 27 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 28 H 0.36 8.08 5.97 -40.82 -0.24 7.84 16 29 H 0.06 1.09 7.94 -51.93 -0.41 0.67 16 30 H 0.09 1.92 7.76 -51.93 -0.40 1.51 16 31 H 0.40 6.02 7.55 -40.82 -0.31 5.72 16 32 H 0.15 1.93 8.05 -52.48 -0.42 1.51 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.59 7.88 -51.93 -0.41 0.18 16 35 H 0.07 0.49 7.90 -51.94 -0.41 0.08 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 39 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 42 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 43 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 44 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -32.64 384.36 -11.54 -44.19 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -7.21 Total: 11.93 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -3.32 Total: -10.71 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.19 Total: -56.90 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.70 Total: 16.92 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.38 Total: -0.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.64 -11.54 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716700122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.798 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds