Wall clock time and date at job start Tue Mar 31 2020 18:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47062 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.47335 * 30.00156 * 3 2 1 6 6 H 1.48510 * 109.46916 * 149.99944 * 3 2 1 7 7 C 1.38818 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99684 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00018 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47367 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.49834 * 304.94195 * 11 10 9 13 13 C 1.53039 * 109.52680 * 184.85317 * 11 10 9 14 14 C 1.53041 * 109.53942 * 178.66886 * 13 11 10 15 15 C 1.52764 * 109.38189 * 61.24151 * 14 13 11 16 16 N 1.46925 * 109.00692 * 305.58675 * 15 14 13 17 17 C 1.34769 * 120.63088 * 233.58148 * 16 15 14 18 18 O 1.21700 * 120.00343 * 183.29950 * 17 16 15 19 19 C 1.46583 * 120.00042 * 3.29900 * 17 16 15 20 20 C 1.35869 * 125.41728 * 135.07413 * 19 17 16 21 21 C 1.39171 * 114.00150 * 180.02562 * 20 19 17 22 22 C 1.34371 * 113.99710 * 0.02562 * 21 20 19 23 23 S 1.71473 * 111.07686 * 359.97438 * 22 21 20 24 24 C 1.52372 * 110.38405 * 179.76868 * 22 21 20 25 25 C 1.54028 * 104.97360 * 342.75351 * 24 22 21 26 26 C 1.52821 * 136.18887 * 180.02562 * 21 20 19 27 27 C 1.46926 * 118.73703 * 53.31365 * 16 15 14 28 28 H 0.96998 * 119.99586 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00309 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.46939 * 59.99996 * 10 9 7 31 31 H 1.09002 * 109.47073 * 300.00198 * 10 9 7 32 32 H 1.09000 * 109.45847 * 298.69183 * 13 11 10 33 33 H 1.09007 * 109.45785 * 58.66487 * 13 11 10 34 34 H 1.09000 * 109.49828 * 181.32100 * 14 13 11 35 35 H 1.08997 * 109.49750 * 301.38439 * 14 13 11 36 36 H 1.09002 * 109.50579 * 185.70851 * 15 14 13 37 37 H 1.08998 * 109.42988 * 65.42635 * 15 14 13 38 38 H 1.08007 * 123.00169 * 359.97438 * 20 19 17 39 39 H 1.08998 * 110.35912 * 101.32487 * 24 22 21 40 40 H 1.08998 * 110.34876 * 223.61290 * 24 22 21 41 41 H 1.08996 * 110.79388 * 268.38421 * 25 24 22 42 42 H 1.09001 * 111.10180 * 144.68695 * 25 24 22 43 43 H 1.09002 * 110.32848 * 316.50241 * 26 21 20 44 44 H 1.08998 * 110.33358 * 78.63384 * 26 21 20 45 45 H 1.09004 * 109.59050 * 66.42993 * 27 16 15 46 46 H 1.08996 * 109.58249 * 186.70834 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3804 -4.7137 0.8437 13 6 1.8238 -6.1424 0.1232 14 6 0.8278 -7.3038 0.1573 15 6 0.0277 -7.3238 -1.1439 16 7 -0.5886 -6.0056 -1.3470 17 6 -1.9146 -5.8930 -1.5601 18 8 -2.4041 -4.8021 -1.7866 19 6 -2.7673 -7.0846 -1.5191 20 6 -3.9667 -7.1733 -0.8869 21 6 -4.5755 -8.4196 -1.0001 22 6 -3.8673 -9.3110 -1.7138 23 16 -2.4010 -8.6239 -2.2779 24 6 -4.6041 -10.6431 -1.7804 25 6 -5.6459 -10.5786 -0.6477 26 6 -5.8744 -9.0607 -0.5130 27 6 0.2672 -4.8120 -1.3073 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6847 -3.7145 0.8906 31 1 2.6847 -3.7145 -0.8894 32 1 2.4889 -6.2593 -0.7324 33 1 2.4107 -6.1406 1.0418 34 1 1.3686 -8.2438 0.2678 35 1 0.1470 -7.1747 0.9987 36 1 -0.7500 -8.0850 -1.0813 37 1 0.6947 -7.5476 -1.9764 38 1 -4.4078 -6.3502 -0.3441 39 1 -5.1040 -10.7523 -2.7428 40 1 -3.9109 -11.4681 -1.6165 41 1 -5.2409 -10.9948 0.2747 42 1 -6.5666 -11.0882 -0.9320 43 1 -6.0598 -8.7967 0.5282 44 1 -6.7100 -8.7452 -1.1377 45 1 0.9542 -4.8267 -2.1535 46 1 -0.3523 -3.9165 -1.3552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731528964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:43 Heat of formation + Delta-G solvation = 7.958804 kcal Electronic energy + Delta-G solvation = -26288.673241 eV Core-core repulsion = 22690.743409 eV Total energy + Delta-G solvation = -3597.929832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25810 -39.50404 -37.56123 -34.95268 -34.57778 -32.87153 -31.70819 -29.91081 -28.85948 -28.41918 -25.65037 -25.50351 -23.33005 -23.07178 -21.95819 -21.34852 -20.19231 -19.42119 -18.36466 -18.04208 -16.98896 -16.35309 -16.19136 -15.76905 -15.14163 -14.82736 -14.65611 -14.53664 -14.14735 -13.56578 -13.52327 -13.25361 -13.19238 -13.01887 -12.86682 -12.56013 -12.47593 -12.34670 -12.18568 -12.00706 -11.58876 -11.55318 -11.20073 -11.13279 -11.04689 -10.90741 -10.79964 -10.63759 -10.37620 -10.28618 -9.99011 -9.81385 -9.57669 -8.84492 -8.81107 -8.50982 -8.40420 -6.85800 -5.68344 -2.98210 0.47257 1.10206 1.71061 2.24234 2.87426 3.20788 3.48451 3.52767 3.55140 4.12510 4.17443 4.49798 4.59267 4.62860 4.74352 4.85406 4.90556 5.01198 5.12921 5.16507 5.21387 5.30637 5.33918 5.38637 5.44475 5.51205 5.57270 5.63900 5.64930 5.75037 5.78034 5.81733 5.87308 5.96754 6.07012 6.11791 6.14078 6.18225 6.22287 6.40935 6.55259 6.64045 6.79124 6.90190 7.44142 7.75858 8.20719 8.49313 9.60234 10.18184 10.52379 11.53983 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.002592 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.890777 B =10800.761208 C =11656.790194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.131 4.131 15 C 0.094 3.906 16 N -0.603 5.603 17 C 0.585 3.415 18 O -0.514 6.514 19 C -0.250 4.250 20 C -0.050 4.050 21 C -0.132 4.132 22 C -0.240 4.240 23 S 0.226 5.774 24 C -0.042 4.042 25 C -0.118 4.118 26 C -0.058 4.058 27 C 0.122 3.878 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 -28.267 -2.462 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.169 4.169 15 C -0.031 4.031 16 N -0.336 5.336 17 C 0.371 3.629 18 O -0.390 6.390 19 C -0.370 4.370 20 C -0.083 4.083 21 C -0.145 4.145 22 C -0.359 4.359 23 S 0.496 5.504 24 C -0.081 4.081 25 C -0.157 4.157 26 C -0.097 4.097 27 C 0.001 3.999 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.459 -28.075 -3.483 29.018 hybrid contribution -0.994 1.506 0.871 2.004 sum -7.453 -26.570 -2.612 27.718 Atomic orbital electron populations 1.69678 1.05061 1.25633 1.57402 1.24767 0.95501 0.97687 1.03016 0.86201 0.78586 0.83970 0.77481 1.21742 1.21811 1.20824 1.19200 0.90962 0.84167 1.42973 0.91220 1.42420 1.05954 0.99952 1.89485 1.20630 0.92928 0.85116 0.98037 1.21696 0.98000 0.95221 0.97777 0.90725 1.21532 0.97442 0.93656 1.02415 1.21811 0.98522 0.99293 0.97313 1.22026 0.97785 0.84713 0.98535 1.48049 1.06549 1.08396 1.70613 1.16998 0.81436 0.86989 0.77463 1.90915 1.73339 1.26894 1.47857 1.24225 1.01908 0.99046 1.11795 1.20140 0.92298 0.97152 0.98662 1.20340 0.98793 0.92962 1.02372 1.25780 1.01207 1.02894 1.05986 1.82914 1.14538 1.01335 1.51609 1.20810 0.96034 0.91375 0.99899 1.22257 0.98879 0.95924 0.98629 1.21001 0.93354 0.93750 1.01618 1.21786 0.93210 0.87553 0.97389 0.93482 0.78089 0.96009 0.96207 0.91665 0.91374 0.90701 0.91453 0.89721 0.90965 0.83442 0.90001 0.90579 0.90655 0.90068 0.90605 0.90194 0.91327 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.06 55.49 0.72 -28.60 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.19 5.38 -59.91 -0.32 -19.51 16 10 C 0.16 3.27 5.66 -4.04 -0.02 3.25 16 11 C -0.11 -1.78 2.37 -90.50 -0.21 -2.00 16 12 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.11 -1.39 5.17 -26.69 -0.14 -1.53 16 14 C -0.13 -1.37 6.06 -26.83 -0.16 -1.53 16 15 C 0.09 1.03 5.85 -3.93 -0.02 1.01 16 16 N -0.60 -9.12 2.98 -174.61 -0.52 -9.64 16 17 C 0.59 9.97 7.53 -12.90 -0.10 9.87 16 18 O -0.51 -11.10 16.51 5.19 0.09 -11.02 16 19 C -0.25 -3.42 5.45 -37.07 -0.20 -3.62 16 20 C -0.05 -0.65 10.21 -40.08 -0.41 -1.05 16 21 C -0.13 -1.38 6.49 -104.58 -0.68 -2.06 16 22 C -0.24 -2.28 7.10 -34.84 -0.25 -2.53 16 23 S 0.23 2.27 19.88 -107.50 -2.14 0.13 16 24 C -0.04 -0.27 6.80 -26.52 -0.18 -0.45 16 25 C -0.12 -0.66 7.10 -25.62 -0.18 -0.84 16 26 C -0.06 -0.43 6.81 -26.25 -0.18 -0.61 16 27 C 0.12 2.12 5.51 -3.71 -0.02 2.10 16 28 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 29 H 0.38 10.79 6.89 -40.82 -0.28 10.51 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.85 4.00 -30.10 -0.12 0.73 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.15 1.90 8.06 -52.48 -0.42 1.47 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.11 2.27 6.23 -51.93 -0.32 1.95 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -34.64 375.74 -11.57 -46.21 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.04 Total: 6.33 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.00 Total: -7.60 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.12 Total: -57.75 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.14 Total: 0.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.64 -11.57 -46.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731528964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.171 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds