Wall clock time and date at job start Tue Mar 31 2020 17:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99633 * 2 1 4 4 O 1.21489 * 120.00109 * 359.97438 * 3 2 1 5 5 C 1.48344 * 119.99875 * 180.02562 * 3 2 1 6 6 C 1.39298 * 119.57194 * 179.97438 * 5 3 2 7 7 C 1.38444 * 119.18931 * 179.97438 * 6 5 3 8 8 C 1.39867 * 118.35833 * 0.02562 * 7 6 5 9 9 C 1.48012 * 120.46122 * 179.97438 * 8 7 6 10 10 O 1.21529 * 120.00197 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00085 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00378 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47453 * 180.02562 * 12 11 9 14 14 O 1.42901 * 113.28192 * 313.06542 * 13 12 11 15 15 C 1.53495 * 114.20885 * 179.97438 * 13 12 11 16 16 N 1.47063 * 87.98752 * 220.34588 * 15 13 12 17 17 C 1.36935 * 136.06032 * 207.08713 * 16 15 13 18 18 H 1.08002 * 119.99824 * 6.49422 * 17 16 15 19 19 C 1.38813 * 120.00278 * 186.49512 * 17 16 15 20 20 N 1.31620 * 119.99721 * 6.70578 * 19 17 16 21 21 Si 1.86796 * 120.00005 * 186.43238 * 19 17 16 22 22 H 1.48499 * 109.47369 * 84.98721 * 21 19 17 23 23 H 1.48500 * 109.47154 * 204.98480 * 21 19 17 24 24 H 1.48501 * 109.47145 * 324.99099 * 21 19 17 25 25 C 1.47068 * 87.88544 * 27.33896 * 16 15 13 26 26 C 1.39721 * 119.07499 * 0.27210 * 8 7 6 27 27 N 1.31415 * 120.71807 * 359.40654 * 26 8 7 28 28 H 1.09006 * 109.46612 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47488 * 299.99924 * 1 2 3 30 30 H 1.08997 * 109.47115 * 60.00893 * 1 2 3 31 31 H 0.96996 * 120.00148 * 179.97438 * 2 1 3 32 32 H 1.08001 * 120.40402 * 0.02562 * 6 5 3 33 33 H 1.08001 * 120.82163 * 179.97438 * 7 6 5 34 34 H 0.96998 * 119.99596 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.47237 * 59.99346 * 12 11 9 36 36 H 1.09005 * 109.46802 * 300.00431 * 12 11 9 37 37 H 0.96705 * 113.99953 * 46.93200 * 14 13 12 38 38 H 1.08999 * 113.47047 * 105.56358 * 15 13 12 39 39 H 1.09007 * 113.51565 * 335.13333 * 15 13 12 40 40 H 0.97002 * 119.99507 * 179.72842 * 20 19 17 41 41 H 1.09006 * 113.46436 * 87.43772 * 25 16 15 42 42 H 1.08994 * 113.47260 * 217.88053 * 25 16 15 43 43 H 1.08005 * 119.64307 * 179.72438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2193 -0.0005 5 6 3.6223 1.1673 -0.0006 6 6 4.3097 2.3789 -0.0011 7 6 5.6941 2.3697 -0.0011 8 6 6.3502 1.1345 -0.0011 9 6 7.8290 1.0703 -0.0017 10 8 8.4817 2.0955 -0.0017 11 7 8.4517 -0.1250 -0.0011 12 6 9.9153 -0.1885 -0.0011 13 6 10.3623 -1.6517 -0.0011 14 8 9.6701 -2.4538 0.9579 15 6 11.8851 -1.8446 -0.0017 16 7 11.6927 -2.9495 -0.9530 17 6 12.3645 -4.0969 -1.2806 18 1 13.2225 -4.4044 -0.7012 19 6 11.9427 -4.8649 -2.3573 20 7 10.9823 -4.4256 -3.1428 21 14 12.7433 -6.5183 -2.6957 22 1 12.0845 -7.5649 -1.8737 23 1 12.5966 -6.8540 -4.1348 24 1 14.1854 -6.4505 -2.3477 25 6 10.4645 -2.2767 -1.4022 26 6 5.5904 -0.0380 -0.0069 27 7 4.2772 0.0130 -0.0006 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.7692 3.3139 -0.0007 33 1 6.2536 3.2935 -0.0019 34 1 7.9307 -0.9432 0.0000 35 1 10.3006 0.3096 0.8886 36 1 10.3005 0.3088 -0.8914 37 1 8.7110 -2.3299 0.9553 38 1 12.2824 -2.1652 0.9613 39 1 12.4304 -0.9997 -0.4224 40 1 10.6903 -4.9605 -3.8975 41 1 10.6345 -1.5452 -2.1924 42 1 9.6515 -2.9653 -1.6323 43 1 6.0876 -0.9968 -0.0115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724482738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:30 Heat of formation + Delta-G solvation = -39.809325 kcal Electronic energy + Delta-G solvation = -27641.332821 eV Core-core repulsion = 23495.038393 eV Total energy + Delta-G solvation = -4146.294428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05640 -41.14347 -40.39027 -39.56186 -36.65136 -35.81282 -35.41129 -34.09962 -33.79217 -32.90350 -30.36271 -28.65309 -27.63199 -26.54273 -25.61687 -24.79470 -23.79900 -22.30830 -21.65102 -21.05679 -19.85740 -19.35346 -18.68915 -18.19460 -17.33453 -17.10667 -16.77435 -16.66216 -16.39225 -16.34536 -16.13835 -15.82734 -15.65254 -15.27606 -15.06365 -14.84447 -14.55215 -14.41560 -14.23969 -13.89080 -13.81329 -13.79628 -13.46606 -13.09965 -13.04354 -12.78898 -12.51984 -12.24589 -11.82481 -11.64172 -11.51071 -11.26183 -11.16690 -10.92338 -10.72646 -10.68891 -10.55792 -10.24592 -10.11835 -8.94286 -7.93934 -5.24567 -0.93589 0.01846 1.21996 1.46267 1.48638 1.56159 1.84359 1.92108 2.01243 2.46711 2.71232 2.87930 3.04837 3.29923 3.33074 3.44667 3.57309 3.59650 3.71007 3.78120 3.90169 3.96397 4.38929 4.43433 4.51900 4.61972 4.69408 4.74422 4.79528 4.81149 4.86110 4.94150 4.94915 5.15365 5.16251 5.25728 5.29330 5.30258 5.46933 5.89843 6.21593 6.27674 6.54228 6.82186 6.90000 6.99203 7.01749 7.57871 8.57141 9.24692 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002282 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.132679 B =12266.214033 C =13569.244884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.704 5.704 3 C 0.565 3.435 4 O -0.563 6.563 5 C 0.087 3.913 6 C -0.117 4.117 7 C -0.018 4.018 8 C -0.166 4.166 9 C 0.568 3.432 10 O -0.563 6.563 11 N -0.706 5.706 12 C 0.122 3.878 13 C 0.094 3.906 14 O -0.534 6.534 15 C 0.126 3.874 16 N -0.635 5.635 17 C -0.228 4.228 18 H 0.083 0.917 19 C -0.065 4.065 20 N -0.951 5.951 21 Si 0.979 3.021 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.141 3.859 26 C 0.141 3.859 27 N -0.462 5.462 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.422 0.578 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.410 0.590 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.382 0.618 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.249 0.751 41 H 0.030 0.970 42 H 0.037 0.963 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.679 10.427 8.329 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.355 5.355 3 C 0.350 3.650 4 O -0.441 6.441 5 C -0.050 4.050 6 C -0.138 4.138 7 C -0.044 4.044 8 C -0.171 4.171 9 C 0.355 3.645 10 O -0.442 6.442 11 N -0.360 5.360 12 C -0.003 4.003 13 C 0.051 3.949 14 O -0.341 6.341 15 C 0.000 4.000 16 N -0.361 5.361 17 C -0.356 4.356 18 H 0.100 0.900 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.807 3.193 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.015 3.985 26 C -0.020 4.020 27 N -0.173 5.173 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.259 0.741 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.248 0.752 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -18.490 10.570 8.294 22.856 hybrid contribution 0.477 -0.669 -0.807 1.152 sum -18.012 9.902 7.487 21.875 Atomic orbital electron populations 1.21819 0.77610 1.04728 1.02116 1.45697 1.08863 1.08669 1.72272 1.18063 0.85938 0.84402 0.76624 1.90780 1.69332 1.32431 1.51582 1.21376 0.94312 0.90359 0.98980 1.22212 0.94064 0.99903 0.97576 1.21918 0.93637 0.98645 0.90242 1.21110 0.93535 0.96397 1.06086 1.18152 0.87117 0.83315 0.75953 1.90791 1.67471 1.34920 1.51018 1.45692 1.07607 1.08464 1.74239 1.21729 0.79616 0.95152 1.03827 1.22872 0.94451 0.87709 0.89833 1.86623 1.23728 1.66296 1.57409 1.22619 0.92258 0.90920 0.94160 1.45726 1.26844 1.20074 1.43416 1.19261 1.09704 0.96873 1.09744 0.89954 1.25623 1.00431 1.02835 0.96974 1.69993 1.33020 1.38790 1.18194 0.85085 0.78301 0.79434 0.76435 1.21116 1.22022 1.19488 1.22713 0.89768 0.93043 0.92983 1.23361 0.88568 0.98538 0.91542 1.67567 1.10344 1.27843 1.11531 0.87023 0.92264 0.92408 0.74050 0.81865 0.81858 0.75175 0.89282 0.90174 0.76817 0.92681 0.91277 0.94208 0.95282 0.94413 0.78867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.70 127.77 1.37 2.14 16 2 N -0.70 -9.60 5.70 -486.99 -2.78 -12.38 16 3 C 0.57 11.02 7.82 86.93 0.68 11.70 16 4 O -0.56 -14.23 16.31 -3.68 -0.06 -14.29 16 5 C 0.09 1.58 6.75 41.96 0.28 1.87 16 6 C -0.12 -1.96 9.62 22.57 0.22 -1.74 16 7 C -0.02 -0.30 9.71 22.71 0.22 -0.08 16 8 C -0.17 -2.93 5.90 -19.93 -0.12 -3.05 16 9 C 0.57 12.54 7.79 86.83 0.68 13.22 16 10 O -0.56 -16.40 16.41 -3.81 -0.06 -16.46 16 11 N -0.71 -14.07 5.30 -465.81 -2.47 -16.54 16 12 C 0.12 3.04 5.42 86.38 0.47 3.51 16 13 C 0.09 3.04 1.74 -10.37 -0.02 3.02 16 14 O -0.53 -16.55 13.56 -148.98 -2.02 -18.57 16 15 C 0.13 4.84 8.10 83.18 0.67 5.51 16 16 N -0.64 -31.89 3.76 -738.37 -2.78 -34.67 16 17 C -0.23 -12.73 10.73 84.03 0.90 -11.83 16 18 H 0.08 4.44 7.84 -2.91 -0.02 4.41 16 19 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 20 N -0.95 -56.31 11.81 21.65 0.26 -56.05 16 21 Si 0.98 45.30 29.56 68.60 2.03 47.33 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 C 0.14 6.15 6.66 83.27 0.55 6.71 16 26 C 0.14 2.06 10.71 85.11 0.91 2.97 16 27 N -0.46 -7.54 9.52 -183.90 -1.75 -9.29 16 28 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.42 4.42 8.15 -92.71 -0.76 3.66 16 32 H 0.16 2.45 7.63 -2.91 -0.02 2.43 16 33 H 0.16 2.52 7.73 -2.91 -0.02 2.50 16 34 H 0.41 6.03 5.01 -92.71 -0.46 5.57 16 35 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.08 2.16 7.89 -2.38 -0.02 2.14 16 37 H 0.38 7.68 7.20 -74.05 -0.53 7.15 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.40 8.11 -2.38 -0.02 2.38 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.03 1.32 7.93 -2.38 -0.02 1.30 16 42 H 0.04 1.83 7.58 -2.39 -0.02 1.81 16 43 H 0.19 1.67 6.42 -2.91 -0.02 1.65 16 Total: -1.00 -79.17 370.90 -3.01 -82.18 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.66 Total: 18.02 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 7.29 Total: 30.72 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -9.52 Total: -128.93 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -2.14 Total: -49.33 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -79.17 -3.01 -82.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724482738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.368 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds