Wall clock time and date at job start Tue Mar 31 2020 17:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42098 * 108.57884 * 2 1 4 4 O 1.42092 * 108.58005 * 228.97233 * 2 1 3 5 5 C 1.81404 * 101.92031 * 114.48764 * 2 1 3 6 6 C 1.53000 * 109.47231 * 180.02562 * 5 2 1 7 7 C 1.50694 * 109.47138 * 179.97438 * 6 5 2 8 8 O 1.21278 * 120.00264 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99997 * 179.97438 * 7 6 5 10 10 C 1.46922 * 120.62736 * 0.02842 * 9 7 6 11 11 C 1.53189 * 108.77647 * 126.36868 * 10 9 7 12 12 C 1.53109 * 109.32997 * 54.63033 * 11 10 9 13 13 C 1.53041 * 109.50376 * 298.65619 * 12 11 10 14 14 C 1.53003 * 109.49836 * 181.31660 * 13 12 11 15 15 O 1.42906 * 109.46869 * 65.06573 * 14 13 12 16 16 N 1.46496 * 109.49771 * 301.38306 * 13 12 11 17 17 C 1.36939 * 120.00077 * 299.93275 * 16 13 12 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 13 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 13 20 20 N 1.31619 * 119.99884 * 359.72042 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.72678 * 19 17 16 22 22 H 1.48490 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 119.99875 * 21 19 17 24 24 H 1.48504 * 109.46636 * 239.99434 * 21 19 17 25 25 C 1.46924 * 120.62998 * 179.97438 * 9 7 6 26 26 H 1.08999 * 109.47790 * 305.51061 * 1 2 3 27 27 H 1.08998 * 109.47105 * 65.51531 * 1 2 3 28 28 H 1.09005 * 109.47425 * 185.51059 * 1 2 3 29 29 H 1.08997 * 109.47233 * 59.99991 * 5 2 1 30 30 H 1.09002 * 109.47157 * 300.00135 * 5 2 1 31 31 H 1.08997 * 109.47314 * 59.99679 * 6 5 2 32 32 H 1.09002 * 109.46864 * 299.99952 * 6 5 2 33 33 H 1.09003 * 109.58561 * 246.15048 * 10 9 7 34 34 H 1.08996 * 109.59020 * 6.43209 * 10 9 7 35 35 H 1.08999 * 109.50196 * 174.58428 * 11 10 9 36 36 H 1.09000 * 109.49556 * 294.68367 * 11 10 9 37 37 H 1.09005 * 109.50513 * 178.63431 * 12 11 10 38 38 H 1.08996 * 109.45440 * 58.65619 * 12 11 10 39 39 H 1.08993 * 109.47112 * 185.06888 * 14 13 12 40 40 H 1.08999 * 109.47225 * 305.07146 * 14 13 12 41 41 H 0.96702 * 113.99405 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00009 * 119.93892 * 16 13 12 43 43 H 0.97000 * 119.99517 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.58357 * 113.84259 * 25 9 7 45 45 H 1.09006 * 109.70533 * 353.49570 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7357 1.6153 6 6 3.7054 -0.8185 1.7985 7 6 4.0166 -1.4290 3.1406 8 8 3.1142 -1.7654 3.8778 9 7 5.2979 -1.6023 3.5213 10 6 6.4018 -1.2003 2.6391 11 6 7.3397 -0.2704 3.4152 12 6 7.7865 -0.9630 4.7055 13 6 6.5638 -1.2551 5.5784 14 6 7.0135 -1.9176 6.8821 15 8 7.8034 -0.9962 7.6368 16 7 5.8685 -0.0017 5.8812 17 6 6.5207 0.9982 6.5520 18 1 7.5462 0.8611 6.8617 19 6 5.8618 2.1857 6.8395 20 7 4.6118 2.3526 6.4624 21 14 6.7491 3.5467 7.7612 22 1 8.1353 3.1132 8.0702 23 1 6.7884 4.7700 6.9204 24 1 6.0286 3.8387 9.0265 25 6 5.6171 -2.1957 4.8270 26 1 -0.3634 0.5969 0.8365 27 1 -0.3633 0.4259 -0.9352 28 1 -0.3634 -1.0229 0.0987 29 1 1.7610 -1.7370 1.6665 30 1 1.7609 -0.1171 2.4043 31 1 4.1327 0.1829 1.7474 32 1 4.1334 -1.4368 1.0095 33 1 6.9504 -2.0844 2.3142 34 1 6.0030 -0.6779 1.7696 35 1 8.2129 -0.0417 2.8041 36 1 6.8151 0.6528 3.6610 37 1 8.4732 -0.3135 5.2483 38 1 8.2893 -1.8984 4.4601 39 1 6.1382 -2.2069 7.4635 40 1 7.6070 -2.8029 6.6540 41 1 8.1239 -1.3498 8.4778 42 1 4.9462 0.1199 5.6066 43 1 4.1515 3.1826 6.6629 44 1 6.1015 -3.1612 4.6809 45 1 4.7018 -2.3298 5.4035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724903876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:11 Heat of formation + Delta-G solvation = -130.055012 kcal Electronic energy + Delta-G solvation = -28632.770485 eV Core-core repulsion = 24585.713910 eV Total energy + Delta-G solvation = -4047.056575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.10614 -37.97286 -37.10806 -36.16872 -35.78011 -33.89598 -33.17982 -31.96318 -31.27789 -29.85728 -28.73200 -26.23402 -25.39606 -23.94219 -23.31511 -21.77372 -19.30134 -19.02585 -18.32689 -17.49257 -17.31753 -16.45294 -16.40215 -16.24800 -15.84578 -15.46099 -15.39066 -14.79944 -14.14450 -14.06437 -13.82390 -13.64651 -13.43371 -13.38931 -13.28827 -13.02885 -12.79442 -12.51123 -12.25613 -12.20736 -12.11512 -11.97196 -11.86021 -11.51107 -11.24524 -11.22983 -10.79005 -10.75814 -10.69796 -10.40088 -10.35285 -10.08896 -9.86391 -9.56980 -9.48532 -8.97738 -8.74758 -8.28330 -6.84452 -5.59039 -2.86063 -0.19746 2.55580 2.84307 3.14934 3.50689 3.52770 3.58914 3.61368 3.85813 4.36058 4.54817 4.57556 4.65791 4.73321 4.82538 4.88964 5.08550 5.27029 5.33299 5.39942 5.40758 5.49153 5.54425 5.64113 5.69991 5.75306 5.80085 5.87109 5.91710 6.03848 6.10811 6.13057 6.34672 6.51880 6.73002 6.81944 6.97644 7.08651 7.65268 8.12255 8.35603 8.41054 8.59255 9.71175 10.22051 10.58602 11.63998 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.003749 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.519125 B = 7466.833498 C = 8583.051296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.421 3.579 3 O -0.935 6.935 4 O -0.944 6.944 5 C -0.592 4.592 6 C -0.132 4.132 7 C 0.528 3.472 8 O -0.539 6.539 9 N -0.596 5.596 10 C 0.107 3.893 11 C -0.131 4.131 12 C -0.117 4.117 13 C 0.188 3.812 14 C 0.074 3.926 15 O -0.534 6.534 16 N -0.704 5.704 17 C -0.204 4.204 18 H 0.093 0.907 19 C -0.025 4.025 20 N -0.941 5.941 21 Si 0.902 3.098 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.297 1.297 25 C 0.116 3.884 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.024 0.976 41 H 0.351 0.649 42 H 0.383 0.617 43 H 0.250 0.750 44 H 0.065 0.935 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -11.114 -11.684 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.604 3.396 3 O -0.932 6.932 4 O -0.941 6.941 5 C -0.722 4.722 6 C -0.172 4.172 7 C 0.314 3.686 8 O -0.416 6.416 9 N -0.329 5.329 10 C -0.016 4.016 11 C -0.169 4.169 12 C -0.157 4.157 13 C 0.094 3.906 14 C -0.007 4.007 15 O -0.337 6.337 16 N -0.345 5.345 17 C -0.335 4.335 18 H 0.111 0.889 19 C -0.219 4.219 20 N -0.591 5.591 21 Si 0.735 3.265 22 H -0.207 1.207 23 H -0.225 1.225 24 H -0.225 1.225 25 C -0.007 4.007 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.195 0.805 42 H 0.218 0.782 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.417 -10.484 -12.395 16.413 hybrid contribution -0.341 0.241 1.679 1.730 sum -2.758 -10.243 -10.716 15.079 Atomic orbital electron populations 1.30248 1.26817 1.11621 1.11806 1.07801 0.78397 0.75872 0.77578 1.93631 1.78847 1.34313 1.86423 1.93586 1.79131 1.67146 1.54223 1.30122 1.04173 1.14921 1.22935 1.21354 0.93218 1.04677 0.97998 1.20053 0.82370 0.78323 0.87837 1.90681 1.45116 1.51137 1.54714 1.47825 1.05323 1.61576 1.18171 1.21833 0.88500 0.98546 0.92748 1.21837 0.98375 1.00394 0.96255 1.21886 0.98791 0.99032 0.95967 1.19952 0.91471 0.88326 0.90816 1.22712 0.93068 0.90598 0.94344 1.86936 1.71160 1.40884 1.34702 1.42412 1.13290 1.11516 1.67259 1.19606 0.96910 0.91897 1.25101 0.88924 1.24738 0.96210 0.98433 1.02519 1.69693 1.10335 1.26068 1.53000 0.86162 0.78670 0.82477 0.79221 1.20664 1.22461 1.22484 1.21694 1.00515 0.94847 0.83668 0.85062 0.85374 0.85345 0.84441 0.83805 0.86889 0.87628 0.91742 0.90288 0.92020 0.89136 0.90694 0.94015 0.94616 0.95838 0.80464 0.78233 0.94055 0.91652 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.74 10.62 101.05 1.07 -2.67 16 2 S 2.42 22.17 5.36 -107.50 -0.58 21.60 16 3 O -0.93 -12.63 18.10 -57.83 -1.05 -13.68 16 4 O -0.94 -11.26 18.10 -57.83 -1.05 -12.31 16 5 C -0.59 -5.99 5.09 37.16 0.19 -5.80 16 6 C -0.13 -1.64 4.05 -27.89 -0.11 -1.75 16 7 C 0.53 8.64 7.70 -10.98 -0.08 8.55 16 8 O -0.54 -10.50 15.40 5.56 0.09 -10.41 16 9 N -0.60 -9.35 2.87 -172.80 -0.50 -9.85 16 10 C 0.11 1.40 6.34 -3.71 -0.02 1.37 16 11 C -0.13 -2.06 5.93 -26.58 -0.16 -2.22 16 12 C -0.12 -1.98 4.43 -26.65 -0.12 -2.10 16 13 C 0.19 3.50 0.68 -131.72 -0.09 3.41 16 14 C 0.07 1.28 6.09 37.16 0.23 1.50 16 15 O -0.53 -10.02 9.91 -35.23 -0.35 -10.37 16 16 N -0.70 -16.96 4.22 -47.14 -0.20 -17.15 16 17 C -0.20 -5.50 8.14 -15.06 -0.12 -5.62 16 18 H 0.09 2.51 5.29 -52.49 -0.28 2.23 16 19 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 20 N -0.94 -28.85 13.06 55.49 0.72 -28.12 16 21 Si 0.90 23.07 29.55 -169.99 -5.02 18.05 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 24 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 25 C 0.12 1.90 5.13 -3.74 -0.02 1.89 16 26 H 0.13 0.63 8.14 -51.92 -0.42 0.20 16 27 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.14 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.14 1.51 8.10 -51.92 -0.42 1.09 16 31 H 0.11 1.41 7.69 -51.93 -0.40 1.01 16 32 H 0.11 1.02 7.94 -51.93 -0.41 0.61 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.88 5.93 -51.93 -0.31 0.58 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.81 7.53 -51.93 -0.39 1.42 16 37 H 0.07 1.46 6.98 -51.93 -0.36 1.10 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.35 4.87 9.12 45.56 0.42 5.28 16 42 H 0.38 10.33 7.65 -40.82 -0.31 10.02 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.73 7.01 -51.93 -0.36 1.37 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -39.73 370.53 -7.87 -47.60 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -6.19 Total: 13.31 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 0.66 Total: -4.25 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.03 Total: -55.13 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -2.36 Total: -46.77 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Atomic # 16 Polarization: 22.17 SS G_CDS: -0.58 Total: 21.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.73 -7.87 -47.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724903876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.451 kcal (2) G-P(sol) polarization free energy of solvation -39.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds