Wall clock time and date at job start Tue Mar 31 2020 17:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42098 * 108.57884 * 2 1 4 4 O 1.42092 * 108.58005 * 228.97233 * 2 1 3 5 5 C 1.81404 * 101.92031 * 114.48764 * 2 1 3 6 6 C 1.53000 * 109.47231 * 180.02562 * 5 2 1 7 7 C 1.50694 * 109.47138 * 179.97438 * 6 5 2 8 8 O 1.21278 * 120.00264 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99997 * 179.97438 * 7 6 5 10 10 C 1.46922 * 120.62736 * 0.02842 * 9 7 6 11 11 C 1.53189 * 108.77647 * 126.36868 * 10 9 7 12 12 C 1.53109 * 109.32997 * 54.63033 * 11 10 9 13 13 C 1.53041 * 109.50376 * 298.65619 * 12 11 10 14 14 C 1.53003 * 109.49836 * 181.31660 * 13 12 11 15 15 O 1.42906 * 109.46869 * 65.06573 * 14 13 12 16 16 N 1.46496 * 109.49771 * 301.38306 * 13 12 11 17 17 C 1.36939 * 120.00077 * 299.93275 * 16 13 12 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 13 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 13 20 20 N 1.31619 * 119.99884 * 359.72042 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.72678 * 19 17 16 22 22 H 1.48490 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 119.99875 * 21 19 17 24 24 H 1.48504 * 109.46636 * 239.99434 * 21 19 17 25 25 C 1.46924 * 120.62998 * 179.97438 * 9 7 6 26 26 H 1.08999 * 109.47790 * 305.51061 * 1 2 3 27 27 H 1.08998 * 109.47105 * 65.51531 * 1 2 3 28 28 H 1.09005 * 109.47425 * 185.51059 * 1 2 3 29 29 H 1.08997 * 109.47233 * 59.99991 * 5 2 1 30 30 H 1.09002 * 109.47157 * 300.00135 * 5 2 1 31 31 H 1.08997 * 109.47314 * 59.99679 * 6 5 2 32 32 H 1.09002 * 109.46864 * 299.99952 * 6 5 2 33 33 H 1.09003 * 109.58561 * 246.15048 * 10 9 7 34 34 H 1.08996 * 109.59020 * 6.43209 * 10 9 7 35 35 H 1.08999 * 109.50196 * 174.58428 * 11 10 9 36 36 H 1.09000 * 109.49556 * 294.68367 * 11 10 9 37 37 H 1.09005 * 109.50513 * 178.63431 * 12 11 10 38 38 H 1.08996 * 109.45440 * 58.65619 * 12 11 10 39 39 H 1.08993 * 109.47112 * 185.06888 * 14 13 12 40 40 H 1.08999 * 109.47225 * 305.07146 * 14 13 12 41 41 H 0.96702 * 113.99405 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00009 * 119.93892 * 16 13 12 43 43 H 0.97000 * 119.99517 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.58357 * 113.84259 * 25 9 7 45 45 H 1.09006 * 109.70533 * 353.49570 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7357 1.6153 6 6 3.7054 -0.8185 1.7985 7 6 4.0166 -1.4290 3.1406 8 8 3.1142 -1.7654 3.8778 9 7 5.2979 -1.6023 3.5213 10 6 6.4018 -1.2003 2.6391 11 6 7.3397 -0.2704 3.4152 12 6 7.7865 -0.9630 4.7055 13 6 6.5638 -1.2551 5.5784 14 6 7.0135 -1.9176 6.8821 15 8 7.8034 -0.9962 7.6368 16 7 5.8685 -0.0017 5.8812 17 6 6.5207 0.9982 6.5520 18 1 7.5462 0.8611 6.8617 19 6 5.8618 2.1857 6.8395 20 7 4.6118 2.3526 6.4624 21 14 6.7491 3.5467 7.7612 22 1 8.1353 3.1132 8.0702 23 1 6.7884 4.7700 6.9204 24 1 6.0286 3.8387 9.0265 25 6 5.6171 -2.1957 4.8270 26 1 -0.3634 0.5969 0.8365 27 1 -0.3633 0.4259 -0.9352 28 1 -0.3634 -1.0229 0.0987 29 1 1.7610 -1.7370 1.6665 30 1 1.7609 -0.1171 2.4043 31 1 4.1327 0.1829 1.7474 32 1 4.1334 -1.4368 1.0095 33 1 6.9504 -2.0844 2.3142 34 1 6.0030 -0.6779 1.7696 35 1 8.2129 -0.0417 2.8041 36 1 6.8151 0.6528 3.6610 37 1 8.4732 -0.3135 5.2483 38 1 8.2893 -1.8984 4.4601 39 1 6.1382 -2.2069 7.4635 40 1 7.6070 -2.8029 6.6540 41 1 8.1239 -1.3498 8.4778 42 1 4.9462 0.1199 5.6066 43 1 4.1515 3.1826 6.6629 44 1 6.1015 -3.1612 4.6809 45 1 4.7018 -2.3298 5.4035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724903876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:09 Heat of formation + Delta-G solvation = -164.706272 kcal Electronic energy + Delta-G solvation = -28634.273076 eV Core-core repulsion = 24585.713910 eV Total energy + Delta-G solvation = -4048.559166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.38441 -39.37895 -37.97448 -37.14301 -37.04020 -35.54754 -34.33364 -33.54768 -32.66210 -30.60532 -30.33651 -27.40968 -26.65504 -25.66231 -24.75802 -23.06707 -20.63483 -19.81629 -19.67744 -19.17858 -18.51756 -17.90416 -17.32854 -17.26877 -16.81855 -16.64327 -16.51616 -16.32043 -15.77763 -15.45923 -15.30077 -14.80422 -14.78619 -14.57056 -14.10567 -13.91956 -13.89416 -13.66877 -13.47832 -13.40382 -13.27475 -13.10380 -13.00867 -12.88047 -12.68626 -12.60622 -12.44209 -12.03155 -11.96130 -11.78488 -11.69889 -11.55624 -11.49956 -11.26994 -10.88220 -10.68277 -10.53625 -9.54035 -8.85960 -7.77596 -5.01829 -0.91942 1.46441 1.47309 1.57276 1.60122 1.86758 2.03591 2.65528 2.74026 3.15441 3.40427 3.45252 3.61542 3.70018 3.84918 3.86855 4.00726 4.14203 4.16234 4.25560 4.27737 4.32691 4.42528 4.51126 4.54571 4.60954 4.64489 4.68326 4.81565 4.87800 4.93188 5.00634 5.01629 5.05323 5.32464 5.55673 5.59283 5.70087 5.94555 6.43064 6.46544 7.14732 7.18072 7.51943 8.23059 8.46113 9.47209 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.003749 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.519125 B = 7466.833498 C = 8583.051296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.441 3.559 3 O -0.985 6.985 4 O -0.972 6.972 5 C -0.597 4.597 6 C -0.138 4.138 7 C 0.516 3.484 8 O -0.580 6.580 9 N -0.600 5.600 10 C 0.105 3.895 11 C -0.129 4.129 12 C -0.110 4.110 13 C 0.173 3.827 14 C 0.075 3.925 15 O -0.565 6.565 16 N -0.715 5.715 17 C -0.172 4.172 18 H 0.096 0.904 19 C -0.097 4.097 20 N -0.983 5.983 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.304 1.304 24 H -0.306 1.306 25 C 0.119 3.881 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.374 0.626 42 H 0.364 0.636 43 H 0.239 0.761 44 H 0.107 0.893 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -13.459 -13.147 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.627 3.373 3 O -0.983 6.983 4 O -0.969 6.969 5 C -0.725 4.725 6 C -0.178 4.178 7 C 0.304 3.696 8 O -0.460 6.460 9 N -0.332 5.332 10 C -0.016 4.016 11 C -0.167 4.167 12 C -0.149 4.149 13 C 0.082 3.918 14 C -0.005 4.005 15 O -0.370 6.370 16 N -0.353 5.353 17 C -0.304 4.304 18 H 0.113 0.887 19 C -0.287 4.287 20 N -0.638 5.638 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.233 1.233 24 H -0.234 1.234 25 C -0.004 4.004 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.174 0.826 29 H 0.175 0.825 30 H 0.152 0.848 31 H 0.125 0.875 32 H 0.155 0.845 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.221 0.779 42 H 0.196 0.804 43 H 0.048 0.952 44 H 0.125 0.875 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.320 -12.882 -13.853 18.963 hybrid contribution -0.611 0.818 2.136 2.368 sum -1.930 -12.064 -11.717 16.928 Atomic orbital electron populations 1.30079 1.21513 1.14037 1.13374 1.07044 0.80075 0.74008 0.76217 1.93568 1.81195 1.36694 1.86804 1.93541 1.81057 1.67395 1.54887 1.30181 1.02827 1.16095 1.23376 1.21483 0.95172 1.04481 0.96678 1.20759 0.82201 0.77755 0.88874 1.90650 1.46279 1.52920 1.56164 1.47999 1.05929 1.61115 1.18114 1.22065 0.87527 0.99776 0.92274 1.21779 0.99467 0.98680 0.96752 1.21782 0.97193 1.00359 0.95572 1.20414 0.92382 0.86604 0.92371 1.22633 0.93362 0.91422 0.93111 1.86805 1.71383 1.42523 1.36302 1.42573 1.12591 1.13163 1.66984 1.19863 0.96510 0.91871 1.22147 0.88681 1.25391 0.97078 1.00965 1.05254 1.69855 1.11970 1.26092 1.55902 0.85240 0.78184 0.80007 0.77528 1.19192 1.23283 1.23440 1.21641 0.99017 0.95999 0.83750 0.83676 0.83791 0.82597 0.82527 0.84753 0.87537 0.84516 0.87670 0.88524 0.89337 0.94374 0.93623 0.89965 0.95779 0.91352 0.77882 0.80448 0.95218 0.87538 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.48 10.62 113.37 1.20 -4.27 16 2 S 2.44 42.58 5.36 -56.49 -0.30 42.28 16 3 O -0.99 -27.04 18.10 -127.37 -2.30 -29.34 16 4 O -0.97 -21.98 18.10 -127.37 -2.30 -24.28 16 5 C -0.60 -11.80 5.09 71.98 0.37 -11.43 16 6 C -0.14 -3.36 4.05 29.85 0.12 -3.24 16 7 C 0.52 16.82 7.70 87.65 0.67 17.50 16 8 O -0.58 -23.11 15.40 -3.02 -0.05 -23.15 16 9 N -0.60 -18.02 2.87 -819.01 -2.35 -20.36 16 10 C 0.11 2.46 6.34 86.36 0.55 3.01 16 11 C -0.13 -3.84 5.93 30.69 0.18 -3.66 16 12 C -0.11 -3.45 4.43 30.64 0.14 -3.32 16 13 C 0.17 6.25 0.68 3.67 0.00 6.25 16 14 C 0.08 2.43 6.09 71.98 0.44 2.87 16 15 O -0.56 -20.30 9.91 -148.98 -1.48 -21.77 16 16 N -0.71 -35.16 4.22 -303.06 -1.28 -36.44 16 17 C -0.17 -9.42 8.14 84.03 0.68 -8.74 16 18 H 0.10 5.16 5.29 -2.91 -0.02 5.14 16 19 C -0.10 -5.79 5.50 84.86 0.47 -5.33 16 20 N -0.98 -63.19 13.06 21.65 0.28 -62.91 16 21 Si 0.96 48.99 29.55 68.60 2.03 51.02 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.30 -15.76 7.11 99.48 0.71 -15.05 16 24 H -0.31 -15.91 7.11 99.48 0.71 -15.21 16 25 C 0.12 3.74 5.13 86.35 0.44 4.18 16 26 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.16 2.40 8.10 -2.39 -0.02 2.38 16 30 H 0.13 2.92 8.10 -2.39 -0.02 2.90 16 31 H 0.11 2.72 7.69 -2.39 -0.02 2.70 16 32 H 0.14 2.38 7.94 -2.39 -0.02 2.36 16 33 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.10 1.93 5.93 -2.39 -0.01 1.92 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.54 7.53 -2.39 -0.02 1.53 16 37 H 0.04 1.71 6.98 -2.38 -0.02 1.69 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.37 9.64 9.12 -74.06 -0.68 8.97 16 42 H 0.36 20.53 7.65 -92.71 -0.71 19.82 16 43 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.06 2.44 7.01 -2.38 -0.02 2.43 16 Total: -1.00 -91.37 370.53 -2.85 -94.22 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.37 Total: 36.93 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.27 Total: -6.18 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -3.34 Total: -119.72 kcal Atomic # 8 Polarization: -92.42 SS G_CDS: -6.13 Total: -98.55 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Atomic # 16 Polarization: 42.58 SS G_CDS: -0.30 Total: 42.28 kcal Total: -91.37 -2.85 -94.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724903876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.487 kcal (2) G-P(sol) polarization free energy of solvation -91.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds