Wall clock time and date at job start Tue Mar 31 2020 17:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99633 * 2 1 4 4 O 1.21489 * 120.00109 * 359.97438 * 3 2 1 5 5 C 1.48344 * 119.99875 * 180.02562 * 3 2 1 6 6 C 1.39298 * 119.57194 * 179.97438 * 5 3 2 7 7 C 1.38444 * 119.18931 * 179.97438 * 6 5 3 8 8 C 1.39867 * 118.35833 * 0.02562 * 7 6 5 9 9 C 1.48012 * 120.46122 * 179.97438 * 8 7 6 10 10 O 1.21529 * 120.00197 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00085 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00378 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47453 * 180.02562 * 12 11 9 14 14 O 1.42901 * 113.28192 * 313.06542 * 13 12 11 15 15 C 1.53495 * 114.20885 * 179.97438 * 13 12 11 16 16 N 1.47063 * 87.98752 * 220.34588 * 15 13 12 17 17 C 1.36935 * 136.06032 * 207.08713 * 16 15 13 18 18 H 1.08002 * 119.99824 * 6.49422 * 17 16 15 19 19 C 1.38813 * 120.00278 * 186.49512 * 17 16 15 20 20 N 1.31620 * 119.99721 * 6.70578 * 19 17 16 21 21 Si 1.86796 * 120.00005 * 186.43238 * 19 17 16 22 22 H 1.48499 * 109.47369 * 84.98721 * 21 19 17 23 23 H 1.48500 * 109.47154 * 204.98480 * 21 19 17 24 24 H 1.48501 * 109.47145 * 324.99099 * 21 19 17 25 25 C 1.47068 * 87.88544 * 27.33896 * 16 15 13 26 26 C 1.39721 * 119.07499 * 0.27210 * 8 7 6 27 27 N 1.31415 * 120.71807 * 359.40654 * 26 8 7 28 28 H 1.09006 * 109.46612 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47488 * 299.99924 * 1 2 3 30 30 H 1.08997 * 109.47115 * 60.00893 * 1 2 3 31 31 H 0.96996 * 120.00148 * 179.97438 * 2 1 3 32 32 H 1.08001 * 120.40402 * 0.02562 * 6 5 3 33 33 H 1.08001 * 120.82163 * 179.97438 * 7 6 5 34 34 H 0.96998 * 119.99596 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.47237 * 59.99346 * 12 11 9 36 36 H 1.09005 * 109.46802 * 300.00431 * 12 11 9 37 37 H 0.96705 * 113.99953 * 46.93200 * 14 13 12 38 38 H 1.08999 * 113.47047 * 105.56358 * 15 13 12 39 39 H 1.09007 * 113.51565 * 335.13333 * 15 13 12 40 40 H 0.97002 * 119.99507 * 179.72842 * 20 19 17 41 41 H 1.09006 * 113.46436 * 87.43772 * 25 16 15 42 42 H 1.08994 * 113.47260 * 217.88053 * 25 16 15 43 43 H 1.08005 * 119.64307 * 179.72438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2193 -0.0005 5 6 3.6223 1.1673 -0.0006 6 6 4.3097 2.3789 -0.0011 7 6 5.6941 2.3697 -0.0011 8 6 6.3502 1.1345 -0.0011 9 6 7.8290 1.0703 -0.0017 10 8 8.4817 2.0955 -0.0017 11 7 8.4517 -0.1250 -0.0011 12 6 9.9153 -0.1885 -0.0011 13 6 10.3623 -1.6517 -0.0011 14 8 9.6701 -2.4538 0.9579 15 6 11.8851 -1.8446 -0.0017 16 7 11.6927 -2.9495 -0.9530 17 6 12.3645 -4.0969 -1.2806 18 1 13.2225 -4.4044 -0.7012 19 6 11.9427 -4.8649 -2.3573 20 7 10.9823 -4.4256 -3.1428 21 14 12.7433 -6.5183 -2.6957 22 1 12.0845 -7.5649 -1.8737 23 1 12.5966 -6.8540 -4.1348 24 1 14.1854 -6.4505 -2.3477 25 6 10.4645 -2.2767 -1.4022 26 6 5.5904 -0.0380 -0.0069 27 7 4.2772 0.0130 -0.0006 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.7692 3.3139 -0.0007 33 1 6.2536 3.2935 -0.0019 34 1 7.9307 -0.9432 0.0000 35 1 10.3006 0.3096 0.8886 36 1 10.3005 0.3088 -0.8914 37 1 8.7110 -2.3299 0.9553 38 1 12.2824 -2.1652 0.9613 39 1 12.4304 -0.9997 -0.4224 40 1 10.6903 -4.9605 -3.8975 41 1 10.6345 -1.5452 -2.1924 42 1 9.6515 -2.9653 -1.6323 43 1 6.0876 -0.9968 -0.0115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724482738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:31 Heat of formation + Delta-G solvation = -8.751370 kcal Electronic energy + Delta-G solvation = -27639.986047 eV Core-core repulsion = 23495.038393 eV Total energy + Delta-G solvation = -4144.947654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27253 -40.08945 -39.24168 -38.53654 -35.22687 -35.11910 -34.24237 -33.06791 -32.28266 -31.96061 -28.92145 -27.75086 -26.28854 -24.93698 -24.65872 -24.08650 -22.19345 -21.42819 -20.80745 -19.54176 -19.05084 -18.43537 -17.42585 -16.81394 -16.18598 -15.94973 -15.89679 -15.58875 -15.52103 -15.40568 -15.04187 -14.62927 -14.26271 -14.04547 -13.99446 -13.67194 -13.50379 -13.34454 -13.09294 -13.04460 -12.81515 -12.69848 -12.31543 -11.96695 -11.21567 -10.90309 -10.86826 -10.80075 -10.62062 -10.44244 -10.43894 -10.02397 -9.86709 -9.80134 -9.58080 -9.53476 -9.33106 -9.01346 -8.86467 -6.97018 -5.84812 -3.15252 -0.17346 0.70327 2.02025 2.64377 2.77474 2.82382 3.36927 3.41427 3.42993 3.46278 3.55668 4.22419 4.24749 4.36790 4.38632 4.41019 4.49897 4.68110 4.81327 4.87519 5.07643 5.08326 5.14836 5.24263 5.34739 5.48052 5.50680 5.55624 5.63907 5.89108 5.89695 5.94906 6.12185 6.30481 6.42240 6.46148 6.89038 6.92670 7.00269 7.17317 7.21661 7.40686 7.69825 7.86981 7.89384 8.01698 8.96721 9.63373 10.54114 11.34072 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002282 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.132679 B =12266.214033 C =13569.244884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.714 5.714 3 C 0.571 3.429 4 O -0.529 6.529 5 C 0.094 3.906 6 C -0.117 4.117 7 C -0.021 4.021 8 C -0.159 4.159 9 C 0.562 3.438 10 O -0.528 6.528 11 N -0.715 5.715 12 C 0.107 3.893 13 C 0.054 3.946 14 O -0.520 6.520 15 C 0.134 3.866 16 N -0.599 5.599 17 C -0.215 4.215 18 H 0.083 0.917 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.915 3.085 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.144 3.856 26 C 0.135 3.865 27 N -0.460 5.460 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.415 0.585 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.397 0.603 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.358 0.642 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.254 0.746 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 10.777 7.355 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.366 5.366 3 C 0.355 3.645 4 O -0.405 6.405 5 C -0.044 4.044 6 C -0.137 4.137 7 C -0.047 4.047 8 C -0.164 4.164 9 C 0.347 3.653 10 O -0.405 6.405 11 N -0.368 5.368 12 C -0.017 4.017 13 C 0.011 3.989 14 O -0.323 6.323 15 C 0.007 3.993 16 N -0.324 5.324 17 C -0.342 4.342 18 H 0.100 0.900 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.745 3.255 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.017 3.983 26 C -0.026 4.026 27 N -0.172 5.172 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.233 0.767 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.204 0.796 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.896 10.946 7.284 22.207 hybrid contribution 0.349 -0.788 -0.553 1.024 sum -17.548 10.158 6.732 21.364 Atomic orbital electron populations 1.21635 0.78866 1.02770 1.02581 1.45640 1.07947 1.09097 1.73900 1.17912 0.85672 0.84166 0.76728 1.90800 1.68737 1.31293 1.49681 1.21286 0.94300 0.89864 0.98919 1.22133 0.94162 0.99666 0.97777 1.21811 0.93574 0.98440 0.90906 1.21261 0.94903 0.95587 1.04667 1.17956 0.86428 0.83916 0.76986 1.90801 1.66599 1.33795 1.49334 1.45858 1.08538 1.07851 1.74548 1.22040 0.78166 0.98123 1.03392 1.23532 0.95933 0.86250 0.93176 1.86672 1.21502 1.65954 1.58178 1.22378 0.89847 0.91926 0.95152 1.45355 1.25590 1.19259 1.42158 1.18899 1.09786 0.95561 1.09990 0.89954 1.24815 0.99407 0.99430 0.96755 1.69831 1.31503 1.37697 1.17762 0.86094 0.78710 0.83568 0.77102 1.21392 1.21648 1.20632 1.22695 0.91586 0.93743 0.90271 1.22986 0.88834 0.97930 0.92827 1.67524 1.10176 1.28193 1.11266 0.90159 0.91890 0.91859 0.74925 0.82591 0.82462 0.76667 0.90550 0.89690 0.79565 0.92943 0.93261 0.93597 0.94376 0.91628 0.81396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.85 0.64 1.11 16 2 N -0.71 -5.35 5.70 -67.88 -0.39 -5.74 16 3 C 0.57 5.79 7.82 -12.10 -0.09 5.69 16 4 O -0.53 -6.74 16.31 5.38 0.09 -6.65 16 5 C 0.09 0.91 6.75 -82.93 -0.56 0.35 16 6 C -0.12 -1.04 9.62 -39.11 -0.38 -1.41 16 7 C -0.02 -0.19 9.71 -38.90 -0.38 -0.57 16 8 C -0.16 -1.55 5.90 -104.73 -0.62 -2.16 16 9 C 0.56 6.73 7.79 -12.25 -0.10 6.64 16 10 O -0.53 -8.07 16.41 5.34 0.09 -7.98 16 11 N -0.72 -7.95 5.30 -61.20 -0.32 -8.27 16 12 C 0.11 1.46 5.42 -4.05 -0.02 1.43 16 13 C 0.05 0.91 1.74 -89.97 -0.16 0.76 16 14 O -0.52 -8.64 13.56 -35.23 -0.48 -9.11 16 15 C 0.13 2.65 8.10 -8.51 -0.07 2.58 16 16 N -0.60 -15.03 3.76 -184.58 -0.69 -15.73 16 17 C -0.22 -5.99 10.73 -15.06 -0.16 -6.15 16 18 H 0.08 2.22 7.84 -52.49 -0.41 1.80 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -26.81 11.81 55.49 0.66 -26.16 16 21 Si 0.92 21.91 29.56 -169.99 -5.02 16.89 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.14 3.13 6.66 -8.37 -0.06 3.07 16 26 C 0.14 1.14 10.71 -17.18 -0.18 0.96 16 27 N -0.46 -4.19 9.52 -9.48 -0.09 -4.28 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.41 2.54 8.15 -40.82 -0.33 2.21 16 32 H 0.16 1.22 7.63 -52.49 -0.40 0.82 16 33 H 0.16 1.29 7.73 -52.49 -0.41 0.89 16 34 H 0.40 3.47 5.01 -40.82 -0.20 3.27 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 37 H 0.36 4.13 7.20 45.56 0.33 4.46 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.04 0.85 7.93 -51.93 -0.41 0.44 16 42 H 0.07 1.57 7.58 -51.93 -0.39 1.18 16 43 H 0.17 0.99 6.42 -52.48 -0.34 0.65 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -36.42 370.90 -7.45 -43.87 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.65 Total: 5.59 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -2.22 Total: 11.99 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.84 Total: -60.18 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.30 Total: -23.74 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.42 -7.45 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724482738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.114 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds